Wall clock time and date at job start Tue Mar 31 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47531 * 2 1 4 4 H 1.09002 * 109.47018 * 57.78292 * 3 2 1 5 5 C 1.50696 * 109.47071 * 177.78013 * 3 2 1 6 6 H 1.08001 * 120.00007 * 119.99886 * 5 3 2 7 7 C 1.37880 * 120.00011 * 300.00025 * 5 3 2 8 8 N 1.31520 * 120.00086 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99909 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47253 * 60.00005 * 9 7 5 11 11 H 1.48499 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47101 * 299.99750 * 9 7 5 13 13 N 1.46898 * 109.46918 * 297.78092 * 3 2 1 14 14 C 1.46849 * 110.99642 * 170.88801 * 13 3 2 15 15 C 1.53042 * 109.52105 * 185.83892 * 14 13 3 16 16 C 1.53116 * 109.27695 * 300.82130 * 15 14 13 17 17 O 1.42900 * 109.52246 * 177.56498 * 16 15 14 18 18 C 1.35895 * 117.00460 * 155.64452 * 17 16 15 19 19 C 1.38736 * 120.05483 * 5.38743 * 18 17 16 20 20 C 1.38145 * 119.94661 * 179.97438 * 19 18 17 21 21 C 1.38271 * 120.05329 * 359.97438 * 20 19 18 22 22 C 1.38264 * 120.10894 * 0.04267 * 21 20 19 23 23 C 1.38137 * 120.06039 * 359.95490 * 22 21 20 24 24 C 1.53119 * 109.16379 * 57.65341 * 16 15 14 25 25 C 1.46846 * 111.00076 * 295.09605 * 13 3 2 26 26 H 1.09004 * 109.47242 * 300.00402 * 1 2 3 27 27 H 1.09008 * 109.46542 * 59.99587 * 1 2 3 28 28 H 1.08992 * 109.47708 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46946 * 239.99682 * 2 1 3 30 30 H 1.09008 * 109.46542 * 120.00413 * 2 1 3 31 31 H 0.97001 * 119.99655 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.46248 * 65.82421 * 14 13 3 33 33 H 1.09006 * 109.46173 * 305.85173 * 14 13 3 34 34 H 1.08998 * 109.50080 * 180.87953 * 15 14 13 35 35 H 1.09000 * 109.50413 * 60.76338 * 15 14 13 36 36 H 1.09002 * 109.52308 * 297.68491 * 16 15 14 37 37 H 1.07999 * 120.02711 * 359.70153 * 19 18 17 38 38 H 1.07998 * 119.97527 * 179.97438 * 20 19 18 39 39 H 1.07996 * 119.93895 * 179.97438 * 21 20 19 40 40 H 1.08007 * 119.96956 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.03172 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.50148 * 62.28468 * 24 16 15 43 43 H 1.08998 * 109.50263 * 182.39972 * 24 16 15 44 44 H 1.09005 * 109.46188 * 294.17959 * 25 13 3 45 45 H 1.08994 * 109.46456 * 54.14505 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6447 1.9677 0.8695 5 6 3.5461 1.4427 0.0550 6 1 4.1154 1.8999 -0.7407 7 6 4.1970 0.8592 1.1212 8 7 3.5037 0.3019 2.0900 9 14 6.0638 0.8601 1.1898 10 1 6.5584 2.2602 1.1902 11 1 6.5140 0.1763 2.4287 12 1 6.6030 0.1449 0.0053 13 7 1.5947 2.1193 -1.2254 14 6 1.8779 3.5589 -1.1639 15 6 1.2728 4.2518 -2.3870 16 6 1.8743 3.6481 -3.6591 17 8 1.2714 4.2519 -4.8054 18 6 1.9893 4.2386 -5.9591 19 6 3.1980 3.5600 -6.0176 20 6 3.9257 3.5475 -7.1918 21 6 3.4502 4.2102 -8.3083 22 6 2.2461 4.8875 -8.2524 23 6 1.5146 4.9029 -7.0807 24 6 1.6074 2.1405 -3.6748 25 6 2.2028 1.5088 -2.4144 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0275 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5140 0.8900 31 1 3.9618 -0.1083 2.8402 32 1 2.9563 3.7168 -1.1536 33 1 1.4411 3.9765 -0.2567 34 1 1.4965 5.3179 -2.3490 35 1 0.1926 4.1060 -2.3905 36 1 2.9491 3.8290 -3.6751 37 1 3.5718 3.0456 -5.1447 38 1 4.8668 3.0198 -7.2377 39 1 4.0208 4.1996 -9.2252 40 1 1.8769 5.4047 -9.1258 41 1 0.5743 5.4325 -7.0375 42 1 0.5325 1.9614 -3.6986 43 1 2.0702 1.6982 -4.5570 44 1 3.2798 1.6763 -2.3982 45 1 2.0021 0.4375 -2.4156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:55 Heat of formation + Delta-G solvation = -30.997286 kcal Electronic energy + Delta-G solvation = -23611.398876 eV Core-core repulsion = 20400.043346 eV Total energy + Delta-G solvation = -3211.355531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42316 -39.81476 -38.25155 -35.85564 -33.72266 -32.34038 -31.76727 -31.62145 -30.47181 -28.32791 -25.67942 -24.48167 -24.03066 -23.40380 -22.67668 -21.19031 -20.69223 -19.20394 -18.34783 -17.46720 -16.87972 -16.67281 -16.22568 -16.06978 -15.65515 -15.43476 -15.13828 -14.71595 -14.67395 -14.34847 -14.19075 -13.91875 -13.59493 -13.39247 -13.22298 -12.97999 -12.87837 -12.61894 -12.59895 -12.46719 -12.24060 -12.14106 -12.04692 -11.62180 -11.58124 -11.53024 -11.39577 -10.98594 -10.97595 -10.42593 -9.92343 -9.11870 -8.93670 -8.03252 -6.25655 0.41448 0.52396 1.37122 1.38543 1.45056 2.20066 2.39416 2.87476 3.15313 3.36081 3.70615 3.78703 3.95706 3.98769 4.08988 4.28493 4.30072 4.39951 4.49973 4.52699 4.56714 4.59789 4.67816 4.76027 4.83112 4.86110 4.89102 4.92948 5.00817 5.07509 5.11450 5.19797 5.28937 5.30827 5.43805 5.44814 5.51242 5.52180 5.62362 5.64011 5.80249 5.91476 6.06500 6.19229 6.38151 6.49843 6.65877 6.94885 7.45246 8.91677 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.004148 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.601945 B = 6748.225728 C = 7547.112161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.221 3.779 4 H 0.006 0.994 5 C -0.553 4.553 6 H 0.050 0.950 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 0.942 3.058 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.530 5.530 14 C 0.068 3.932 15 C -0.097 4.097 16 C 0.095 3.905 17 O -0.320 6.320 18 C 0.111 3.889 19 C -0.226 4.226 20 C -0.089 4.089 21 C -0.164 4.164 22 C -0.081 4.081 23 C -0.169 4.169 24 C -0.126 4.126 25 C 0.071 3.929 26 H 0.033 0.967 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.031 0.969 30 H 0.061 0.939 31 H 0.261 0.739 32 H 0.020 0.980 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.122 0.878 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.137 0.863 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.021 0.979 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 7.277 -17.722 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.114 3.886 4 H 0.024 0.976 5 C -0.592 4.592 6 H 0.068 0.932 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.254 5.254 14 C -0.061 4.061 15 C -0.135 4.135 16 C 0.039 3.961 17 O -0.234 6.234 18 C 0.066 3.934 19 C -0.244 4.244 20 C -0.107 4.107 21 C -0.182 4.182 22 C -0.099 4.099 23 C -0.188 4.188 24 C -0.164 4.164 25 C -0.058 4.058 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.140 0.860 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.174 0.826 41 H 0.155 0.845 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.039 0.961 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.102 7.201 -17.523 19.197 hybrid contribution 2.228 -0.311 0.911 2.427 sum -0.874 6.890 -16.612 18.005 Atomic orbital electron populations 1.21571 0.96278 0.99722 1.00788 1.21440 0.94444 0.98159 1.00310 1.19034 0.91449 0.91439 0.86718 0.97557 1.21940 0.93954 1.37044 1.06222 0.93171 1.25570 1.01704 0.94944 0.95379 1.69991 1.36442 1.38120 1.10328 0.85860 0.81735 0.78139 0.77394 1.20121 1.20947 1.19944 1.62381 1.57681 1.02174 1.03156 1.21815 0.97682 0.89214 0.97352 1.21561 1.01655 0.99572 0.90741 1.22439 0.96991 0.92836 0.83883 1.86072 1.44673 1.75578 1.17084 1.19384 0.91279 0.95766 0.86971 1.21491 0.96788 1.05455 1.00703 1.21268 0.99564 0.97739 0.92145 1.21416 0.97529 0.99882 0.99356 1.21331 0.94038 0.97366 0.97141 1.20736 1.02812 1.03531 0.91689 1.22069 1.02541 0.94309 0.97476 1.21792 0.95797 0.98828 0.89376 0.94758 0.92398 0.93718 0.95054 0.92010 0.92931 0.96182 0.91283 0.89898 0.90201 0.91740 0.86001 0.84347 0.83387 0.82561 0.84508 0.90633 0.90904 0.96118 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 9.78 71.98 0.70 -4.27 16 2 C -0.11 -4.92 5.07 30.59 0.16 -4.77 16 3 C 0.22 10.73 1.74 44.17 0.08 10.80 16 4 H 0.01 0.36 8.00 -2.39 -0.02 0.34 16 5 C -0.55 -29.12 7.22 25.60 0.18 -28.94 16 6 H 0.05 2.65 5.84 -2.91 -0.02 2.63 16 7 C 0.02 1.30 5.30 84.65 0.45 1.75 16 8 N -0.91 -51.19 11.30 21.45 0.24 -50.95 16 9 Si 0.94 42.88 29.54 68.60 2.03 44.91 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 13 N -0.53 -21.49 3.94 -875.52 -3.45 -24.95 16 14 C 0.07 2.52 5.18 86.33 0.45 2.97 16 15 C -0.10 -2.93 5.75 30.65 0.18 -2.75 16 16 C 0.09 2.82 2.18 30.67 0.07 2.88 16 17 O -0.32 -9.39 9.81 -92.37 -0.91 -10.29 16 18 C 0.11 2.97 6.60 22.51 0.15 3.12 16 19 C -0.23 -5.75 8.26 22.37 0.18 -5.57 16 20 C -0.09 -1.85 10.04 22.26 0.22 -1.63 16 21 C -0.16 -2.84 10.04 22.28 0.22 -2.62 16 22 C -0.08 -1.41 10.04 22.25 0.22 -1.18 16 23 C -0.17 -3.75 9.99 22.36 0.22 -3.52 16 24 C -0.13 -3.89 5.37 30.64 0.16 -3.73 16 25 C 0.07 2.65 4.79 86.32 0.41 3.06 16 26 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.06 2.17 7.67 -2.38 -0.02 2.15 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.03 1.44 6.30 -2.39 -0.02 1.42 16 30 H 0.06 3.28 6.01 -2.38 -0.01 3.27 16 31 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.02 0.81 7.23 -2.39 -0.02 0.79 16 33 H 0.07 2.58 8.03 -2.38 -0.02 2.56 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.06 1.97 6.34 -2.39 -0.02 1.95 16 37 H 0.12 3.25 5.40 -2.91 -0.02 3.24 16 38 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 42 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.07 2.09 6.87 -2.39 -0.02 2.07 16 44 H 0.02 0.85 6.41 -2.38 -0.02 0.83 16 45 H 0.07 2.65 6.13 -2.39 -0.01 2.63 16 Total: -1.00 -58.53 344.73 2.94 -55.59 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.96 Total: 20.09 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 4.06 Total: -34.40 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -3.21 Total: -75.90 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.91 Total: -10.29 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -58.53 2.94 -55.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.591 kcal (2) G-P(sol) polarization free energy of solvation -58.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds