Wall clock time and date at job start Tue Mar 31 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46771 * 2 1 4 4 H 1.08999 * 109.47150 * 54.30382 * 3 2 1 5 5 C 1.50701 * 109.46999 * 174.30398 * 3 2 1 6 6 H 1.08001 * 119.99485 * 119.99479 * 5 3 2 7 7 C 1.37874 * 120.00126 * 300.00055 * 5 3 2 8 8 N 1.31515 * 119.99879 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47301 * 90.00502 * 9 7 5 11 11 H 1.48508 * 109.47035 * 210.00280 * 9 7 5 12 12 H 1.48501 * 109.47364 * 329.99965 * 9 7 5 13 13 N 1.46909 * 109.46964 * 294.30442 * 3 2 1 14 14 C 1.46900 * 110.99746 * 108.21506 * 13 3 2 15 15 H 1.08998 * 109.47249 * 326.18438 * 14 13 3 16 16 C 1.50700 * 109.46684 * 206.18826 * 14 13 3 17 17 C 1.38165 * 120.02888 * 339.99758 * 16 14 13 18 18 C 1.38244 * 120.05648 * 180.29999 * 17 16 14 19 19 C 1.38296 * 120.11028 * 359.44682 * 18 17 16 20 20 C 1.38124 * 120.05021 * 0.55857 * 19 18 17 21 21 C 1.38706 * 120.02555 * 160.02651 * 16 14 13 22 22 O 1.35893 * 120.05736 * 359.94952 * 21 16 14 23 23 C 1.42908 * 117.00212 * 180.02562 * 22 21 16 24 24 C 1.53002 * 109.46875 * 86.19188 * 14 13 3 25 25 C 1.53001 * 117.49871 * 127.51941 * 24 14 13 26 26 C 1.52994 * 117.50259 * 58.85647 * 24 14 13 27 27 H 1.09007 * 109.47440 * 63.67621 * 1 2 3 28 28 H 1.09002 * 109.47130 * 183.67430 * 1 2 3 29 29 H 1.08998 * 109.47435 * 303.67280 * 1 2 3 30 30 H 1.08996 * 109.47205 * 239.99763 * 2 1 3 31 31 H 1.08997 * 109.47147 * 119.99511 * 2 1 3 32 32 H 0.97000 * 119.99660 * 179.97438 * 8 7 5 33 33 H 1.00901 * 110.99543 * 232.17152 * 13 3 2 34 34 H 1.08000 * 119.97676 * 0.02957 * 17 16 14 35 35 H 1.08001 * 119.94712 * 179.70799 * 18 17 16 36 36 H 1.07998 * 119.97089 * 180.29680 * 19 18 17 37 37 H 1.08007 * 120.02498 * 179.74599 * 20 19 18 38 38 H 1.08996 * 109.46867 * 59.99956 * 23 22 21 39 39 H 1.08996 * 109.46958 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.46673 * 300.00022 * 23 22 21 41 41 H 1.08997 * 115.54635 * 273.18302 * 24 14 13 42 42 H 1.08996 * 117.49953 * 0.02562 * 25 24 14 43 43 H 1.09005 * 117.49498 * 145.01573 * 25 24 14 44 44 H 1.08996 * 117.49956 * 214.97784 * 26 24 14 45 45 H 1.09003 * 117.49990 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5957 1.9849 0.8346 5 6 3.5403 1.4449 0.1410 6 1 4.1544 1.8864 -0.6300 7 6 4.1290 0.8836 1.2542 8 7 5.4384 0.8852 1.3770 9 14 3.0667 0.1206 2.5879 10 1 2.8484 -1.3167 2.2852 11 1 3.7495 0.2519 3.9002 12 1 1.7578 0.8202 2.6389 13 7 1.6656 2.0942 -1.2623 14 6 0.6023 3.0849 -1.0482 15 1 -0.0595 2.7415 -0.2531 16 6 -0.1876 3.2566 -2.3201 17 6 0.3589 2.8750 -3.5303 18 6 -0.3627 3.0381 -4.6981 19 6 -1.6375 3.5727 -4.6570 20 6 -2.1883 3.9558 -3.4496 21 6 -1.4637 3.7985 -2.2768 22 8 -2.0036 4.1742 -1.0876 23 6 -3.3223 4.7241 -1.1187 24 6 1.2257 4.4242 -0.6502 25 6 0.8145 5.6608 -1.4519 26 6 2.2125 5.0630 -1.6295 27 1 -0.3634 0.4557 -0.9211 28 1 -0.3633 -1.0256 0.0659 29 1 -0.3634 0.5698 0.8552 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 5.8526 0.4906 2.1604 33 1 2.4691 2.5157 -1.7037 34 1 1.3525 2.4530 -3.5646 35 1 0.0680 2.7435 -5.6437 36 1 -2.2011 3.6946 -5.5701 37 1 -3.1823 4.3772 -3.4185 38 1 -4.0123 3.9901 -1.5347 39 1 -3.6324 4.9817 -0.1060 40 1 -3.3277 5.6204 -1.7390 41 1 1.4172 4.5556 0.4147 42 1 0.0996 5.5203 -2.2625 43 1 0.7360 6.6058 -0.9143 44 1 3.0530 5.6149 -1.2089 45 1 2.4179 4.5289 -2.5572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:58 Heat of formation + Delta-G solvation = 3.839896 kcal Electronic energy + Delta-G solvation = -24338.385014 eV Core-core repulsion = 21128.540137 eV Total energy + Delta-G solvation = -3209.844877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48834 -39.36917 -37.91633 -37.13604 -34.36406 -33.29447 -31.58898 -30.91742 -29.16256 -27.94222 -26.40901 -24.34879 -23.31148 -23.15624 -22.62887 -21.57566 -20.56111 -19.20431 -18.54506 -17.56340 -17.01098 -16.85355 -16.54848 -16.21864 -15.63780 -15.54224 -15.08656 -14.96803 -14.68786 -14.44474 -14.17214 -13.89451 -13.52025 -13.39334 -13.17814 -13.00159 -12.73053 -12.63641 -12.49342 -12.31913 -12.28860 -11.99271 -11.87602 -11.80858 -11.50661 -11.29096 -11.11869 -11.05601 -10.87819 -10.70075 -9.63493 -9.09830 -8.90309 -8.30703 -6.33379 0.53422 0.63192 1.28807 1.33531 1.43648 2.30315 2.53370 2.92464 2.96447 3.05353 3.49989 3.86450 3.95423 4.04909 4.11337 4.21682 4.29758 4.36172 4.39717 4.45125 4.46565 4.51430 4.58735 4.64190 4.76166 4.77439 4.78703 4.83191 4.92948 5.00674 5.03396 5.10724 5.17278 5.25531 5.27606 5.32074 5.35265 5.51876 5.53126 5.65412 5.68640 5.78914 6.01399 6.09692 6.50632 6.62044 6.67539 6.89118 7.33362 8.85250 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.005319 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.495089 B = 5262.817626 C = 5439.069880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C 0.198 3.802 4 H 0.001 0.999 5 C -0.522 4.522 6 H 0.043 0.957 7 C 0.019 3.981 8 N -0.944 5.944 9 Si 0.944 3.056 10 H -0.267 1.267 11 H -0.300 1.300 12 H -0.254 1.254 13 N -0.662 5.662 14 C 0.171 3.829 15 H 0.068 0.932 16 C -0.105 4.105 17 C -0.073 4.073 18 C -0.165 4.165 19 C -0.086 4.086 20 C -0.214 4.214 21 C 0.121 3.879 22 O -0.332 6.332 23 C 0.020 3.980 24 C -0.182 4.182 25 C -0.149 4.149 26 C -0.174 4.174 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.337 0.663 34 H 0.123 0.877 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.211 8.282 -9.649 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.153 4.153 3 C 0.088 3.912 4 H 0.018 0.982 5 C -0.560 4.560 6 H 0.061 0.939 7 C -0.179 4.179 8 N -0.585 5.585 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.228 1.228 12 H -0.178 1.178 13 N -0.291 5.291 14 C 0.060 3.940 15 H 0.086 0.914 16 C -0.107 4.107 17 C -0.091 4.091 18 C -0.183 4.183 19 C -0.104 4.104 20 C -0.233 4.233 21 C 0.075 3.925 22 O -0.246 6.246 23 C -0.075 4.075 24 C -0.202 4.202 25 C -0.187 4.187 26 C -0.211 4.211 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.156 0.844 34 H 0.141 0.859 35 H 0.155 0.845 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.428 7.706 -9.530 22.971 hybrid contribution 0.771 0.233 1.380 1.598 sum -18.657 7.939 -8.150 21.853 Atomic orbital electron populations 1.21672 0.95366 1.00954 1.01241 1.21790 0.95716 0.98279 0.99498 1.19342 0.92454 0.91630 0.87776 0.98176 1.21639 0.91649 1.37395 1.05360 0.93889 1.25700 0.95739 0.96195 1.00226 1.70034 1.10920 1.47207 1.30302 0.85923 0.79498 0.79661 0.77756 1.19320 1.22794 1.17782 1.60752 1.12961 1.31131 1.24268 1.19705 0.92023 0.88375 0.93855 0.91398 1.19127 0.92950 1.03137 0.95454 1.20946 1.00258 0.96697 0.91215 1.21302 0.95754 1.02921 0.98321 1.21218 0.95014 0.96312 0.97888 1.21414 1.01893 1.08044 0.91927 1.18907 0.92348 0.95849 0.85406 1.86121 1.33111 1.77033 1.28314 1.23278 0.80785 0.98390 1.05019 1.22859 1.05034 0.95419 0.96841 1.22969 0.97278 0.96101 1.02343 1.22831 0.93411 1.04041 1.00859 0.92054 0.92403 0.94299 0.92449 0.95165 0.92627 0.84421 0.85899 0.84465 0.83309 0.83397 0.91851 0.87252 0.91519 0.90095 0.88431 0.88525 0.89264 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.04 71.98 0.65 -4.29 16 2 C -0.11 -5.06 5.10 30.59 0.16 -4.90 16 3 C 0.20 9.33 1.59 44.17 0.07 9.40 16 4 H 0.00 0.03 6.43 -2.39 -0.02 0.01 16 5 C -0.52 -29.55 9.19 25.60 0.24 -29.31 16 6 H 0.04 2.66 7.60 -2.91 -0.02 2.64 16 7 C 0.02 1.13 5.45 84.65 0.46 1.59 16 8 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 9 Si 0.94 46.26 24.41 68.60 1.67 47.93 16 10 H -0.27 -12.54 6.82 99.48 0.68 -11.87 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.25 -11.82 6.53 99.48 0.65 -11.17 16 13 N -0.66 -26.76 4.57 -477.13 -2.18 -28.94 16 14 C 0.17 6.10 1.58 44.17 0.07 6.17 16 15 H 0.07 2.66 6.75 -2.39 -0.02 2.64 16 16 C -0.11 -3.21 3.52 -19.77 -0.07 -3.28 16 17 C -0.07 -2.09 8.95 22.25 0.20 -1.89 16 18 C -0.16 -3.77 10.04 22.28 0.22 -3.54 16 19 C -0.09 -1.69 10.04 22.26 0.22 -1.47 16 20 C -0.21 -4.47 9.04 22.37 0.20 -4.27 16 21 C 0.12 3.20 4.96 22.51 0.11 3.31 16 22 O -0.33 -8.59 9.70 -92.34 -0.90 -9.49 16 23 C 0.02 0.31 9.81 113.37 1.11 1.42 16 24 C -0.18 -6.30 5.93 -10.79 -0.06 -6.36 16 25 C -0.15 -4.26 9.46 30.62 0.29 -3.97 16 26 C -0.17 -5.53 9.28 30.62 0.28 -5.25 16 27 H 0.06 2.21 7.52 -2.38 -0.02 2.19 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.03 1.40 3.22 -2.39 -0.01 1.39 16 32 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 33 H 0.34 14.16 6.04 -89.69 -0.54 13.62 16 34 H 0.12 3.78 6.87 -2.91 -0.02 3.76 16 35 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.15 2.22 6.30 -2.91 -0.02 2.20 16 38 H 0.06 0.83 7.66 -2.39 -0.02 0.82 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 0.83 7.66 -2.39 -0.02 0.82 16 41 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.10 2.73 5.45 -2.39 -0.01 2.71 16 43 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 44 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 45 H 0.09 2.93 7.34 -2.39 -0.02 2.91 16 Total: -1.00 -65.90 346.34 3.41 -62.49 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.36 Total: 33.46 kcal Atomic # 6 Polarization: -50.79 SS G_CDS: 4.16 Total: -46.63 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -1.88 Total: -87.77 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.90 Total: -9.49 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.67 Total: 47.93 kcal Total: -65.90 3.41 -62.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.331 kcal (2) G-P(sol) polarization free energy of solvation -65.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds