Wall clock time and date at job start Tue Mar 31 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47531 * 2 1 4 4 H 1.09002 * 109.47018 * 57.78292 * 3 2 1 5 5 C 1.50696 * 109.47071 * 177.78013 * 3 2 1 6 6 H 1.08001 * 120.00007 * 119.99886 * 5 3 2 7 7 C 1.37880 * 120.00011 * 300.00025 * 5 3 2 8 8 N 1.31520 * 120.00086 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99909 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47253 * 60.00005 * 9 7 5 11 11 H 1.48499 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47101 * 299.99750 * 9 7 5 13 13 N 1.46898 * 109.46918 * 297.78092 * 3 2 1 14 14 C 1.46849 * 110.99642 * 170.88801 * 13 3 2 15 15 C 1.53042 * 109.52105 * 185.83892 * 14 13 3 16 16 C 1.53116 * 109.27695 * 300.82130 * 15 14 13 17 17 O 1.42900 * 109.52246 * 177.56498 * 16 15 14 18 18 C 1.35895 * 117.00460 * 155.64452 * 17 16 15 19 19 C 1.38736 * 120.05483 * 5.38743 * 18 17 16 20 20 C 1.38145 * 119.94661 * 179.97438 * 19 18 17 21 21 C 1.38271 * 120.05329 * 359.97438 * 20 19 18 22 22 C 1.38264 * 120.10894 * 0.04267 * 21 20 19 23 23 C 1.38137 * 120.06039 * 359.95490 * 22 21 20 24 24 C 1.53119 * 109.16379 * 57.65341 * 16 15 14 25 25 C 1.46846 * 111.00076 * 295.09605 * 13 3 2 26 26 H 1.09004 * 109.47242 * 300.00402 * 1 2 3 27 27 H 1.09008 * 109.46542 * 59.99587 * 1 2 3 28 28 H 1.08992 * 109.47708 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46946 * 239.99682 * 2 1 3 30 30 H 1.09008 * 109.46542 * 120.00413 * 2 1 3 31 31 H 0.97001 * 119.99655 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.46248 * 65.82421 * 14 13 3 33 33 H 1.09006 * 109.46173 * 305.85173 * 14 13 3 34 34 H 1.08998 * 109.50080 * 180.87953 * 15 14 13 35 35 H 1.09000 * 109.50413 * 60.76338 * 15 14 13 36 36 H 1.09002 * 109.52308 * 297.68491 * 16 15 14 37 37 H 1.07999 * 120.02711 * 359.70153 * 19 18 17 38 38 H 1.07998 * 119.97527 * 179.97438 * 20 19 18 39 39 H 1.07996 * 119.93895 * 179.97438 * 21 20 19 40 40 H 1.08007 * 119.96956 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.03172 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.50148 * 62.28468 * 24 16 15 43 43 H 1.08998 * 109.50263 * 182.39972 * 24 16 15 44 44 H 1.09005 * 109.46188 * 294.17959 * 25 13 3 45 45 H 1.08994 * 109.46456 * 54.14505 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6447 1.9677 0.8695 5 6 3.5461 1.4427 0.0550 6 1 4.1154 1.8999 -0.7407 7 6 4.1970 0.8592 1.1212 8 7 3.5037 0.3019 2.0900 9 14 6.0638 0.8601 1.1898 10 1 6.5584 2.2602 1.1902 11 1 6.5140 0.1763 2.4287 12 1 6.6030 0.1449 0.0053 13 7 1.5947 2.1193 -1.2254 14 6 1.8779 3.5589 -1.1639 15 6 1.2728 4.2518 -2.3870 16 6 1.8743 3.6481 -3.6591 17 8 1.2714 4.2519 -4.8054 18 6 1.9893 4.2386 -5.9591 19 6 3.1980 3.5600 -6.0176 20 6 3.9257 3.5475 -7.1918 21 6 3.4502 4.2102 -8.3083 22 6 2.2461 4.8875 -8.2524 23 6 1.5146 4.9029 -7.0807 24 6 1.6074 2.1405 -3.6748 25 6 2.2028 1.5088 -2.4144 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0275 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5140 0.8900 31 1 3.9618 -0.1083 2.8402 32 1 2.9563 3.7168 -1.1536 33 1 1.4411 3.9765 -0.2567 34 1 1.4965 5.3179 -2.3490 35 1 0.1926 4.1060 -2.3905 36 1 2.9491 3.8290 -3.6751 37 1 3.5718 3.0456 -5.1447 38 1 4.8668 3.0198 -7.2377 39 1 4.0208 4.1996 -9.2252 40 1 1.8769 5.4047 -9.1258 41 1 0.5743 5.4325 -7.0375 42 1 0.5325 1.9614 -3.6986 43 1 2.0702 1.6982 -4.5570 44 1 3.2798 1.6763 -2.3982 45 1 2.0021 0.4375 -2.4156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:55 Heat of formation + Delta-G solvation = -17.930929 kcal Electronic energy + Delta-G solvation = -23610.832277 eV Core-core repulsion = 20400.043346 eV Total energy + Delta-G solvation = -3210.788931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32806 -38.46546 -37.06594 -34.21011 -31.85405 -31.16119 -30.45652 -30.34816 -29.39841 -26.48380 -24.13212 -23.07260 -22.58378 -22.34094 -21.52172 -19.67611 -19.02187 -18.16849 -16.55298 -16.18895 -15.74715 -15.22737 -14.96430 -14.57341 -14.37303 -14.13155 -13.62506 -13.50423 -13.24241 -13.07511 -12.81812 -12.54914 -12.18370 -11.84546 -11.72086 -11.62531 -11.49594 -11.16848 -11.09612 -10.89814 -10.79849 -10.61499 -10.39791 -10.37930 -10.06011 -9.84782 -9.69562 -9.36225 -9.11186 -9.04664 -8.40274 -8.15284 -7.18076 -6.02955 -4.16657 1.28812 1.42509 3.24122 3.29870 3.30201 3.32108 3.75821 4.35446 4.78651 4.85076 4.88026 5.05107 5.06560 5.11937 5.21662 5.31047 5.34770 5.40418 5.58393 5.70034 5.91254 5.93038 6.01357 6.04310 6.14461 6.22611 6.31333 6.32695 6.39740 6.45482 6.47283 6.47576 6.55656 6.66992 6.69371 6.76295 6.80693 7.09494 7.16789 7.32289 7.55134 7.56709 7.72944 7.92864 8.11237 8.26853 8.42283 8.92770 9.51130 10.96353 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.004148 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.601945 B = 6748.225728 C = 7547.112161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.039 0.961 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.533 5.533 14 C 0.067 3.933 15 C -0.108 4.108 16 C 0.087 3.913 17 O -0.312 6.312 18 C 0.140 3.860 19 C -0.210 4.210 20 C -0.080 4.080 21 C -0.168 4.168 22 C -0.084 4.084 23 C -0.160 4.160 24 C -0.140 4.140 25 C 0.065 3.935 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.024 0.976 29 H 0.032 0.968 30 H 0.091 0.909 31 H 0.262 0.738 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.038 0.962 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 6.507 -15.142 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.109 3.891 4 H 0.057 0.943 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.258 5.258 14 C -0.062 4.062 15 C -0.146 4.146 16 C 0.032 3.968 17 O -0.225 6.225 18 C 0.094 3.906 19 C -0.229 4.229 20 C -0.098 4.098 21 C -0.186 4.186 22 C -0.102 4.102 23 C -0.179 4.179 24 C -0.178 4.178 25 C -0.064 4.064 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.227 6.420 -14.921 16.561 hybrid contribution 2.250 -0.109 0.210 2.262 sum -0.977 6.311 -14.711 16.037 Atomic orbital electron populations 1.21712 0.98805 0.98399 1.00679 1.21599 0.92232 0.99090 1.01950 1.19265 0.92590 0.91054 0.86225 0.94298 1.21684 0.92668 1.37632 1.06524 0.92689 1.24897 0.97906 0.94978 0.95492 1.69863 1.35117 1.37357 1.09896 0.86759 0.86241 0.78194 0.77416 1.20386 1.21189 1.20350 1.62427 1.57957 1.01362 1.04042 1.21808 0.98530 0.90073 0.95789 1.21696 1.01865 0.98960 0.92069 1.22650 0.97182 0.93440 0.83552 1.86114 1.44331 1.75299 1.16796 1.19095 0.90556 0.94072 0.86881 1.21449 0.96432 1.04849 1.00126 1.20975 0.99001 0.97492 0.92361 1.21012 0.97508 1.01290 0.98787 1.20920 0.94435 0.98007 0.96852 1.20452 1.02111 1.03708 0.91632 1.22224 1.02873 0.93805 0.98866 1.21848 0.96739 0.99090 0.88686 0.94254 0.93249 0.95651 0.94893 0.89040 0.92788 0.94469 0.90852 0.91686 0.90516 0.91404 0.85005 0.85984 0.86248 0.85721 0.85448 0.90622 0.92060 0.94358 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.78 37.16 0.36 -2.39 16 2 C -0.11 -2.54 5.07 -26.73 -0.14 -2.67 16 3 C 0.21 5.07 1.74 -68.87 -0.12 4.95 16 4 H 0.04 1.03 8.00 -51.93 -0.42 0.61 16 5 C -0.55 -14.04 7.22 -34.44 -0.25 -14.29 16 6 H 0.06 1.42 5.84 -52.49 -0.31 1.11 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.28 11.30 55.43 0.63 -23.65 16 9 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.53 -10.66 3.94 -228.08 -0.90 -11.56 16 14 C 0.07 1.22 5.18 -3.83 -0.02 1.20 16 15 C -0.11 -1.66 5.75 -26.65 -0.15 -1.81 16 16 C 0.09 1.33 2.18 -26.61 -0.06 1.27 16 17 O -0.31 -4.73 9.81 -19.41 -0.19 -4.92 16 18 C 0.14 1.95 6.60 -39.21 -0.26 1.70 16 19 C -0.21 -2.78 8.26 -39.43 -0.33 -3.10 16 20 C -0.08 -0.92 10.04 -39.60 -0.40 -1.31 16 21 C -0.17 -1.73 10.04 -39.56 -0.40 -2.13 16 22 C -0.08 -0.87 10.04 -39.61 -0.40 -1.27 16 23 C -0.16 -1.94 9.99 -39.44 -0.39 -2.34 16 24 C -0.14 -2.20 5.37 -26.65 -0.14 -2.34 16 25 C 0.06 1.21 4.79 -3.84 -0.02 1.19 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.95 7.67 -51.92 -0.40 0.55 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.75 6.30 -51.93 -0.33 0.42 16 30 H 0.09 2.36 6.01 -51.92 -0.31 2.05 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.04 0.73 7.23 -51.93 -0.38 0.36 16 33 H 0.07 1.34 8.03 -51.93 -0.42 0.93 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.04 6.34 -51.93 -0.33 0.71 16 37 H 0.13 1.77 5.40 -52.49 -0.28 1.48 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.06 0.90 6.87 -51.93 -0.36 0.54 16 44 H 0.04 0.77 6.41 -51.93 -0.33 0.44 16 45 H 0.08 1.48 6.13 -51.93 -0.32 1.16 16 LS Contribution 344.73 15.07 5.20 5.20 Total: -1.00 -26.96 344.73 -10.20 -37.16 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.11 Total: 3.74 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -2.80 Total: -21.59 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.27 Total: -35.21 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.19 Total: -4.92 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.96 -10.20 -37.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.232 kcal (2) G-P(sol) polarization free energy of solvation -26.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds