Wall clock time and date at job start Tue Mar 31 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47365 * 2 1 4 4 H 1.09007 * 109.46647 * 305.00154 * 3 2 1 5 5 C 1.50696 * 109.47349 * 184.99772 * 3 2 1 6 6 H 1.08004 * 120.00375 * 239.99701 * 5 3 2 7 7 C 1.37883 * 119.99687 * 60.00314 * 5 3 2 8 8 N 1.31513 * 120.00066 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99711 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47164 * 59.99678 * 9 7 5 11 11 H 1.48501 * 109.47358 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47434 * 299.99583 * 9 7 5 13 13 N 1.46901 * 109.47146 * 64.99944 * 3 2 1 14 14 C 1.48558 * 111.00303 * 64.46389 * 13 3 2 15 15 C 1.54372 * 104.59769 * 159.03942 * 14 13 3 16 16 C 1.54267 * 105.06165 * 336.15442 * 15 14 13 17 17 H 1.08995 * 110.32998 * 118.89409 * 16 15 14 18 18 O 1.42900 * 110.31796 * 241.00260 * 16 15 14 19 19 C 1.48560 * 111.00121 * 179.88618 * 13 3 2 20 20 H 1.08995 * 110.41028 * 319.73890 * 19 13 3 21 21 C 1.53005 * 110.51105 * 82.12962 * 19 13 3 22 22 C 1.50703 * 109.46899 * 180.43572 * 21 19 13 23 23 C 1.38236 * 119.99440 * 263.74767 * 22 21 19 24 24 C 1.38240 * 119.99805 * 179.81083 * 23 22 21 25 25 C 1.38234 * 119.99652 * 0.41899 * 24 23 22 26 26 C 1.38231 * 120.00149 * 359.80843 * 25 24 23 27 27 C 1.38228 * 120.00300 * 84.01826 * 22 21 19 28 28 H 1.08999 * 109.47130 * 60.00086 * 1 2 3 29 29 H 1.09004 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47272 * 299.99705 * 1 2 3 31 31 H 1.08997 * 109.47588 * 239.99864 * 2 1 3 32 32 H 1.08999 * 109.47130 * 119.99914 * 2 1 3 33 33 H 0.97006 * 119.99622 * 180.02562 * 8 7 5 34 34 H 1.08999 * 110.40847 * 40.26038 * 14 13 3 35 35 H 1.08994 * 110.41015 * 277.82362 * 14 13 3 36 36 H 1.09008 * 110.32265 * 95.04476 * 15 14 13 37 37 H 1.08993 * 110.32745 * 217.25403 * 15 14 13 38 38 H 0.96696 * 113.99727 * 298.53819 * 18 16 15 39 39 H 1.08997 * 109.47150 * 300.42835 * 21 19 13 40 40 H 1.08997 * 109.47065 * 60.43502 * 21 19 13 41 41 H 1.07998 * 120.00732 * 359.97438 * 23 22 21 42 42 H 1.07993 * 120.00323 * 180.21009 * 24 23 22 43 43 H 1.08005 * 119.99919 * 179.79147 * 25 24 23 44 44 H 1.08002 * 119.99918 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.99822 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8812 -1.3818 10 1 6.5975 0.1473 -0.2348 11 1 6.3979 0.2167 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6514 2.0993 1.2552 14 6 2.3125 1.4559 2.4197 15 6 2.2645 2.5238 3.5334 16 6 2.1463 3.8714 2.7918 17 1 1.2194 4.3748 3.0665 18 8 3.2693 4.7028 3.0913 19 6 2.1331 3.5042 1.2923 20 1 3.1377 3.5727 0.8752 21 6 1.1752 4.4197 0.5272 22 6 1.6910 5.8350 0.5707 23 6 1.2105 6.7167 1.5207 24 6 1.6864 8.0140 1.5632 25 6 2.6364 8.4318 0.6500 26 6 3.1133 7.5514 -0.3030 27 6 2.6403 6.2531 -0.3430 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8294 -0.0618 -2.9495 34 1 3.3453 1.2039 2.1790 35 1 1.7638 0.5646 2.7237 36 1 1.3954 2.3658 4.1722 37 1 3.1798 2.4960 4.1244 38 1 3.3527 4.9287 4.0278 39 1 1.1072 4.0895 -0.5093 40 1 0.1879 4.3784 0.9873 41 1 0.4653 6.3915 2.2316 42 1 1.3136 8.7019 2.3075 43 1 3.0057 9.4462 0.6810 44 1 3.8552 7.8780 -1.0167 45 1 3.0127 5.5653 -1.0877 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255170714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:33 Heat of formation + Delta-G solvation = -27.789036 kcal Electronic energy + Delta-G solvation = -24350.701612 eV Core-core repulsion = 21139.485202 eV Total energy + Delta-G solvation = -3211.216411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.48805 -38.34822 -35.92223 -33.63893 -32.67730 -31.47669 -30.57331 -29.43290 -28.29018 -25.93918 -24.73136 -23.05422 -22.28713 -21.24607 -21.09047 -19.38093 -19.01476 -16.71588 -16.51421 -16.18308 -15.32869 -14.92459 -14.82323 -14.60475 -14.22486 -13.71776 -13.17261 -13.05525 -12.92606 -12.81216 -12.59455 -12.20135 -12.16336 -11.93262 -11.48965 -11.37008 -11.19090 -10.91210 -10.85024 -10.67711 -10.55421 -10.50761 -10.47998 -9.92793 -9.88495 -9.71150 -9.50645 -9.42111 -9.09090 -8.59071 -8.37236 -8.28242 -7.28805 -6.00482 -4.12508 1.70747 1.73261 3.28471 3.33321 3.37252 4.11076 4.39571 4.55162 5.00997 5.13353 5.19805 5.23228 5.26065 5.31954 5.37070 5.51921 5.61791 5.77974 5.86423 5.89969 6.02995 6.08272 6.21191 6.29799 6.32808 6.39598 6.43971 6.46619 6.57223 6.64538 6.67063 6.76204 6.81466 6.82664 6.88157 7.03946 7.10207 7.15710 7.27465 7.35393 7.56475 7.72719 7.91456 8.03397 8.11926 8.19332 8.41501 8.96428 9.54347 10.99379 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.006172 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.181039 B = 4535.612097 C = 5278.666054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.205 3.795 4 H 0.041 0.959 5 C -0.544 4.544 6 H 0.059 0.941 7 C 0.071 3.929 8 N -0.884 5.884 9 Si 0.884 3.116 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.503 5.503 14 C 0.039 3.961 15 C -0.160 4.160 16 C 0.105 3.895 17 H 0.054 0.946 18 O -0.558 6.558 19 C 0.082 3.918 20 H 0.080 0.920 21 C -0.065 4.065 22 C -0.056 4.056 23 C -0.112 4.112 24 C -0.123 4.123 25 C -0.134 4.134 26 C -0.120 4.120 27 C -0.109 4.109 28 H 0.039 0.961 29 H 0.025 0.975 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.365 0.635 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.067 9.904 8.199 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.099 3.901 4 H 0.059 0.941 5 C -0.582 4.582 6 H 0.077 0.923 7 C -0.132 4.132 8 N -0.522 5.522 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.228 5.228 14 C -0.089 4.089 15 C -0.198 4.198 16 C 0.045 3.955 17 H 0.071 0.929 18 O -0.361 6.361 19 C -0.027 4.027 20 H 0.098 0.902 21 C -0.103 4.103 22 C -0.057 4.057 23 C -0.130 4.130 24 C -0.141 4.141 25 C -0.152 4.152 26 C -0.138 4.138 27 C -0.127 4.127 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.211 0.789 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.556 9.695 7.373 13.005 hybrid contribution 1.951 -0.053 0.419 1.996 sum -2.606 9.642 7.793 12.668 Atomic orbital electron populations 1.21717 0.98853 0.98446 1.00579 1.21570 0.92227 0.99055 1.02012 1.19392 0.93210 0.91263 0.86282 0.94134 1.21668 0.92741 1.38247 1.05588 0.92329 1.24873 0.97695 0.94968 0.95655 1.69862 1.34852 1.38121 1.09413 0.86778 0.86346 0.78342 0.77316 1.20365 1.21255 1.20246 1.65677 1.52267 1.00132 1.04731 1.22899 0.99697 0.95975 0.90338 1.23091 1.01082 0.96937 0.98683 1.22618 0.87660 0.89040 0.96165 0.92852 1.86624 1.49130 1.70851 1.29520 1.22337 0.98843 0.90027 0.91467 0.90205 1.20501 0.98282 0.89624 1.01910 1.19901 0.95699 0.95597 0.94506 1.20928 1.00332 0.93461 0.98286 1.20986 0.98024 0.96074 0.99063 1.20989 0.98484 0.99246 0.96488 1.21076 0.99919 0.93990 0.98815 1.21145 0.96637 0.95816 0.99146 0.94169 0.95606 0.93420 0.88913 0.95038 0.92835 0.91906 0.91605 0.91873 0.91618 0.78917 0.90324 0.91289 0.86893 0.86907 0.86937 0.86662 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.80 37.16 0.36 -2.40 16 2 C -0.11 -2.55 5.18 -26.73 -0.14 -2.69 16 3 C 0.21 4.88 1.75 -68.87 -0.12 4.76 16 4 H 0.04 1.07 7.37 -51.93 -0.38 0.69 16 5 C -0.54 -14.19 6.50 -34.44 -0.22 -14.41 16 6 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 7 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 8 N -0.88 -24.42 11.29 55.43 0.63 -23.79 16 9 Si 0.88 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.50 -10.26 4.54 -215.62 -0.98 -11.24 16 14 C 0.04 0.75 5.30 -2.19 -0.01 0.74 16 15 C -0.16 -2.50 6.80 -25.35 -0.17 -2.67 16 16 C 0.10 1.69 3.20 -25.35 -0.08 1.61 16 17 H 0.05 0.80 7.23 -51.93 -0.38 0.42 16 18 O -0.56 -8.90 13.19 -35.23 -0.46 -9.36 16 19 C 0.08 1.58 1.86 -66.07 -0.12 1.45 16 20 H 0.08 1.85 6.17 -51.93 -0.32 1.53 16 21 C -0.07 -1.14 4.98 -27.88 -0.14 -1.28 16 22 C -0.06 -0.92 4.68 -104.62 -0.49 -1.41 16 23 C -0.11 -1.60 9.02 -39.58 -0.36 -1.95 16 24 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 25 C -0.13 -1.76 10.05 -39.59 -0.40 -2.16 16 26 C -0.12 -1.74 10.05 -39.59 -0.40 -2.14 16 27 C -0.11 -1.81 9.73 -39.59 -0.39 -2.20 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 31 H 0.09 2.41 5.95 -51.93 -0.31 2.11 16 32 H 0.03 0.72 6.83 -51.93 -0.35 0.36 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.06 1.37 5.90 -51.93 -0.31 1.06 16 35 H 0.07 1.22 7.57 -51.93 -0.39 0.83 16 36 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 37 H 0.07 0.97 7.98 -51.93 -0.41 0.55 16 38 H 0.37 4.12 9.11 45.56 0.41 4.53 16 39 H 0.08 1.49 7.38 -51.93 -0.38 1.11 16 40 H 0.07 1.12 7.98 -51.93 -0.41 0.70 16 41 H 0.11 1.43 7.76 -52.49 -0.41 1.03 16 42 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 44 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 349.74 15.07 5.27 5.27 Total: -1.00 -28.24 349.74 -10.17 -38.41 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.44 Total: 9.56 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -3.16 Total: -24.95 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.35 Total: -35.03 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.46 Total: -9.36 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.24 -10.17 -38.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.622 kcal (2) G-P(sol) polarization free energy of solvation -28.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds