Wall clock time and date at job start Tue Mar 31 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47330 * 2 1 4 4 H 1.08996 * 109.47261 * 183.02317 * 3 2 1 5 5 C 1.50698 * 109.47088 * 63.01642 * 3 2 1 6 6 H 1.07995 * 119.99783 * 243.62823 * 5 3 2 7 7 C 1.37875 * 119.99938 * 63.63014 * 5 3 2 8 8 N 1.31508 * 119.99747 * 196.72042 * 7 5 3 9 9 Si 1.86795 * 120.00011 * 16.72858 * 7 5 3 10 10 H 1.48504 * 109.47427 * 94.71195 * 9 7 5 11 11 H 1.48502 * 109.47364 * 214.71528 * 9 7 5 12 12 H 1.48503 * 109.47397 * 334.71272 * 9 7 5 13 13 N 1.46906 * 109.46732 * 303.01553 * 3 2 1 14 14 C 1.46891 * 111.00242 * 252.68904 * 13 3 2 15 15 C 1.53008 * 110.72660 * 294.33231 * 14 13 3 16 16 O 1.42899 * 109.46984 * 304.89201 * 15 14 13 17 17 C 1.42897 * 114.00107 * 175.35848 * 16 15 14 18 18 C 1.54344 * 110.82400 * 170.92853 * 14 13 3 19 19 C 1.51672 * 105.02070 * 215.56694 * 18 14 13 20 20 C 1.38504 * 130.30889 * 197.10041 * 19 18 14 21 21 C 1.38104 * 120.21659 * 179.79966 * 20 19 18 22 22 C 1.38259 * 119.93135 * 0.02562 * 21 20 19 23 23 C 1.38108 * 119.93574 * 359.97438 * 22 21 20 24 24 C 1.38219 * 109.84020 * 16.91458 * 19 18 14 25 25 C 1.51371 * 109.75658 * 0.16386 * 24 19 18 26 26 H 1.09005 * 109.47162 * 184.00501 * 1 2 3 27 27 H 1.08993 * 109.47311 * 304.00538 * 1 2 3 28 28 H 1.09001 * 109.47123 * 64.00735 * 1 2 3 29 29 H 1.08994 * 109.47441 * 239.99433 * 2 1 3 30 30 H 1.09008 * 109.46973 * 119.99365 * 2 1 3 31 31 H 0.97006 * 119.99845 * 180.02562 * 8 7 5 32 32 H 1.00900 * 110.99656 * 128.72789 * 13 3 2 33 33 H 1.08993 * 109.47216 * 64.89317 * 15 14 13 34 34 H 1.08999 * 109.47051 * 184.89557 * 15 14 13 35 35 H 1.08999 * 109.47544 * 184.69000 * 17 16 15 36 36 H 1.09004 * 109.47058 * 304.69343 * 17 16 15 37 37 H 1.09001 * 109.46917 * 64.68724 * 17 16 15 38 38 H 1.08998 * 110.30262 * 334.34676 * 18 14 13 39 39 H 1.09000 * 110.30255 * 96.49827 * 18 14 13 40 40 H 1.08003 * 119.89312 * 359.80086 * 20 19 18 41 41 H 1.07995 * 120.03716 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.03226 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.89254 * 179.97438 * 23 22 21 44 44 H 1.09001 * 110.29575 * 223.88860 * 25 24 19 45 45 H 1.09001 * 110.38603 * 101.77695 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1286 1.4430 -0.0542 5 6 1.5997 2.1310 1.2661 6 1 0.9277 2.9750 1.2162 7 6 2.0547 1.6835 2.4882 8 7 1.4395 2.0470 3.5922 9 14 3.5453 0.5610 2.5759 10 1 4.7648 1.3750 2.8115 11 1 3.3723 -0.4055 3.6900 12 1 3.6838 -0.1789 1.2958 13 7 1.4917 2.1557 -1.1614 14 6 2.5283 2.3833 -2.1769 15 6 3.6036 3.3353 -1.6492 16 8 2.9904 4.5471 -1.2048 17 6 3.8971 5.4676 -0.5944 18 6 1.9081 2.9256 -3.4821 19 6 2.7300 2.3047 -4.5955 20 6 2.8430 2.6583 -5.9298 21 6 3.6683 1.9392 -6.7719 22 6 4.3841 0.8624 -6.2823 23 6 4.2727 0.5084 -4.9520 24 6 3.4460 1.2286 -4.1059 25 6 3.1536 1.0475 -2.6318 26 1 -0.3634 -1.0252 0.0718 27 1 -0.3633 0.5747 0.8518 28 1 -0.3633 0.4504 -0.9237 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7598 1.7324 4.4521 32 1 1.0619 3.0248 -0.8821 33 1 4.1270 2.8663 -0.8162 34 1 4.3139 3.5584 -2.4453 35 1 3.3423 6.3236 -0.2104 36 1 4.4179 4.9743 0.2263 37 1 4.6228 5.8068 -1.3335 38 1 0.8666 2.6147 -3.5636 39 1 1.9827 4.0126 -3.5132 40 1 2.2838 3.4990 -6.3131 41 1 3.7539 2.2171 -7.8119 42 1 5.0297 0.2987 -6.9394 43 1 4.8319 -0.3331 -4.5703 44 1 4.0763 0.8558 -2.0840 45 1 2.4487 0.2296 -2.4822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:02 Heat of formation + Delta-G solvation = -34.781807 kcal Electronic energy + Delta-G solvation = -24300.854491 eV Core-core repulsion = 21089.334852 eV Total energy + Delta-G solvation = -3211.519640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.46423 -39.23849 -37.82759 -36.12219 -33.95220 -32.48557 -32.26051 -29.74411 -28.39763 -28.28150 -27.49186 -26.02589 -24.88702 -22.80700 -21.86445 -21.46486 -20.02141 -18.71630 -17.42443 -17.22498 -16.99072 -16.91874 -16.67721 -15.96312 -15.69363 -15.15829 -15.13979 -14.84483 -14.62073 -14.31228 -14.02791 -13.85745 -13.74053 -13.65507 -13.32969 -13.09853 -12.94311 -12.60477 -12.40351 -12.30514 -12.14924 -12.06497 -11.98363 -11.67407 -11.61220 -11.59190 -11.09745 -11.03302 -10.60460 -10.44371 -9.65301 -9.36255 -9.05183 -8.27423 -6.21616 0.50512 0.53832 1.29010 1.34514 1.42746 2.35120 2.74031 2.91622 3.07498 3.44567 3.51301 3.79606 4.01089 4.10398 4.21528 4.26666 4.30204 4.36934 4.45728 4.48933 4.55085 4.58124 4.67941 4.70061 4.73799 4.80136 4.80357 4.90844 4.94677 4.99536 5.00579 5.20968 5.25074 5.28212 5.34514 5.46029 5.55106 5.60497 5.66418 5.75131 5.82823 5.85113 6.11085 6.17543 6.22355 6.54753 6.74365 6.95154 7.40745 8.89366 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.005497 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.271516 B = 5092.831192 C = 5610.518744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.108 4.108 3 C 0.199 3.801 4 H 0.004 0.996 5 C -0.510 4.510 6 H 0.036 0.964 7 C 0.027 3.973 8 N -0.938 5.938 9 Si 0.911 3.089 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.230 1.230 13 N -0.655 5.655 14 C 0.119 3.881 15 C 0.050 3.950 16 O -0.398 6.398 17 C 0.033 3.967 18 C -0.059 4.059 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.107 4.107 25 C -0.068 4.068 26 H 0.041 0.959 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.031 0.969 31 H 0.262 0.738 32 H 0.341 0.659 33 H 0.033 0.967 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.028 0.972 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.133 0.867 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.129 0.871 44 H 0.065 0.935 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.378 -0.394 -19.650 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.146 4.146 3 C 0.090 3.910 4 H 0.021 0.979 5 C -0.548 4.548 6 H 0.054 0.946 7 C -0.171 4.171 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.153 1.153 13 N -0.285 5.285 14 C 0.027 3.973 15 C -0.028 4.028 16 O -0.317 6.317 17 C -0.063 4.063 18 C -0.097 4.097 19 C -0.102 4.102 20 C -0.134 4.134 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.108 4.108 25 C -0.106 4.106 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.160 0.840 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.151 0.849 41 H 0.167 0.833 42 H 0.166 0.834 43 H 0.147 0.853 44 H 0.084 0.916 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.920 -0.949 -19.773 20.971 hybrid contribution 1.331 0.444 1.684 2.192 sum 8.250 -0.505 -18.090 19.889 Atomic orbital electron populations 1.21359 0.95659 0.99110 1.01315 1.21832 0.97207 0.97135 0.98453 1.19276 0.92472 0.91727 0.87561 0.97858 1.21381 1.27820 1.14754 0.90879 0.94606 1.25559 0.98824 0.97400 0.95351 1.70126 1.40493 1.48408 0.98755 0.86393 0.80803 0.79777 0.79406 1.20954 1.21399 1.15283 1.60771 1.28630 1.26614 1.12458 1.21579 0.90351 0.92753 0.92645 1.23074 0.96271 0.86041 0.97425 1.87779 1.36434 1.28628 1.78860 1.22808 0.94161 0.92824 0.96557 1.20972 0.99100 0.99991 0.89605 1.20733 0.97886 0.96778 0.94835 1.20885 0.99839 1.00868 0.91859 1.21366 0.96478 0.95592 1.00585 1.21346 1.00127 0.97823 0.94879 1.20866 0.98761 1.00094 0.93917 1.20609 0.97923 0.96825 0.95410 1.21079 1.00461 0.97337 0.91679 0.93965 0.95106 0.92141 0.92787 0.95000 0.92909 0.83984 0.94915 0.92648 0.88813 0.95284 0.92443 0.89472 0.90527 0.84863 0.83306 0.83426 0.85264 0.91630 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 9.52 71.98 0.68 -4.12 16 2 C -0.11 -4.56 5.06 30.59 0.15 -4.40 16 3 C 0.20 8.93 1.10 44.17 0.05 8.98 16 4 H 0.00 0.17 4.31 -2.39 -0.01 0.16 16 5 C -0.51 -27.96 7.85 25.60 0.20 -27.76 16 6 H 0.04 2.21 7.62 -2.91 -0.02 2.19 16 7 C 0.03 1.53 5.32 84.66 0.45 1.98 16 8 N -0.94 -57.69 13.96 21.45 0.30 -57.40 16 9 Si 0.91 43.28 25.78 68.60 1.77 45.05 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.23 -9.94 5.51 99.48 0.55 -9.39 16 13 N -0.65 -25.89 5.18 -447.62 -2.32 -28.21 16 14 C 0.12 3.97 0.56 4.44 0.00 3.97 16 15 C 0.05 1.72 4.53 71.98 0.33 2.05 16 16 O -0.40 -14.28 9.62 -148.98 -1.43 -15.72 16 17 C 0.03 0.97 11.01 113.37 1.25 2.22 16 18 C -0.06 -1.73 6.02 30.61 0.18 -1.55 16 19 C -0.10 -2.70 6.15 -19.50 -0.12 -2.82 16 20 C -0.12 -2.52 10.04 22.30 0.22 -2.30 16 21 C -0.12 -2.21 10.05 22.24 0.22 -1.99 16 22 C -0.12 -2.29 10.05 22.24 0.22 -2.06 16 23 C -0.12 -2.67 10.04 22.30 0.22 -2.45 16 24 C -0.11 -2.91 6.14 -19.59 -0.12 -3.03 16 25 C -0.07 -2.11 4.77 30.52 0.15 -1.97 16 26 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.03 1.45 7.18 -2.39 -0.02 1.44 16 28 H 0.06 2.35 7.66 -2.39 -0.02 2.33 16 29 H 0.05 2.01 6.10 -2.39 -0.01 2.00 16 30 H 0.03 1.41 4.96 -2.38 -0.01 1.40 16 31 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 32 H 0.34 14.80 7.24 -89.69 -0.65 14.15 16 33 H 0.03 1.24 6.69 -2.39 -0.02 1.23 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.03 0.92 8.12 -2.38 -0.02 0.90 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 2.59 8.08 -2.39 -0.02 2.57 16 39 H 0.08 2.20 7.62 -2.39 -0.02 2.19 16 40 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 41 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.13 2.51 8.06 -2.91 -0.02 2.48 16 44 H 0.07 2.03 7.79 -2.39 -0.02 2.01 16 45 H 0.09 2.98 6.03 -2.39 -0.01 2.96 16 Total: -1.00 -63.62 344.95 2.59 -61.04 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.17 Total: 30.49 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 4.10 Total: -35.25 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -2.02 Total: -85.61 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -1.43 Total: -15.72 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.77 Total: 45.05 kcal Total: -63.62 2.59 -61.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.255 kcal (2) G-P(sol) polarization free energy of solvation -63.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds