Wall clock time and date at job start Tue Mar 31 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47330 * 2 1 4 4 H 1.08996 * 109.47261 * 183.02317 * 3 2 1 5 5 C 1.50698 * 109.47088 * 63.01642 * 3 2 1 6 6 H 1.07995 * 119.99783 * 243.62823 * 5 3 2 7 7 C 1.37875 * 119.99938 * 63.63014 * 5 3 2 8 8 N 1.31508 * 119.99747 * 196.72042 * 7 5 3 9 9 Si 1.86795 * 120.00011 * 16.72858 * 7 5 3 10 10 H 1.48504 * 109.47427 * 94.71195 * 9 7 5 11 11 H 1.48502 * 109.47364 * 214.71528 * 9 7 5 12 12 H 1.48503 * 109.47397 * 334.71272 * 9 7 5 13 13 N 1.46906 * 109.46732 * 303.01553 * 3 2 1 14 14 C 1.46891 * 111.00242 * 252.68904 * 13 3 2 15 15 C 1.53008 * 110.72660 * 294.33231 * 14 13 3 16 16 O 1.42899 * 109.46984 * 304.89201 * 15 14 13 17 17 C 1.42897 * 114.00107 * 175.35848 * 16 15 14 18 18 C 1.54344 * 110.82400 * 170.92853 * 14 13 3 19 19 C 1.51672 * 105.02070 * 215.56694 * 18 14 13 20 20 C 1.38504 * 130.30889 * 197.10041 * 19 18 14 21 21 C 1.38104 * 120.21659 * 179.79966 * 20 19 18 22 22 C 1.38259 * 119.93135 * 0.02562 * 21 20 19 23 23 C 1.38108 * 119.93574 * 359.97438 * 22 21 20 24 24 C 1.38219 * 109.84020 * 16.91458 * 19 18 14 25 25 C 1.51371 * 109.75658 * 0.16386 * 24 19 18 26 26 H 1.09005 * 109.47162 * 184.00501 * 1 2 3 27 27 H 1.08993 * 109.47311 * 304.00538 * 1 2 3 28 28 H 1.09001 * 109.47123 * 64.00735 * 1 2 3 29 29 H 1.08994 * 109.47441 * 239.99433 * 2 1 3 30 30 H 1.09008 * 109.46973 * 119.99365 * 2 1 3 31 31 H 0.97006 * 119.99845 * 180.02562 * 8 7 5 32 32 H 1.00900 * 110.99656 * 128.72789 * 13 3 2 33 33 H 1.08993 * 109.47216 * 64.89317 * 15 14 13 34 34 H 1.08999 * 109.47051 * 184.89557 * 15 14 13 35 35 H 1.08999 * 109.47544 * 184.69000 * 17 16 15 36 36 H 1.09004 * 109.47058 * 304.69343 * 17 16 15 37 37 H 1.09001 * 109.46917 * 64.68724 * 17 16 15 38 38 H 1.08998 * 110.30262 * 334.34676 * 18 14 13 39 39 H 1.09000 * 110.30255 * 96.49827 * 18 14 13 40 40 H 1.08003 * 119.89312 * 359.80086 * 20 19 18 41 41 H 1.07995 * 120.03716 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.03226 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.89254 * 179.97438 * 23 22 21 44 44 H 1.09001 * 110.29575 * 223.88860 * 25 24 19 45 45 H 1.09001 * 110.38603 * 101.77695 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1286 1.4430 -0.0542 5 6 1.5997 2.1310 1.2661 6 1 0.9277 2.9750 1.2162 7 6 2.0547 1.6835 2.4882 8 7 1.4395 2.0470 3.5922 9 14 3.5453 0.5610 2.5759 10 1 4.7648 1.3750 2.8115 11 1 3.3723 -0.4055 3.6900 12 1 3.6838 -0.1789 1.2958 13 7 1.4917 2.1557 -1.1614 14 6 2.5283 2.3833 -2.1769 15 6 3.6036 3.3353 -1.6492 16 8 2.9904 4.5471 -1.2048 17 6 3.8971 5.4676 -0.5944 18 6 1.9081 2.9256 -3.4821 19 6 2.7300 2.3047 -4.5955 20 6 2.8430 2.6583 -5.9298 21 6 3.6683 1.9392 -6.7719 22 6 4.3841 0.8624 -6.2823 23 6 4.2727 0.5084 -4.9520 24 6 3.4460 1.2286 -4.1059 25 6 3.1536 1.0475 -2.6318 26 1 -0.3634 -1.0252 0.0718 27 1 -0.3633 0.5747 0.8518 28 1 -0.3633 0.4504 -0.9237 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7598 1.7324 4.4521 32 1 1.0619 3.0248 -0.8821 33 1 4.1270 2.8663 -0.8162 34 1 4.3139 3.5584 -2.4453 35 1 3.3423 6.3236 -0.2104 36 1 4.4179 4.9743 0.2263 37 1 4.6228 5.8068 -1.3335 38 1 0.8666 2.6147 -3.5636 39 1 1.9827 4.0126 -3.5132 40 1 2.2838 3.4990 -6.3131 41 1 3.7539 2.2171 -7.8119 42 1 5.0297 0.2987 -6.9394 43 1 4.8319 -0.3331 -4.5703 44 1 4.0763 0.8558 -2.0840 45 1 2.4487 0.2296 -2.4822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:03 Heat of formation + Delta-G solvation = -17.787879 kcal Electronic energy + Delta-G solvation = -24300.117579 eV Core-core repulsion = 21089.334852 eV Total energy + Delta-G solvation = -3210.782728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.31030 -37.99116 -36.34859 -34.66061 -31.98172 -31.32595 -30.96691 -28.29368 -27.23985 -26.82479 -25.93687 -24.75993 -23.03667 -21.75828 -20.81989 -19.90155 -18.52328 -16.82392 -16.22662 -15.90721 -15.64477 -15.57538 -15.08201 -14.73125 -14.55080 -13.81226 -13.51765 -13.37128 -13.09755 -12.81076 -12.75361 -12.49865 -12.39190 -12.26521 -12.03004 -11.72382 -11.24898 -11.07992 -11.02489 -11.00436 -10.71942 -10.62380 -10.41942 -10.34770 -10.10056 -9.85969 -9.29243 -9.23471 -9.08909 -8.71855 -8.37225 -8.32512 -7.42760 -6.11279 -4.02927 1.45563 1.46728 3.24079 3.34770 3.36940 3.84252 4.05239 4.40570 4.59597 4.75963 4.99856 5.09387 5.13471 5.20844 5.24177 5.37491 5.52480 5.59274 5.60604 5.70948 5.73630 5.82138 5.93470 5.99212 6.03009 6.07431 6.10195 6.27205 6.29008 6.32750 6.42520 6.45159 6.52295 6.55460 6.61925 6.82236 6.92561 7.03508 7.08889 7.21524 7.39646 7.51222 7.55600 7.69780 8.02367 8.41392 8.65596 9.00901 9.56097 11.01902 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.005497 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.271516 B = 5092.831192 C = 5610.518744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 C 0.189 3.811 4 H 0.006 0.994 5 C -0.520 4.520 6 H 0.076 0.924 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.856 3.144 10 H -0.285 1.285 11 H -0.287 1.287 12 H -0.254 1.254 13 N -0.659 5.659 14 C 0.125 3.875 15 C 0.044 3.956 16 O -0.377 6.377 17 C 0.038 3.962 18 C -0.069 4.069 19 C -0.086 4.086 20 C -0.111 4.111 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.110 4.110 24 C -0.089 4.089 25 C -0.073 4.073 26 H 0.018 0.982 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.028 0.972 30 H 0.044 0.956 31 H 0.262 0.738 32 H 0.352 0.648 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.030 0.970 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.069 0.931 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 0.616 -16.386 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.080 3.920 4 H 0.024 0.976 5 C -0.558 4.558 6 H 0.094 0.906 7 C -0.123 4.123 8 N -0.527 5.527 9 Si 0.684 3.316 10 H -0.211 1.211 11 H -0.213 1.213 12 H -0.178 1.178 13 N -0.290 5.290 14 C 0.032 3.968 15 C -0.034 4.034 16 O -0.295 6.295 17 C -0.059 4.059 18 C -0.106 4.106 19 C -0.087 4.087 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.128 4.128 24 C -0.090 4.090 25 C -0.110 4.110 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.172 0.828 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.088 0.912 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.271 0.066 -16.476 17.299 hybrid contribution 1.875 0.039 0.766 2.026 sum 7.146 0.105 -15.710 17.259 Atomic orbital electron populations 1.21478 0.96134 0.98222 1.02548 1.21845 0.96753 0.97942 0.97883 1.19470 0.92793 0.91222 0.88518 0.97597 1.21188 1.29507 1.16129 0.88933 0.90567 1.24836 0.96296 0.95474 0.95711 1.69995 1.38547 1.46023 0.98105 0.87292 0.84460 0.81410 0.78485 1.21125 1.21311 1.17826 1.60791 1.27692 1.27323 1.13226 1.21443 0.90834 0.91728 0.92774 1.23149 0.96161 0.86239 0.97878 1.87805 1.35056 1.28108 1.78568 1.22648 0.93824 0.93167 0.96269 1.21142 0.99281 1.00090 0.90135 1.20774 0.97348 0.96374 0.94182 1.20615 0.99509 1.00194 0.92553 1.20962 0.97810 0.96369 0.99307 1.20958 1.00382 0.97902 0.95227 1.20618 0.99054 0.99863 0.93305 1.20692 0.96315 0.95671 0.96280 1.21204 1.01106 0.98577 0.90114 0.96284 0.91551 0.92979 0.95355 0.93774 0.92831 0.82771 0.92788 0.94266 0.89886 0.93949 0.95119 0.88934 0.90455 0.86480 0.86329 0.86325 0.86510 0.91241 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.52 37.15 0.35 -2.27 16 2 C -0.11 -2.28 5.06 -26.73 -0.14 -2.42 16 3 C 0.19 4.21 1.10 -68.86 -0.08 4.13 16 4 H 0.01 0.15 4.31 -51.93 -0.22 -0.08 16 5 C -0.52 -13.74 7.85 -34.44 -0.27 -14.01 16 6 H 0.08 2.22 7.62 -52.49 -0.40 1.82 16 7 C 0.08 2.20 5.32 -17.82 -0.09 2.11 16 8 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 9 Si 0.86 20.80 25.78 -169.99 -4.38 16.42 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.25 -5.82 5.51 56.52 0.31 -5.51 16 13 N -0.66 -12.87 5.18 -92.83 -0.48 -13.35 16 14 C 0.12 2.11 0.56 -130.19 -0.07 2.03 16 15 C 0.04 0.76 4.53 37.16 0.17 0.93 16 16 O -0.38 -6.72 9.62 -35.23 -0.34 -7.06 16 17 C 0.04 0.56 11.01 101.05 1.11 1.68 16 18 C -0.07 -1.04 6.02 -26.70 -0.16 -1.20 16 19 C -0.09 -1.23 6.15 -104.05 -0.64 -1.87 16 20 C -0.11 -1.37 10.04 -39.53 -0.40 -1.76 16 21 C -0.13 -1.41 10.05 -39.62 -0.40 -1.81 16 22 C -0.13 -1.43 10.05 -39.62 -0.40 -1.83 16 23 C -0.11 -1.41 10.04 -39.53 -0.40 -1.81 16 24 C -0.09 -1.30 6.14 -104.21 -0.64 -1.94 16 25 C -0.07 -1.17 4.77 -26.85 -0.13 -1.30 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 1.55 7.18 -51.93 -0.37 1.18 16 28 H 0.05 1.02 7.66 -51.93 -0.40 0.63 16 29 H 0.03 0.55 6.10 -51.93 -0.32 0.24 16 30 H 0.04 1.01 4.96 -51.92 -0.26 0.75 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 32 H 0.35 7.36 7.24 -39.29 -0.28 7.07 16 33 H 0.05 1.02 6.69 -51.93 -0.35 0.67 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 39 H 0.08 1.14 7.62 -51.93 -0.40 0.74 16 40 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.07 1.11 7.79 -51.93 -0.40 0.71 16 45 H 0.10 1.73 6.03 -51.93 -0.31 1.42 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -28.71 344.95 -8.56 -37.28 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.16 Total: 8.41 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -2.17 Total: -21.32 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.29 Total: -38.93 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.34 Total: -7.06 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.38 Total: 16.42 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.71 -8.56 -37.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.488 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds