Wall clock time and date at job start Tue Mar 31 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 H 1.09001 * 109.47063 * 304.04099 * 3 2 1 5 5 C 1.50699 * 109.46950 * 184.04060 * 3 2 1 6 6 H 1.08001 * 119.99540 * 239.99549 * 5 3 2 7 7 C 1.37879 * 120.00094 * 60.00879 * 5 3 2 8 8 N 1.31508 * 119.99932 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99911 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47156 * 89.99531 * 9 7 5 11 11 H 1.48499 * 109.47142 * 209.99337 * 9 7 5 12 12 H 1.48497 * 109.47453 * 329.99662 * 9 7 5 13 13 N 1.46900 * 109.47121 * 64.04127 * 3 2 1 14 14 C 1.46845 * 111.00170 * 65.83665 * 13 3 2 15 15 C 1.53037 * 109.52866 * 185.83939 * 14 13 3 16 16 C 1.53112 * 109.27706 * 300.82440 * 15 14 13 17 17 O 1.42901 * 109.52334 * 177.55259 * 16 15 14 18 18 C 1.35899 * 116.99840 * 151.58763 * 17 16 15 19 19 C 1.38727 * 120.05776 * 5.60043 * 18 17 16 20 20 C 1.38152 * 119.94699 * 179.97438 * 19 18 17 21 21 C 1.38260 * 120.05257 * 359.97438 * 20 19 18 22 22 C 1.38266 * 120.11350 * 0.04363 * 21 20 19 23 23 C 1.38146 * 120.05913 * 359.95680 * 22 21 20 24 24 C 1.53123 * 109.16084 * 57.65184 * 16 15 14 25 25 C 1.46842 * 111.00322 * 190.05120 * 13 3 2 26 26 H 1.08998 * 109.46754 * 304.19149 * 1 2 3 27 27 H 1.08996 * 109.47120 * 64.19916 * 1 2 3 28 28 H 1.09002 * 109.46657 * 184.19876 * 1 2 3 29 29 H 1.09006 * 109.47007 * 240.00498 * 2 1 3 30 30 H 1.08995 * 109.47371 * 120.00260 * 2 1 3 31 31 H 0.96997 * 120.00149 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46082 * 65.82225 * 14 13 3 33 33 H 1.09004 * 109.46427 * 305.85941 * 14 13 3 34 34 H 1.09001 * 109.50667 * 180.87744 * 15 14 13 35 35 H 1.09003 * 109.49990 * 60.75983 * 15 14 13 36 36 H 1.08999 * 109.52324 * 297.68502 * 16 15 14 37 37 H 1.08003 * 120.02735 * 359.70092 * 19 18 17 38 38 H 1.08000 * 119.97314 * 180.02562 * 20 19 18 39 39 H 1.08003 * 119.94384 * 180.02562 * 21 20 19 40 40 H 1.08006 * 119.97558 * 179.97438 * 22 21 20 41 41 H 1.07995 * 120.03416 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.50574 * 62.28832 * 24 16 15 43 43 H 1.09002 * 109.50237 * 182.40391 * 24 16 15 44 44 H 1.09003 * 109.45727 * 294.17498 * 25 13 3 45 45 H 1.09004 * 109.46269 * 54.14038 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6188 1.9768 -0.8516 5 6 3.5437 1.4436 -0.1001 6 1 4.1366 1.8926 0.6830 7 6 4.1624 0.8717 -1.1915 8 7 3.4403 0.3248 -2.1449 9 14 6.0262 0.8738 -1.3159 10 1 6.5662 -0.3542 -0.6789 11 1 6.4269 0.9070 -2.7455 12 1 6.5674 2.0701 -0.6223 13 7 1.6317 2.1063 1.2453 14 6 2.2921 1.4977 2.4071 15 6 1.7358 2.1139 3.6927 16 6 1.9812 3.6251 3.6762 17 8 1.4133 4.2140 4.8479 18 6 1.9967 5.3502 5.3121 19 6 3.0177 5.9517 4.5908 20 6 3.6089 7.1070 5.0645 21 6 3.1833 7.6640 6.2563 22 6 2.1662 7.0663 6.9773 23 6 1.5718 5.9109 6.5079 24 6 1.3242 4.2274 2.4311 25 6 1.8925 3.5500 1.1821 26 1 -0.3633 0.5775 0.8500 27 1 -0.3633 0.4473 -0.9252 28 1 -0.3633 -1.0250 0.0752 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8756 -0.0778 -2.9126 32 1 3.3653 1.6802 2.3516 33 1 2.1063 0.4236 2.4091 34 1 2.2373 1.6731 4.5542 35 1 0.6650 1.9198 3.7555 36 1 3.0534 3.8198 3.6537 37 1 3.3532 5.5147 3.6618 38 1 4.4035 7.5758 4.5031 39 1 3.6464 8.5674 6.6248 40 1 1.8358 7.5031 7.9081 41 1 0.7771 5.4446 7.0711 42 1 0.2470 4.0666 2.4741 43 1 1.5317 5.2968 2.3914 44 1 2.9675 3.7229 1.1325 45 1 1.4164 3.9666 0.2945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:58 Heat of formation + Delta-G solvation = -17.471177 kcal Electronic energy + Delta-G solvation = -23562.628418 eV Core-core repulsion = 20351.859424 eV Total energy + Delta-G solvation = -3210.768995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.32090 -38.47111 -37.06746 -34.20947 -31.85085 -31.07962 -30.76158 -30.06833 -29.47290 -26.47967 -24.13700 -22.98141 -22.81344 -22.21274 -21.51284 -19.69538 -19.03532 -18.18406 -16.55451 -16.12918 -15.69440 -15.36038 -14.92512 -14.57516 -14.34010 -14.12468 -13.61187 -13.57386 -13.29049 -13.04445 -12.78992 -12.52624 -12.22997 -11.83812 -11.71677 -11.66320 -11.47092 -11.17663 -11.09145 -10.87984 -10.78306 -10.62938 -10.46343 -10.35859 -10.04721 -9.80630 -9.66847 -9.39410 -9.10526 -9.05545 -8.40196 -8.15925 -7.17992 -6.03038 -4.16816 1.28089 1.41936 3.22984 3.29977 3.30854 3.32751 3.75201 4.35414 4.78106 4.84187 4.87647 5.04804 5.06614 5.10378 5.21868 5.30658 5.34816 5.39856 5.58277 5.69995 5.90611 5.93834 6.00996 6.04334 6.15975 6.19917 6.31474 6.32851 6.39118 6.46507 6.46584 6.48024 6.55610 6.67018 6.69265 6.75705 6.80605 7.10097 7.16983 7.32859 7.54921 7.57079 7.73135 7.93061 8.11011 8.26916 8.42762 8.92965 9.51075 10.96188 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.004095 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.026195 B = 6835.522086 C = 7788.296530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.534 5.534 14 C 0.065 3.935 15 C -0.111 4.111 16 C 0.086 3.914 17 O -0.311 6.311 18 C 0.140 3.860 19 C -0.211 4.211 20 C -0.080 4.080 21 C -0.168 4.168 22 C -0.084 4.084 23 C -0.160 4.160 24 C -0.136 4.136 25 C 0.067 3.933 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.025 0.975 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.261 0.739 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 9.570 13.459 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.057 0.943 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.258 5.258 14 C -0.064 4.064 15 C -0.149 4.149 16 C 0.031 3.969 17 O -0.225 6.225 18 C 0.094 3.906 19 C -0.229 4.229 20 C -0.098 4.098 21 C -0.186 4.186 22 C -0.102 4.102 23 C -0.179 4.179 24 C -0.174 4.174 25 C -0.062 4.062 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.193 9.286 13.380 16.596 hybrid contribution 2.189 0.160 -0.452 2.241 sum -1.004 9.446 12.928 16.043 Atomic orbital electron populations 1.21724 0.98825 0.98534 1.00625 1.21599 0.92274 0.99081 1.01932 1.19267 0.92910 0.91217 0.85777 0.94338 1.21727 0.92768 1.38076 1.05874 0.92606 1.24897 0.97819 0.95005 0.95587 1.69866 1.34886 1.37874 1.09584 0.86698 0.86256 0.78381 0.77277 1.20656 1.21162 1.20126 1.62412 1.57255 1.01487 1.04650 1.21878 0.96712 0.99207 0.88558 1.21753 1.02945 0.91362 0.98801 1.22677 0.97242 0.94206 0.82819 1.86126 1.55156 1.36757 1.44449 1.19109 0.91870 0.86757 0.92880 1.21428 1.00011 0.99043 1.02445 1.20970 0.98477 0.94714 0.95633 1.21011 0.99678 1.01439 0.96486 1.20926 0.95545 0.94485 0.99233 1.20458 1.03627 0.98176 0.95640 1.22153 1.01938 0.98940 0.94349 1.21784 0.98636 0.90077 0.95705 0.93097 0.94333 0.95615 0.89000 0.94888 0.92847 0.94216 0.90234 0.91769 0.90600 0.91261 0.85033 0.85983 0.86242 0.85714 0.85435 0.90537 0.92094 0.94609 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.84 37.16 0.37 -2.42 16 2 C -0.11 -2.53 5.14 -26.73 -0.14 -2.67 16 3 C 0.21 5.06 1.72 -68.86 -0.12 4.95 16 4 H 0.04 1.02 7.99 -51.93 -0.41 0.60 16 5 C -0.55 -14.02 7.23 -34.44 -0.25 -14.27 16 6 H 0.06 1.44 5.84 -52.49 -0.31 1.13 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.88 -24.26 11.30 55.43 0.63 -23.63 16 9 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.53 -10.68 3.94 -228.08 -0.90 -11.58 16 14 C 0.07 1.21 4.78 -3.84 -0.02 1.19 16 15 C -0.11 -1.73 5.75 -26.65 -0.15 -1.88 16 16 C 0.09 1.31 2.16 -26.61 -0.06 1.25 16 17 O -0.31 -4.72 9.79 -19.42 -0.19 -4.91 16 18 C 0.14 1.95 6.64 -39.22 -0.26 1.69 16 19 C -0.21 -2.77 8.46 -39.43 -0.33 -3.10 16 20 C -0.08 -0.91 10.04 -39.60 -0.40 -1.30 16 21 C -0.17 -1.72 10.04 -39.56 -0.40 -2.12 16 22 C -0.08 -0.86 10.04 -39.60 -0.40 -1.26 16 23 C -0.16 -1.94 9.99 -39.43 -0.39 -2.33 16 24 C -0.14 -2.11 5.48 -26.65 -0.15 -2.25 16 25 C 0.07 1.23 5.19 -3.84 -0.02 1.21 16 26 H 0.05 0.98 7.61 -51.93 -0.40 0.58 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 2.37 5.97 -51.93 -0.31 2.06 16 30 H 0.03 0.74 6.26 -51.93 -0.33 0.41 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.04 0.80 6.37 -51.93 -0.33 0.47 16 33 H 0.08 1.52 6.14 -51.93 -0.32 1.20 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.06 6.08 -51.93 -0.32 0.74 16 37 H 0.13 1.74 5.56 -52.48 -0.29 1.45 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.06 0.88 7.32 -51.93 -0.38 0.50 16 44 H 0.04 0.70 7.30 -51.93 -0.38 0.33 16 45 H 0.07 1.30 8.01 -51.93 -0.42 0.89 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -26.99 345.38 -10.21 -37.20 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.12 Total: 3.68 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -2.81 Total: -21.58 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.27 Total: -35.21 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.19 Total: -4.91 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.99 -10.21 -37.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.732 kcal (2) G-P(sol) polarization free energy of solvation -26.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds