Wall clock time and date at job start Tue Mar 31 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47325 * 2 1 4 4 H 1.08999 * 109.46997 * 54.77529 * 3 2 1 5 5 C 1.50700 * 109.47218 * 174.77601 * 3 2 1 6 6 H 1.08002 * 119.99638 * 120.00355 * 5 3 2 7 7 C 1.37870 * 120.00053 * 300.00103 * 5 3 2 8 8 N 1.31515 * 120.00131 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99930 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47335 * 60.00018 * 9 7 5 11 11 H 1.48503 * 109.47142 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47192 * 299.99697 * 9 7 5 13 13 N 1.46899 * 109.46937 * 294.77836 * 3 2 1 14 14 C 1.46905 * 110.99828 * 138.96053 * 13 3 2 15 15 C 1.52994 * 110.73308 * 62.81513 * 14 13 3 16 16 O 1.42899 * 109.46828 * 299.41622 * 15 14 13 17 17 C 1.42908 * 113.99889 * 179.97438 * 16 15 14 18 18 C 1.54351 * 110.81998 * 299.18769 * 14 13 3 19 19 C 1.51372 * 105.16947 * 215.43131 * 18 14 13 20 20 C 1.38495 * 130.38732 * 197.19683 * 19 18 14 21 21 C 1.38106 * 120.21613 * 179.97438 * 20 19 18 22 22 C 1.38253 * 119.92885 * 359.97438 * 21 20 19 23 23 C 1.38103 * 119.94061 * 0.02562 * 22 21 20 24 24 C 1.38213 * 109.75871 * 17.18759 * 19 18 14 25 25 C 1.51366 * 109.76045 * 0.02562 * 24 19 18 26 26 H 1.09006 * 109.46721 * 304.99821 * 1 2 3 27 27 H 1.09001 * 109.47587 * 64.99694 * 1 2 3 28 28 H 1.09003 * 109.47553 * 185.00393 * 1 2 3 29 29 H 1.09000 * 109.47065 * 240.00160 * 2 1 3 30 30 H 1.09000 * 109.47440 * 120.00030 * 2 1 3 31 31 H 0.97002 * 120.00005 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00061 * 262.90532 * 13 3 2 33 33 H 1.08995 * 109.47172 * 59.41187 * 15 14 13 34 34 H 1.09000 * 109.47292 * 179.41475 * 15 14 13 35 35 H 1.08998 * 109.46976 * 179.97438 * 17 16 15 36 36 H 1.08998 * 109.46974 * 300.00052 * 17 16 15 37 37 H 1.09002 * 109.46877 * 60.00016 * 17 16 15 38 38 H 1.08995 * 110.30111 * 334.35664 * 18 14 13 39 39 H 1.09005 * 110.29994 * 96.50578 * 18 14 13 40 40 H 1.07999 * 119.89409 * 359.97438 * 20 19 18 41 41 H 1.07998 * 120.03268 * 179.97438 * 21 20 19 42 42 H 1.08005 * 120.02756 * 179.97438 * 22 21 20 43 43 H 1.07991 * 119.89221 * 179.97438 * 23 22 21 44 44 H 1.08999 * 110.30485 * 223.88067 * 25 24 19 45 45 H 1.09009 * 110.38484 * 101.77776 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9826 0.8395 5 6 3.5415 1.4444 0.1294 6 1 4.1496 1.8881 -0.6451 7 6 4.1387 0.8800 1.2364 8 7 3.3982 0.3394 2.1792 9 14 5.9998 0.8830 1.3970 10 1 6.4944 2.2833 1.3974 11 1 6.3881 0.2201 2.6679 12 1 6.5966 0.1476 0.2533 13 7 1.6560 2.0976 -1.2575 14 6 1.2089 3.4763 -1.0177 15 6 2.3453 4.3211 -0.4383 16 8 2.7676 3.7617 0.8069 17 6 3.8319 4.4791 1.4353 18 6 -0.0253 3.4994 -0.0910 19 6 -0.8759 4.6465 -0.5929 20 6 -1.9129 5.3299 0.0201 21 6 -2.5533 6.3596 -0.6409 22 6 -2.1582 6.7104 -1.9185 23 6 -1.1244 6.0301 -2.5314 24 6 -0.4815 4.9967 -1.8704 25 6 0.6608 4.1085 -2.3148 26 1 -0.3633 0.5895 0.8419 27 1 -0.3634 0.4343 -0.9313 28 1 -0.3634 -1.0237 0.0896 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8185 -0.0581 2.9579 32 1 2.4135 2.0739 -1.9236 33 1 3.1832 4.3300 -1.1354 34 1 1.9949 5.3408 -0.2784 35 1 4.0938 3.9917 2.3744 36 1 4.7005 4.4909 0.7769 37 1 3.5126 5.5022 1.6341 38 1 -0.5733 2.5604 -0.1675 39 1 0.2795 3.6775 0.9403 40 1 -2.2218 5.0567 1.0183 41 1 -3.3619 6.8902 -0.1602 42 1 -2.6582 7.5151 -2.4370 43 1 -0.8167 6.3045 -3.5295 44 1 1.4342 4.7023 -2.8018 45 1 0.2984 3.3334 -2.9903 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:00 Heat of formation + Delta-G solvation = -29.295438 kcal Electronic energy + Delta-G solvation = -24645.878167 eV Core-core repulsion = 21434.596433 eV Total energy + Delta-G solvation = -3211.281733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.38289 -39.13120 -37.26844 -36.02288 -33.60173 -32.42371 -32.18632 -29.69924 -28.32909 -27.95596 -27.23410 -25.85437 -24.48288 -22.65688 -22.00564 -21.10252 -20.19265 -18.44918 -17.34774 -17.03807 -16.72935 -16.63379 -16.55879 -15.85043 -15.61242 -15.23330 -14.81447 -14.62666 -14.41480 -14.02072 -13.86494 -13.66826 -13.52308 -13.25365 -13.07049 -13.03509 -12.87162 -12.54008 -12.49860 -12.22737 -12.03224 -11.96619 -11.93130 -11.63702 -11.55108 -11.36908 -11.06541 -10.71271 -10.30500 -10.15385 -9.63593 -9.33036 -8.88021 -7.83727 -5.90058 0.53139 0.55511 1.40265 1.43892 1.47570 2.53189 2.91703 3.05408 3.40600 3.52051 3.70353 3.90083 4.12596 4.18924 4.25410 4.33284 4.39255 4.46898 4.56858 4.64078 4.70982 4.73965 4.76396 4.81458 4.84294 4.91702 4.93402 5.01948 5.04479 5.06258 5.08657 5.30688 5.38042 5.45088 5.54562 5.61779 5.67743 5.71220 5.83193 5.86201 6.00427 6.19764 6.31865 6.41815 6.58544 6.59686 7.02264 7.26213 7.70837 9.17628 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.005357 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.825244 B = 5225.601413 C = 5714.732170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.108 4.108 3 C 0.233 3.767 4 H 0.028 0.972 5 C -0.484 4.484 6 H 0.039 0.961 7 C 0.027 3.973 8 N -0.918 5.918 9 Si 0.920 3.080 10 H -0.274 1.274 11 H -0.295 1.295 12 H -0.281 1.281 13 N -0.669 5.669 14 C 0.125 3.875 15 C 0.050 3.950 16 O -0.354 6.354 17 C 0.042 3.958 18 C -0.061 4.061 19 C -0.106 4.106 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.113 4.113 24 C -0.104 4.104 25 C -0.061 4.061 26 H 0.028 0.972 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.022 0.978 30 H 0.058 0.942 31 H 0.251 0.749 32 H 0.330 0.670 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.120 0.880 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.140 0.860 44 H 0.084 0.916 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.643 12.626 -7.664 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.147 4.147 3 C 0.125 3.875 4 H 0.046 0.954 5 C -0.524 4.524 6 H 0.057 0.943 7 C -0.170 4.170 8 N -0.560 5.560 9 Si 0.748 3.252 10 H -0.200 1.200 11 H -0.221 1.221 12 H -0.207 1.207 13 N -0.297 5.297 14 C 0.033 3.967 15 C -0.029 4.029 16 O -0.272 6.272 17 C -0.055 4.055 18 C -0.099 4.099 19 C -0.106 4.106 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.131 4.131 24 C -0.104 4.104 25 C -0.098 4.098 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.147 0.853 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.138 0.862 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.158 0.842 44 H 0.102 0.898 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.337 12.090 -7.411 16.978 hybrid contribution 2.477 0.241 0.846 2.629 sum -6.860 12.331 -6.565 15.563 Atomic orbital electron populations 1.21573 0.97109 0.99092 1.00163 1.21470 0.93837 0.99873 0.99499 1.18886 0.92087 0.89975 0.86545 0.95439 1.21646 0.93151 1.33916 1.03648 0.94283 1.25228 0.99385 0.96322 0.96108 1.69986 1.35133 1.40902 1.09946 0.86236 0.84311 0.77973 0.76647 1.19972 1.22104 1.20660 1.60972 1.41754 1.13182 1.13805 1.21490 0.92208 0.88839 0.94148 1.23072 0.96659 0.96056 0.87135 1.88431 1.52423 1.51657 1.34706 1.22513 0.90314 0.95410 0.97300 1.20957 0.94217 0.96365 0.98345 1.20729 0.96862 0.97083 0.95974 1.20858 0.96079 0.96911 1.00498 1.21322 1.00282 0.96983 0.95543 1.21368 0.97085 1.00427 0.95344 1.20897 0.96476 0.95027 1.00676 1.20673 0.97958 0.96874 0.94910 1.20966 0.95268 0.97364 0.96214 0.95254 0.92641 0.94360 0.95933 0.92390 0.93968 0.85328 0.94297 0.94294 0.91890 0.95254 0.93727 0.90423 0.92975 0.86151 0.83617 0.83120 0.84246 0.89800 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 8.83 71.98 0.64 -4.38 16 2 C -0.11 -5.21 5.45 30.59 0.17 -5.04 16 3 C 0.23 11.11 1.16 44.17 0.05 11.16 16 4 H 0.03 1.49 5.09 -2.39 -0.01 1.48 16 5 C -0.48 -24.99 6.03 25.60 0.15 -24.84 16 6 H 0.04 2.02 7.50 -2.91 -0.02 2.00 16 7 C 0.03 1.45 5.29 84.65 0.45 1.90 16 8 N -0.92 -52.55 11.29 21.44 0.24 -52.31 16 9 Si 0.92 43.32 29.54 68.60 2.03 45.35 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 N -0.67 -26.50 5.49 -447.58 -2.46 -28.96 16 14 C 0.13 4.38 0.76 4.45 0.00 4.38 16 15 C 0.05 1.80 4.74 71.98 0.34 2.14 16 16 O -0.35 -15.27 5.19 -148.98 -0.77 -16.04 16 17 C 0.04 1.57 11.00 113.37 1.25 2.82 16 18 C -0.06 -2.22 4.63 30.52 0.14 -2.07 16 19 C -0.11 -3.24 6.14 -19.60 -0.12 -3.36 16 20 C -0.13 -3.33 10.04 22.30 0.22 -3.10 16 21 C -0.12 -2.59 10.05 22.24 0.22 -2.37 16 22 C -0.12 -2.40 10.05 22.24 0.22 -2.18 16 23 C -0.11 -2.47 10.04 22.30 0.22 -2.25 16 24 C -0.10 -2.84 6.14 -19.60 -0.12 -2.96 16 25 C -0.06 -1.70 6.03 30.52 0.18 -1.52 16 26 H 0.03 1.22 7.75 -2.38 -0.02 1.20 16 27 H 0.05 2.14 7.64 -2.39 -0.02 2.12 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 3.19 5.95 -2.39 -0.01 3.17 16 31 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 32 H 0.33 12.96 8.11 -89.70 -0.73 12.23 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 2.99 6.41 -2.39 -0.02 2.97 16 39 H 0.05 2.12 7.10 -2.38 -0.02 2.10 16 40 H 0.12 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.14 2.34 8.06 -2.92 -0.02 2.32 16 44 H 0.08 2.05 7.91 -2.39 -0.02 2.03 16 45 H 0.10 2.64 8.08 -2.38 -0.02 2.62 16 Total: -1.00 -59.77 348.25 3.30 -56.47 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.24 Total: 27.17 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 4.03 Total: -31.67 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -2.21 Total: -81.27 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.77 Total: -16.04 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -59.77 3.30 -56.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.170 kcal (2) G-P(sol) polarization free energy of solvation -59.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds