Wall clock time and date at job start Tue Mar 31 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46771 * 2 1 4 4 H 1.08999 * 109.47150 * 54.30382 * 3 2 1 5 5 C 1.50701 * 109.46999 * 174.30398 * 3 2 1 6 6 H 1.08001 * 119.99485 * 119.99479 * 5 3 2 7 7 C 1.37874 * 120.00126 * 300.00055 * 5 3 2 8 8 N 1.31515 * 119.99879 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47301 * 90.00502 * 9 7 5 11 11 H 1.48508 * 109.47035 * 210.00280 * 9 7 5 12 12 H 1.48501 * 109.47364 * 329.99965 * 9 7 5 13 13 N 1.46909 * 109.46964 * 294.30442 * 3 2 1 14 14 C 1.46900 * 110.99746 * 108.21506 * 13 3 2 15 15 H 1.08998 * 109.47249 * 326.18438 * 14 13 3 16 16 C 1.50700 * 109.46684 * 206.18826 * 14 13 3 17 17 C 1.38165 * 120.02888 * 339.99758 * 16 14 13 18 18 C 1.38244 * 120.05648 * 180.29999 * 17 16 14 19 19 C 1.38296 * 120.11028 * 359.44682 * 18 17 16 20 20 C 1.38124 * 120.05021 * 0.55857 * 19 18 17 21 21 C 1.38706 * 120.02555 * 160.02651 * 16 14 13 22 22 O 1.35893 * 120.05736 * 359.94952 * 21 16 14 23 23 C 1.42908 * 117.00212 * 180.02562 * 22 21 16 24 24 C 1.53002 * 109.46875 * 86.19188 * 14 13 3 25 25 C 1.53001 * 117.49871 * 127.51941 * 24 14 13 26 26 C 1.52994 * 117.50259 * 58.85647 * 24 14 13 27 27 H 1.09007 * 109.47440 * 63.67621 * 1 2 3 28 28 H 1.09002 * 109.47130 * 183.67430 * 1 2 3 29 29 H 1.08998 * 109.47435 * 303.67280 * 1 2 3 30 30 H 1.08996 * 109.47205 * 239.99763 * 2 1 3 31 31 H 1.08997 * 109.47147 * 119.99511 * 2 1 3 32 32 H 0.97000 * 119.99660 * 179.97438 * 8 7 5 33 33 H 1.00901 * 110.99543 * 232.17152 * 13 3 2 34 34 H 1.08000 * 119.97676 * 0.02957 * 17 16 14 35 35 H 1.08001 * 119.94712 * 179.70799 * 18 17 16 36 36 H 1.07998 * 119.97089 * 180.29680 * 19 18 17 37 37 H 1.08007 * 120.02498 * 179.74599 * 20 19 18 38 38 H 1.08996 * 109.46867 * 59.99956 * 23 22 21 39 39 H 1.08996 * 109.46958 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.46673 * 300.00022 * 23 22 21 41 41 H 1.08997 * 115.54635 * 273.18302 * 24 14 13 42 42 H 1.08996 * 117.49953 * 0.02562 * 25 24 14 43 43 H 1.09005 * 117.49498 * 145.01573 * 25 24 14 44 44 H 1.08996 * 117.49956 * 214.97784 * 26 24 14 45 45 H 1.09003 * 117.49990 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5957 1.9849 0.8346 5 6 3.5403 1.4449 0.1410 6 1 4.1544 1.8864 -0.6300 7 6 4.1290 0.8836 1.2542 8 7 5.4384 0.8852 1.3770 9 14 3.0667 0.1206 2.5879 10 1 2.8484 -1.3167 2.2852 11 1 3.7495 0.2519 3.9002 12 1 1.7578 0.8202 2.6389 13 7 1.6656 2.0942 -1.2623 14 6 0.6023 3.0849 -1.0482 15 1 -0.0595 2.7415 -0.2531 16 6 -0.1876 3.2566 -2.3201 17 6 0.3589 2.8750 -3.5303 18 6 -0.3627 3.0381 -4.6981 19 6 -1.6375 3.5727 -4.6570 20 6 -2.1883 3.9558 -3.4496 21 6 -1.4637 3.7985 -2.2768 22 8 -2.0036 4.1742 -1.0876 23 6 -3.3223 4.7241 -1.1187 24 6 1.2257 4.4242 -0.6502 25 6 0.8145 5.6608 -1.4519 26 6 2.2125 5.0630 -1.6295 27 1 -0.3634 0.4557 -0.9211 28 1 -0.3633 -1.0256 0.0659 29 1 -0.3634 0.5698 0.8552 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 5.8526 0.4906 2.1604 33 1 2.4691 2.5157 -1.7037 34 1 1.3525 2.4530 -3.5646 35 1 0.0680 2.7435 -5.6437 36 1 -2.2011 3.6946 -5.5701 37 1 -3.1823 4.3772 -3.4185 38 1 -4.0123 3.9901 -1.5347 39 1 -3.6324 4.9817 -0.1060 40 1 -3.3277 5.6204 -1.7390 41 1 1.4172 4.5556 0.4147 42 1 0.0996 5.5203 -2.2625 43 1 0.7360 6.6058 -0.9143 44 1 3.0530 5.6149 -1.2089 45 1 2.4179 4.5289 -2.5572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:58 Heat of formation + Delta-G solvation = 21.216835 kcal Electronic energy + Delta-G solvation = -24337.631494 eV Core-core repulsion = 21128.540137 eV Total energy + Delta-G solvation = -3209.091357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41710 -38.12644 -36.84158 -35.50342 -32.48144 -31.67894 -30.25961 -29.94285 -27.56187 -26.99719 -24.90969 -22.58030 -22.05789 -22.02424 -21.53696 -19.90106 -19.15246 -17.86712 -16.97053 -16.12003 -15.96518 -15.46133 -15.32699 -14.99426 -14.37737 -14.05078 -13.82568 -13.48063 -13.33601 -12.87498 -12.55443 -12.51243 -12.25309 -12.03575 -11.78893 -11.61032 -11.44951 -11.15980 -11.07902 -11.01284 -10.87893 -10.75017 -10.58667 -10.22381 -9.83905 -9.77443 -9.68963 -9.26807 -8.98969 -8.60386 -8.56255 -7.92438 -7.42796 -6.08230 -4.07659 1.54781 1.62877 3.29584 3.39324 3.39745 3.42274 3.96238 4.24944 4.41061 4.79020 4.90555 5.07748 5.09449 5.17487 5.19987 5.27101 5.29109 5.37181 5.40914 5.46887 5.58926 5.72827 5.89809 5.96073 6.00379 6.08159 6.10594 6.19651 6.27062 6.28654 6.34845 6.50311 6.51921 6.62248 6.66061 6.72409 6.76502 6.83285 6.99541 7.03679 7.08542 7.46136 7.55059 7.60536 8.02932 8.39236 8.61905 8.96698 9.54886 11.04534 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.005319 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.495089 B = 5262.817626 C = 5439.069880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.189 3.811 4 H 0.014 0.986 5 C -0.524 4.524 6 H 0.077 0.923 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.300 1.300 12 H -0.266 1.266 13 N -0.670 5.670 14 C 0.162 3.838 15 H 0.087 0.913 16 C -0.084 4.084 17 C -0.059 4.059 18 C -0.161 4.161 19 C -0.094 4.094 20 C -0.217 4.217 21 C 0.127 3.873 22 O -0.307 6.307 23 C 0.029 3.971 24 C -0.160 4.160 25 C -0.179 4.179 26 C -0.172 4.172 27 H 0.058 0.942 28 H 0.033 0.967 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.342 0.658 34 H 0.138 0.862 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.051 0.949 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.890 7.797 -8.486 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.080 3.920 4 H 0.031 0.969 5 C -0.563 4.563 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.191 1.191 13 N -0.300 5.300 14 C 0.051 3.949 15 H 0.105 0.895 16 C -0.086 4.086 17 C -0.077 4.077 18 C -0.180 4.180 19 C -0.112 4.112 20 C -0.236 4.236 21 C 0.082 3.918 22 O -0.221 6.221 23 C -0.067 4.067 24 C -0.180 4.180 25 C -0.217 4.217 26 C -0.209 4.209 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.075 7.211 -8.353 19.498 hybrid contribution -0.239 0.296 1.113 1.176 sum -16.314 7.507 -7.240 19.363 Atomic orbital electron populations 1.21800 0.98149 0.99386 1.01055 1.21864 0.93249 0.99747 1.00368 1.19545 0.95410 0.90420 0.86617 0.96877 1.21349 0.89513 1.38842 1.06556 0.90538 1.24936 0.94746 0.95407 0.97855 1.69900 1.09097 1.45393 1.29282 0.86849 0.80736 0.79909 0.80696 1.20512 1.22740 1.19062 1.60748 1.12854 1.30010 1.26368 1.19876 0.93150 0.89030 0.92862 0.89453 1.19333 0.92001 1.00719 0.96513 1.20976 1.00395 0.95878 0.90435 1.21066 0.95288 1.03203 0.98420 1.20813 0.95498 0.98143 0.96743 1.21084 1.00979 1.08859 0.92663 1.18834 0.92703 0.95855 0.84419 1.86151 1.31019 1.76761 1.28125 1.22989 0.82525 0.97635 1.03526 1.22947 1.03200 0.94189 0.97639 1.22998 0.98456 0.96892 1.03357 1.22818 0.92780 1.03981 1.01316 0.92318 0.94754 0.94363 0.91916 0.94001 0.92686 0.83859 0.84432 0.86357 0.86572 0.86131 0.93055 0.88594 0.93042 0.88033 0.88947 0.89988 0.89152 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.04 37.16 0.34 -2.47 16 2 C -0.11 -2.54 5.10 -26.73 -0.14 -2.68 16 3 C 0.19 4.37 1.59 -68.86 -0.11 4.26 16 4 H 0.01 0.33 6.43 -51.93 -0.33 0.00 16 5 C -0.52 -14.28 9.19 -34.44 -0.32 -14.60 16 6 H 0.08 2.24 7.60 -52.49 -0.40 1.84 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 9 Si 0.89 22.18 24.41 -169.99 -4.15 18.03 16 10 H -0.28 -6.83 6.82 56.52 0.39 -6.44 16 11 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 13 N -0.67 -13.16 4.57 -102.16 -0.47 -13.63 16 14 C 0.16 2.85 1.58 -68.86 -0.11 2.74 16 15 H 0.09 1.68 6.75 -51.93 -0.35 1.33 16 16 C -0.08 -1.32 3.52 -104.48 -0.37 -1.68 16 17 C -0.06 -0.86 8.95 -39.61 -0.35 -1.22 16 18 C -0.16 -2.05 10.04 -39.56 -0.40 -2.44 16 19 C -0.09 -1.10 10.04 -39.60 -0.40 -1.50 16 20 C -0.22 -2.66 9.04 -39.43 -0.36 -3.01 16 21 C 0.13 1.82 4.96 -39.22 -0.19 1.63 16 22 O -0.31 -4.26 9.70 -19.40 -0.19 -4.45 16 23 C 0.03 0.27 9.81 101.05 0.99 1.26 16 24 C -0.16 -2.71 5.93 -90.62 -0.54 -3.25 16 25 C -0.18 -2.64 9.46 -26.69 -0.25 -2.89 16 26 C -0.17 -2.69 9.28 -26.70 -0.25 -2.93 16 27 H 0.06 1.10 7.52 -51.93 -0.39 0.70 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.04 0.99 3.22 -51.93 -0.17 0.82 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.34 6.84 6.04 -39.29 -0.24 6.60 16 34 H 0.14 2.08 6.87 -52.49 -0.36 1.72 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.19 6.30 -52.48 -0.33 0.86 16 38 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 41 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 42 H 0.09 1.37 5.45 -51.93 -0.28 1.09 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.09 1.43 7.34 -51.93 -0.38 1.04 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -29.76 346.34 -8.38 -38.13 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.02 Total: 9.95 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -2.55 Total: -26.82 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.31 Total: -40.06 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.19 Total: -4.45 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.15 Total: 18.03 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.76 -8.38 -38.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.349 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds