Wall clock time and date at job start Tue Mar 31 2020 05:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 H 1.09001 * 109.47063 * 304.04099 * 3 2 1 5 5 C 1.50699 * 109.46950 * 184.04060 * 3 2 1 6 6 H 1.08001 * 119.99540 * 239.99549 * 5 3 2 7 7 C 1.37879 * 120.00094 * 60.00879 * 5 3 2 8 8 N 1.31508 * 119.99932 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99911 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47156 * 89.99531 * 9 7 5 11 11 H 1.48499 * 109.47142 * 209.99337 * 9 7 5 12 12 H 1.48497 * 109.47453 * 329.99662 * 9 7 5 13 13 N 1.46900 * 109.47121 * 64.04127 * 3 2 1 14 14 C 1.46845 * 111.00170 * 65.83665 * 13 3 2 15 15 C 1.53037 * 109.52866 * 185.83939 * 14 13 3 16 16 C 1.53112 * 109.27706 * 300.82440 * 15 14 13 17 17 O 1.42901 * 109.52334 * 177.55259 * 16 15 14 18 18 C 1.35899 * 116.99840 * 151.58763 * 17 16 15 19 19 C 1.38727 * 120.05776 * 5.60043 * 18 17 16 20 20 C 1.38152 * 119.94699 * 179.97438 * 19 18 17 21 21 C 1.38260 * 120.05257 * 359.97438 * 20 19 18 22 22 C 1.38266 * 120.11350 * 0.04363 * 21 20 19 23 23 C 1.38146 * 120.05913 * 359.95680 * 22 21 20 24 24 C 1.53123 * 109.16084 * 57.65184 * 16 15 14 25 25 C 1.46842 * 111.00322 * 190.05120 * 13 3 2 26 26 H 1.08998 * 109.46754 * 304.19149 * 1 2 3 27 27 H 1.08996 * 109.47120 * 64.19916 * 1 2 3 28 28 H 1.09002 * 109.46657 * 184.19876 * 1 2 3 29 29 H 1.09006 * 109.47007 * 240.00498 * 2 1 3 30 30 H 1.08995 * 109.47371 * 120.00260 * 2 1 3 31 31 H 0.96997 * 120.00149 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46082 * 65.82225 * 14 13 3 33 33 H 1.09004 * 109.46427 * 305.85941 * 14 13 3 34 34 H 1.09001 * 109.50667 * 180.87744 * 15 14 13 35 35 H 1.09003 * 109.49990 * 60.75983 * 15 14 13 36 36 H 1.08999 * 109.52324 * 297.68502 * 16 15 14 37 37 H 1.08003 * 120.02735 * 359.70092 * 19 18 17 38 38 H 1.08000 * 119.97314 * 180.02562 * 20 19 18 39 39 H 1.08003 * 119.94384 * 180.02562 * 21 20 19 40 40 H 1.08006 * 119.97558 * 179.97438 * 22 21 20 41 41 H 1.07995 * 120.03416 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.50574 * 62.28832 * 24 16 15 43 43 H 1.09002 * 109.50237 * 182.40391 * 24 16 15 44 44 H 1.09003 * 109.45727 * 294.17498 * 25 13 3 45 45 H 1.09004 * 109.46269 * 54.14038 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6188 1.9768 -0.8516 5 6 3.5437 1.4436 -0.1001 6 1 4.1366 1.8926 0.6830 7 6 4.1624 0.8717 -1.1915 8 7 3.4403 0.3248 -2.1449 9 14 6.0262 0.8738 -1.3159 10 1 6.5662 -0.3542 -0.6789 11 1 6.4269 0.9070 -2.7455 12 1 6.5674 2.0701 -0.6223 13 7 1.6317 2.1063 1.2453 14 6 2.2921 1.4977 2.4071 15 6 1.7358 2.1139 3.6927 16 6 1.9812 3.6251 3.6762 17 8 1.4133 4.2140 4.8479 18 6 1.9967 5.3502 5.3121 19 6 3.0177 5.9517 4.5908 20 6 3.6089 7.1070 5.0645 21 6 3.1833 7.6640 6.2563 22 6 2.1662 7.0663 6.9773 23 6 1.5718 5.9109 6.5079 24 6 1.3242 4.2274 2.4311 25 6 1.8925 3.5500 1.1821 26 1 -0.3633 0.5775 0.8500 27 1 -0.3633 0.4473 -0.9252 28 1 -0.3633 -1.0250 0.0752 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8756 -0.0778 -2.9126 32 1 3.3653 1.6802 2.3516 33 1 2.1063 0.4236 2.4091 34 1 2.2373 1.6731 4.5542 35 1 0.6650 1.9198 3.7555 36 1 3.0534 3.8198 3.6537 37 1 3.3532 5.5147 3.6618 38 1 4.4035 7.5758 4.5031 39 1 3.6464 8.5674 6.6248 40 1 1.8358 7.5031 7.9081 41 1 0.7771 5.4446 7.0711 42 1 0.2470 4.0666 2.4741 43 1 1.5317 5.2968 2.3914 44 1 2.9675 3.7229 1.1325 45 1 1.4164 3.9666 0.2945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:57 Heat of formation + Delta-G solvation = -30.544330 kcal Electronic energy + Delta-G solvation = -23563.195313 eV Core-core repulsion = 20351.859424 eV Total energy + Delta-G solvation = -3211.335889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41191 -39.82044 -38.25121 -35.85701 -33.71496 -32.28497 -31.98549 -31.43224 -30.51067 -28.32403 -25.68306 -24.39834 -24.18853 -23.30431 -22.69925 -21.21890 -20.68319 -19.23602 -18.32380 -17.40683 -16.90381 -16.66979 -16.32615 -15.94613 -15.63389 -15.48198 -15.13749 -14.78617 -14.68295 -14.31864 -14.13087 -13.85900 -13.74121 -13.36677 -13.23315 -12.98907 -12.77468 -12.71815 -12.58855 -12.44043 -12.23782 -12.11190 -12.07437 -11.75249 -11.55971 -11.47103 -11.26602 -11.07032 -10.95337 -10.42393 -9.92751 -9.12086 -8.93683 -8.03272 -6.25781 0.41149 0.52200 1.36071 1.38740 1.46208 2.20140 2.39379 2.87246 3.15243 3.35836 3.71292 3.77605 3.94985 3.97866 4.09616 4.27422 4.30640 4.40176 4.50076 4.52395 4.57856 4.59547 4.67556 4.76964 4.82276 4.85780 4.90461 4.93338 4.99492 5.07913 5.11247 5.19244 5.29546 5.31030 5.44085 5.45117 5.51466 5.52547 5.62197 5.64439 5.80858 5.91327 6.07375 6.19022 6.38345 6.49891 6.65983 6.95128 7.45242 8.91738 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.004095 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.026195 B = 6835.522086 C = 7788.296530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.552 4.552 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.530 5.530 14 C 0.070 3.930 15 C -0.101 4.101 16 C 0.093 3.907 17 O -0.320 6.320 18 C 0.111 3.889 19 C -0.226 4.226 20 C -0.089 4.089 21 C -0.164 4.164 22 C -0.081 4.081 23 C -0.169 4.169 24 C -0.122 4.122 25 C 0.069 3.931 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.021 0.979 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.122 0.878 38 H 0.139 0.861 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.137 0.863 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.019 0.981 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 10.917 15.695 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.591 4.591 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.254 5.254 14 C -0.059 4.059 15 C -0.139 4.139 16 C 0.037 3.963 17 O -0.234 6.234 18 C 0.066 3.934 19 C -0.245 4.245 20 C -0.107 4.107 21 C -0.182 4.182 22 C -0.099 4.099 23 C -0.188 4.188 24 C -0.160 4.160 25 C -0.060 4.060 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.140 0.860 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.174 0.826 41 H 0.155 0.845 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.037 0.963 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.061 10.646 15.635 19.161 hybrid contribution 2.159 -0.159 -1.083 2.421 sum -0.902 10.486 14.552 17.959 Atomic orbital electron populations 1.21585 0.96348 0.99952 1.00605 1.21443 0.94446 0.98097 1.00405 1.19035 0.91696 0.91594 0.86329 0.97753 1.21975 0.94017 1.37494 1.05601 0.93119 1.25570 1.01598 0.94972 0.95489 1.69993 1.36266 1.38631 1.09992 0.85794 0.81754 0.78358 0.77144 1.20241 1.20991 1.19877 1.62367 1.57104 1.02208 1.03732 1.21838 0.95661 0.99087 0.89294 1.21622 1.03047 0.91731 0.97490 1.22464 0.97035 0.93808 0.82968 1.86081 1.55543 1.37664 1.44087 1.19397 0.93003 0.86933 0.94090 1.21477 1.00545 1.00045 1.02433 1.21266 0.98810 0.94202 0.96394 1.21416 0.99126 1.01984 0.95668 1.21336 0.94844 0.93540 1.00143 1.20740 1.04055 0.98860 0.95125 1.21995 1.01589 0.99311 0.93061 1.21775 0.97721 0.89320 0.97148 0.92278 0.94976 0.93567 0.92004 0.94791 0.92944 0.96030 0.90807 0.90083 0.90264 0.91560 0.85990 0.84318 0.83375 0.82561 0.84517 0.90541 0.90863 0.96264 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 9.84 71.98 0.71 -4.32 16 2 C -0.11 -4.92 5.14 30.60 0.16 -4.76 16 3 C 0.22 10.73 1.72 44.17 0.08 10.80 16 4 H 0.00 0.25 7.99 -2.39 -0.02 0.23 16 5 C -0.55 -29.08 7.23 25.60 0.19 -28.90 16 6 H 0.05 2.68 5.84 -2.91 -0.02 2.66 16 7 C 0.02 1.28 5.30 84.66 0.45 1.73 16 8 N -0.91 -51.18 11.30 21.45 0.24 -50.94 16 9 Si 0.94 42.91 29.54 68.60 2.03 44.93 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 N -0.53 -21.53 3.94 -875.52 -3.45 -24.98 16 14 C 0.07 2.59 4.78 86.33 0.41 3.00 16 15 C -0.10 -3.07 5.75 30.64 0.18 -2.89 16 16 C 0.09 2.78 2.16 30.67 0.07 2.85 16 17 O -0.32 -9.38 9.79 -92.42 -0.90 -10.28 16 18 C 0.11 2.96 6.64 22.51 0.15 3.11 16 19 C -0.23 -5.74 8.46 22.37 0.19 -5.55 16 20 C -0.09 -1.83 10.04 22.25 0.22 -1.61 16 21 C -0.16 -2.83 10.04 22.28 0.22 -2.61 16 22 C -0.08 -1.40 10.04 22.25 0.22 -1.18 16 23 C -0.17 -3.74 9.99 22.37 0.22 -3.52 16 24 C -0.12 -3.73 5.48 30.65 0.17 -3.56 16 25 C 0.07 2.59 5.19 86.33 0.45 3.04 16 26 H 0.06 2.22 7.61 -2.39 -0.02 2.20 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 3.28 5.97 -2.38 -0.01 3.27 16 30 H 0.03 1.54 6.26 -2.39 -0.01 1.53 16 31 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 32 H 0.02 0.88 6.37 -2.39 -0.02 0.86 16 33 H 0.07 2.81 6.14 -2.39 -0.01 2.80 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.07 2.02 6.08 -2.39 -0.01 2.01 16 37 H 0.12 3.23 5.56 -2.91 -0.02 3.21 16 38 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 42 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.07 2.07 7.32 -2.39 -0.02 2.05 16 44 H 0.02 0.78 7.30 -2.39 -0.02 0.76 16 45 H 0.06 2.41 8.01 -2.39 -0.02 2.39 16 Total: -1.00 -58.62 345.38 2.95 -55.67 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.96 Total: 19.97 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 4.08 Total: -34.37 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -3.21 Total: -75.92 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.90 Total: -10.28 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -58.62 2.95 -55.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.122 kcal (2) G-P(sol) polarization free energy of solvation -58.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds