Wall clock time and date at job start Tue Mar 31 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47325 * 2 1 4 4 H 1.08999 * 109.46997 * 54.77529 * 3 2 1 5 5 C 1.50700 * 109.47218 * 174.77601 * 3 2 1 6 6 H 1.08002 * 119.99638 * 120.00355 * 5 3 2 7 7 C 1.37870 * 120.00053 * 300.00103 * 5 3 2 8 8 N 1.31515 * 120.00131 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99930 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47335 * 60.00018 * 9 7 5 11 11 H 1.48503 * 109.47142 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47192 * 299.99697 * 9 7 5 13 13 N 1.46899 * 109.46937 * 294.77836 * 3 2 1 14 14 C 1.46905 * 110.99828 * 138.96053 * 13 3 2 15 15 C 1.52994 * 110.73308 * 62.81513 * 14 13 3 16 16 O 1.42899 * 109.46828 * 299.41622 * 15 14 13 17 17 C 1.42908 * 113.99889 * 179.97438 * 16 15 14 18 18 C 1.54351 * 110.81998 * 299.18769 * 14 13 3 19 19 C 1.51372 * 105.16947 * 215.43131 * 18 14 13 20 20 C 1.38495 * 130.38732 * 197.19683 * 19 18 14 21 21 C 1.38106 * 120.21613 * 179.97438 * 20 19 18 22 22 C 1.38253 * 119.92885 * 359.97438 * 21 20 19 23 23 C 1.38103 * 119.94061 * 0.02562 * 22 21 20 24 24 C 1.38213 * 109.75871 * 17.18759 * 19 18 14 25 25 C 1.51366 * 109.76045 * 0.02562 * 24 19 18 26 26 H 1.09006 * 109.46721 * 304.99821 * 1 2 3 27 27 H 1.09001 * 109.47587 * 64.99694 * 1 2 3 28 28 H 1.09003 * 109.47553 * 185.00393 * 1 2 3 29 29 H 1.09000 * 109.47065 * 240.00160 * 2 1 3 30 30 H 1.09000 * 109.47440 * 120.00030 * 2 1 3 31 31 H 0.97002 * 120.00005 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00061 * 262.90532 * 13 3 2 33 33 H 1.08995 * 109.47172 * 59.41187 * 15 14 13 34 34 H 1.09000 * 109.47292 * 179.41475 * 15 14 13 35 35 H 1.08998 * 109.46976 * 179.97438 * 17 16 15 36 36 H 1.08998 * 109.46974 * 300.00052 * 17 16 15 37 37 H 1.09002 * 109.46877 * 60.00016 * 17 16 15 38 38 H 1.08995 * 110.30111 * 334.35664 * 18 14 13 39 39 H 1.09005 * 110.29994 * 96.50578 * 18 14 13 40 40 H 1.07999 * 119.89409 * 359.97438 * 20 19 18 41 41 H 1.07998 * 120.03268 * 179.97438 * 21 20 19 42 42 H 1.08005 * 120.02756 * 179.97438 * 22 21 20 43 43 H 1.07991 * 119.89221 * 179.97438 * 23 22 21 44 44 H 1.08999 * 110.30485 * 223.88067 * 25 24 19 45 45 H 1.09009 * 110.38484 * 101.77776 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9826 0.8395 5 6 3.5415 1.4444 0.1294 6 1 4.1496 1.8881 -0.6451 7 6 4.1387 0.8800 1.2364 8 7 3.3982 0.3394 2.1792 9 14 5.9998 0.8830 1.3970 10 1 6.4944 2.2833 1.3974 11 1 6.3881 0.2201 2.6679 12 1 6.5966 0.1476 0.2533 13 7 1.6560 2.0976 -1.2575 14 6 1.2089 3.4763 -1.0177 15 6 2.3453 4.3211 -0.4383 16 8 2.7676 3.7617 0.8069 17 6 3.8319 4.4791 1.4353 18 6 -0.0253 3.4994 -0.0910 19 6 -0.8759 4.6465 -0.5929 20 6 -1.9129 5.3299 0.0201 21 6 -2.5533 6.3596 -0.6409 22 6 -2.1582 6.7104 -1.9185 23 6 -1.1244 6.0301 -2.5314 24 6 -0.4815 4.9967 -1.8704 25 6 0.6608 4.1085 -2.3148 26 1 -0.3633 0.5895 0.8419 27 1 -0.3634 0.4343 -0.9313 28 1 -0.3634 -1.0237 0.0896 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8185 -0.0581 2.9579 32 1 2.4135 2.0739 -1.9236 33 1 3.1832 4.3300 -1.1354 34 1 1.9949 5.3408 -0.2784 35 1 4.0938 3.9917 2.3744 36 1 4.7005 4.4909 0.7769 37 1 3.5126 5.5022 1.6341 38 1 -0.5733 2.5604 -0.1675 39 1 0.2795 3.6775 0.9403 40 1 -2.2218 5.0567 1.0183 41 1 -3.3619 6.8902 -0.1602 42 1 -2.6582 7.5151 -2.4370 43 1 -0.8167 6.3045 -3.5295 44 1 1.4342 4.7023 -2.8018 45 1 0.2984 3.3334 -2.9903 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:01 Heat of formation + Delta-G solvation = -15.395617 kcal Electronic energy + Delta-G solvation = -24645.275425 eV Core-core repulsion = 21434.596433 eV Total energy + Delta-G solvation = -3210.678992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16916 -37.75887 -35.69554 -34.45193 -31.76914 -31.23630 -30.72792 -28.19000 -27.09545 -26.44717 -25.53618 -24.42491 -22.63176 -21.56557 -20.84646 -19.47513 -18.66276 -16.56395 -16.10605 -15.65393 -15.34022 -15.25085 -14.70922 -14.58649 -14.28967 -13.60973 -13.33498 -13.14930 -12.94719 -12.68130 -12.56592 -12.34961 -12.14400 -11.85174 -11.48700 -11.31340 -10.98034 -10.94994 -10.86006 -10.75764 -10.63173 -10.55568 -10.40988 -10.23640 -9.95229 -9.48021 -9.32178 -8.81922 -8.68657 -8.62920 -8.24293 -8.15082 -7.18286 -5.80586 -3.81849 1.54398 1.56991 3.32657 3.39380 3.41710 3.94241 4.44870 4.52332 4.75839 4.94234 5.09271 5.18364 5.26596 5.42070 5.49076 5.56416 5.70851 5.76826 5.81568 5.91577 5.99070 6.09284 6.10601 6.15339 6.21162 6.27717 6.44519 6.46909 6.47516 6.57329 6.58725 6.63671 6.64551 6.67566 6.80700 6.94393 7.18945 7.25076 7.37271 7.61808 7.73588 7.93357 8.07234 8.24182 8.31655 8.50820 8.80220 9.20166 9.76251 11.23337 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.005357 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.825244 B = 5225.601413 C = 5714.732170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.220 3.780 4 H 0.053 0.947 5 C -0.491 4.491 6 H 0.043 0.957 7 C 0.068 3.932 8 N -0.890 5.890 9 Si 0.873 3.127 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.282 1.282 13 N -0.674 5.674 14 C 0.129 3.871 15 C 0.047 3.953 16 O -0.323 6.323 17 C 0.042 3.958 18 C -0.070 4.070 19 C -0.081 4.081 20 C -0.112 4.112 21 C -0.125 4.125 22 C -0.131 4.131 23 C -0.111 4.111 24 C -0.093 4.093 25 C -0.071 4.071 26 H 0.036 0.964 27 H 0.044 0.956 28 H 0.022 0.978 29 H 0.027 0.973 30 H 0.089 0.911 31 H 0.256 0.744 32 H 0.329 0.671 33 H 0.037 0.963 34 H 0.028 0.972 35 H 0.078 0.922 36 H 0.028 0.972 37 H 0.017 0.983 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.067 0.933 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.639 10.438 -5.800 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C 0.113 3.887 4 H 0.071 0.929 5 C -0.530 4.530 6 H 0.062 0.938 7 C -0.132 4.132 8 N -0.530 5.530 9 Si 0.702 3.298 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.208 1.208 13 N -0.303 5.303 14 C 0.037 3.963 15 C -0.033 4.033 16 O -0.240 6.240 17 C -0.056 4.056 18 C -0.107 4.107 19 C -0.081 4.081 20 C -0.130 4.130 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.129 4.129 24 C -0.093 4.093 25 C -0.109 4.109 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.146 0.854 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.047 0.953 37 H 0.036 0.964 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.086 0.914 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.337 9.886 -5.528 14.064 hybrid contribution 2.234 0.845 0.281 2.405 sum -6.103 10.731 -5.247 13.413 Atomic orbital electron populations 1.21746 0.99525 0.98175 0.99969 1.21581 0.91667 1.00098 1.01428 1.19217 0.93478 0.90183 0.85860 0.92892 1.21436 0.92000 1.35279 1.04310 0.93832 1.24705 0.96398 0.96073 0.96051 1.69845 1.34012 1.39648 1.09537 0.87001 0.87849 0.77820 0.77128 1.20789 1.21605 1.20760 1.61082 1.42229 1.11463 1.15558 1.21383 0.92470 0.90108 0.92361 1.23030 0.96546 0.95532 0.88161 1.88477 1.51833 1.50289 1.33426 1.22498 0.90607 0.94334 0.98113 1.21176 0.93841 0.95887 0.99783 1.20846 0.95612 0.96748 0.94931 1.20651 0.96140 0.96228 0.99977 1.20961 1.00172 0.97899 0.95277 1.20925 0.97927 1.00382 0.95632 1.20576 0.96663 0.95981 0.99680 1.20638 0.97642 0.95946 0.95097 1.21094 0.94663 0.97157 0.97959 0.94517 0.93689 0.95870 0.95392 0.89235 0.93408 0.85394 0.94456 0.95400 0.90338 0.95312 0.96446 0.88697 0.90148 0.86446 0.86399 0.86452 0.86676 0.91449 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.83 37.16 0.33 -2.46 16 2 C -0.11 -2.57 5.45 -26.73 -0.15 -2.72 16 3 C 0.22 5.11 1.16 -68.86 -0.08 5.03 16 4 H 0.05 1.37 5.09 -51.93 -0.26 1.10 16 5 C -0.49 -12.47 6.03 -34.44 -0.21 -12.68 16 6 H 0.04 1.12 7.50 -52.49 -0.39 0.73 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.89 -24.69 11.29 55.43 0.63 -24.06 16 9 Si 0.87 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.67 -13.31 5.49 -92.82 -0.51 -13.82 16 14 C 0.13 2.27 0.76 -130.18 -0.10 2.17 16 15 C 0.05 0.86 4.74 37.15 0.18 1.03 16 16 O -0.32 -6.85 5.19 -35.23 -0.18 -7.04 16 17 C 0.04 0.79 11.00 101.05 1.11 1.90 16 18 C -0.07 -1.23 4.63 -26.85 -0.12 -1.35 16 19 C -0.08 -1.27 6.14 -104.21 -0.64 -1.91 16 20 C -0.11 -1.56 10.04 -39.54 -0.40 -1.96 16 21 C -0.13 -1.52 10.05 -39.62 -0.40 -1.92 16 22 C -0.13 -1.54 10.05 -39.63 -0.40 -1.94 16 23 C -0.11 -1.42 10.04 -39.53 -0.40 -1.82 16 24 C -0.09 -1.37 6.14 -104.21 -0.64 -2.01 16 25 C -0.07 -1.06 6.03 -26.84 -0.16 -1.22 16 26 H 0.04 0.75 7.75 -51.93 -0.40 0.34 16 27 H 0.04 0.87 7.64 -51.93 -0.40 0.48 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.33 6.51 8.11 -39.29 -0.32 6.19 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 1.76 6.41 -51.93 -0.33 1.43 16 39 H 0.08 1.55 7.10 -51.93 -0.37 1.18 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.07 0.91 7.91 -51.93 -0.41 0.50 16 45 H 0.09 1.38 8.08 -51.92 -0.42 0.96 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -27.30 348.25 -9.41 -36.71 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.40 Total: 7.26 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -2.17 Total: -20.13 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.12 Total: -37.88 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.18 Total: -7.04 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.30 -9.41 -36.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.313 kcal (2) G-P(sol) polarization free energy of solvation -27.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds