Wall clock time and date at job start Tue Mar 31 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47365 * 2 1 4 4 H 1.09007 * 109.46647 * 305.00154 * 3 2 1 5 5 C 1.50696 * 109.47349 * 184.99772 * 3 2 1 6 6 H 1.08004 * 120.00375 * 239.99701 * 5 3 2 7 7 C 1.37883 * 119.99687 * 60.00314 * 5 3 2 8 8 N 1.31513 * 120.00066 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99711 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47164 * 59.99678 * 9 7 5 11 11 H 1.48501 * 109.47358 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47434 * 299.99583 * 9 7 5 13 13 N 1.46901 * 109.47146 * 64.99944 * 3 2 1 14 14 C 1.48558 * 111.00303 * 64.46389 * 13 3 2 15 15 C 1.54372 * 104.59769 * 159.03942 * 14 13 3 16 16 C 1.54267 * 105.06165 * 336.15442 * 15 14 13 17 17 H 1.08995 * 110.32998 * 118.89409 * 16 15 14 18 18 O 1.42900 * 110.31796 * 241.00260 * 16 15 14 19 19 C 1.48560 * 111.00121 * 179.88618 * 13 3 2 20 20 H 1.08995 * 110.41028 * 319.73890 * 19 13 3 21 21 C 1.53005 * 110.51105 * 82.12962 * 19 13 3 22 22 C 1.50703 * 109.46899 * 180.43572 * 21 19 13 23 23 C 1.38236 * 119.99440 * 263.74767 * 22 21 19 24 24 C 1.38240 * 119.99805 * 179.81083 * 23 22 21 25 25 C 1.38234 * 119.99652 * 0.41899 * 24 23 22 26 26 C 1.38231 * 120.00149 * 359.80843 * 25 24 23 27 27 C 1.38228 * 120.00300 * 84.01826 * 22 21 19 28 28 H 1.08999 * 109.47130 * 60.00086 * 1 2 3 29 29 H 1.09004 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47272 * 299.99705 * 1 2 3 31 31 H 1.08997 * 109.47588 * 239.99864 * 2 1 3 32 32 H 1.08999 * 109.47130 * 119.99914 * 2 1 3 33 33 H 0.97006 * 119.99622 * 180.02562 * 8 7 5 34 34 H 1.08999 * 110.40847 * 40.26038 * 14 13 3 35 35 H 1.08994 * 110.41015 * 277.82362 * 14 13 3 36 36 H 1.09008 * 110.32265 * 95.04476 * 15 14 13 37 37 H 1.08993 * 110.32745 * 217.25403 * 15 14 13 38 38 H 0.96696 * 113.99727 * 298.53819 * 18 16 15 39 39 H 1.08997 * 109.47150 * 300.42835 * 21 19 13 40 40 H 1.08997 * 109.47065 * 60.43502 * 21 19 13 41 41 H 1.07998 * 120.00732 * 359.97438 * 23 22 21 42 42 H 1.07993 * 120.00323 * 180.21009 * 24 23 22 43 43 H 1.08005 * 119.99919 * 179.79147 * 25 24 23 44 44 H 1.08002 * 119.99918 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.99822 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8812 -1.3818 10 1 6.5975 0.1473 -0.2348 11 1 6.3979 0.2167 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6514 2.0993 1.2552 14 6 2.3125 1.4559 2.4197 15 6 2.2645 2.5238 3.5334 16 6 2.1463 3.8714 2.7918 17 1 1.2194 4.3748 3.0665 18 8 3.2693 4.7028 3.0913 19 6 2.1331 3.5042 1.2923 20 1 3.1377 3.5727 0.8752 21 6 1.1752 4.4197 0.5272 22 6 1.6910 5.8350 0.5707 23 6 1.2105 6.7167 1.5207 24 6 1.6864 8.0140 1.5632 25 6 2.6364 8.4318 0.6500 26 6 3.1133 7.5514 -0.3030 27 6 2.6403 6.2531 -0.3430 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8294 -0.0618 -2.9495 34 1 3.3453 1.2039 2.1790 35 1 1.7638 0.5646 2.7237 36 1 1.3954 2.3658 4.1722 37 1 3.1798 2.4960 4.1244 38 1 3.3527 4.9287 4.0278 39 1 1.1072 4.0895 -0.5093 40 1 0.1879 4.3784 0.9873 41 1 0.4653 6.3915 2.2316 42 1 1.3136 8.7019 2.3075 43 1 3.0057 9.4462 0.6810 44 1 3.8552 7.8780 -1.0167 45 1 3.0127 5.5653 -1.0877 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255170714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:33 Heat of formation + Delta-G solvation = -45.319050 kcal Electronic energy + Delta-G solvation = -24351.461771 eV Core-core repulsion = 21139.485202 eV Total energy + Delta-G solvation = -3211.976569 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87137 -39.62198 -37.41980 -35.28734 -34.09495 -33.33756 -31.68305 -30.93900 -29.69313 -27.83675 -26.07908 -24.89265 -23.41682 -22.82541 -22.28933 -20.84483 -20.78178 -18.37086 -17.98492 -17.46999 -17.04626 -16.19861 -16.17212 -16.06754 -15.79200 -15.20548 -14.85230 -14.52930 -14.33030 -14.10966 -14.07252 -13.68462 -13.49058 -13.38712 -13.16744 -12.99420 -12.85380 -12.66961 -12.44998 -12.23175 -12.09177 -11.88453 -11.75917 -11.73789 -11.60777 -11.43885 -11.15755 -10.93873 -10.72360 -10.43279 -9.70864 -9.46713 -9.08743 -8.07008 -6.26061 0.57593 0.61133 1.32501 1.33860 1.40865 2.36684 2.95332 3.12136 3.24553 3.64093 3.84553 3.95739 4.06967 4.18571 4.21746 4.27994 4.36010 4.48002 4.56619 4.58251 4.68763 4.73615 4.75533 4.83816 4.88495 4.91296 5.01215 5.09858 5.15016 5.20660 5.22448 5.29371 5.32820 5.34843 5.43895 5.48034 5.61260 5.67179 5.70297 5.77244 5.87977 6.02987 6.15955 6.24687 6.33664 6.46935 6.92962 7.05389 7.42738 8.89259 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.006172 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.181039 B = 4535.612097 C = 5278.666054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.004 0.996 5 C -0.546 4.546 6 H 0.045 0.955 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.937 3.063 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.280 1.280 13 N -0.497 5.497 14 C 0.035 3.965 15 C -0.148 4.148 16 C 0.116 3.884 17 H 0.080 0.920 18 O -0.575 6.575 19 C 0.081 3.919 20 H 0.031 0.969 21 C -0.057 4.057 22 C -0.073 4.073 23 C -0.112 4.112 24 C -0.117 4.117 25 C -0.131 4.131 26 C -0.129 4.129 27 C -0.141 4.141 28 H 0.032 0.968 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.388 0.612 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.135 0.865 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.128 0.872 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.906 11.797 11.017 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.022 0.978 5 C -0.585 4.585 6 H 0.063 0.937 7 C -0.175 4.175 8 N -0.547 5.547 9 Si 0.764 3.236 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.206 1.206 13 N -0.221 5.221 14 C -0.094 4.094 15 C -0.186 4.186 16 C 0.057 3.943 17 H 0.097 0.903 18 O -0.382 6.382 19 C -0.028 4.028 20 H 0.049 0.951 21 C -0.094 4.094 22 C -0.074 4.074 23 C -0.130 4.130 24 C -0.135 4.135 25 C -0.149 4.149 26 C -0.147 4.147 27 C -0.159 4.159 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.237 0.763 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.152 0.848 42 H 0.167 0.833 43 H 0.162 0.838 44 H 0.146 0.854 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.391 11.592 10.216 16.365 hybrid contribution 2.237 -0.565 -0.445 2.349 sum -3.154 11.028 9.771 15.068 Atomic orbital electron populations 1.21572 0.96089 0.99886 1.00769 1.21413 0.94651 0.97963 1.00356 1.19098 0.91597 0.91601 0.86970 0.97777 1.21867 0.94148 1.37368 1.05098 0.93651 1.25512 1.01266 0.95094 0.95639 1.69979 1.36064 1.38931 1.09751 0.85941 0.82207 0.77988 0.77512 1.19891 1.20528 1.20616 1.65615 1.51944 1.00879 1.03639 1.22936 0.97567 0.97705 0.91160 1.23063 1.03158 0.94846 0.97572 1.22446 0.88815 0.89739 0.93342 0.90264 1.86584 1.49064 1.70695 1.31830 1.22302 0.96564 0.89634 0.94320 0.95140 1.20367 0.98777 0.90485 0.99818 1.19826 0.96508 0.95203 0.95821 1.21151 1.00431 0.93684 0.97727 1.21420 0.96994 0.95922 0.99177 1.21392 0.97850 1.00272 0.95364 1.21288 1.00281 0.93290 0.99829 1.21121 0.98277 0.96802 0.99702 0.94916 0.93504 0.92186 0.92017 0.95091 0.92931 0.95325 0.90823 0.88808 0.90397 0.76251 0.93666 0.89551 0.84754 0.83306 0.83768 0.85428 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 9.80 71.98 0.71 -4.29 16 2 C -0.11 -5.03 5.18 30.59 0.16 -4.87 16 3 C 0.22 10.78 1.75 44.17 0.08 10.85 16 4 H 0.00 0.25 7.37 -2.38 -0.02 0.23 16 5 C -0.55 -30.11 6.50 25.60 0.17 -29.95 16 6 H 0.05 2.58 5.68 -2.91 -0.02 2.57 16 7 C 0.02 1.40 5.29 84.66 0.45 1.84 16 8 N -0.91 -52.50 11.29 21.45 0.24 -52.26 16 9 Si 0.94 44.96 29.54 68.60 2.03 46.99 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 13 N -0.50 -20.66 4.54 -836.10 -3.80 -24.46 16 14 C 0.03 1.32 5.30 86.45 0.46 1.78 16 15 C -0.15 -4.26 6.80 31.49 0.21 -4.04 16 16 C 0.12 3.51 3.20 31.49 0.10 3.61 16 17 H 0.08 2.04 7.23 -2.39 -0.02 2.02 16 18 O -0.57 -17.14 13.19 -148.98 -1.96 -19.10 16 19 C 0.08 3.18 1.86 45.06 0.08 3.26 16 20 H 0.03 1.51 6.17 -2.39 -0.01 1.49 16 21 C -0.06 -2.04 4.98 29.85 0.15 -1.89 16 22 C -0.07 -2.39 4.68 -19.87 -0.09 -2.48 16 23 C -0.11 -2.89 9.02 22.27 0.20 -2.69 16 24 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 25 C -0.13 -3.05 10.05 22.27 0.22 -2.82 16 26 C -0.13 -3.68 10.05 22.27 0.22 -3.46 16 27 C -0.14 -4.90 9.73 22.27 0.22 -4.69 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 31 H 0.06 3.35 5.95 -2.39 -0.01 3.33 16 32 H 0.03 1.44 6.83 -2.39 -0.02 1.42 16 33 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 34 H 0.03 1.28 5.90 -2.39 -0.01 1.27 16 35 H 0.07 2.65 7.57 -2.39 -0.02 2.63 16 36 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.08 2.07 7.98 -2.39 -0.02 2.05 16 38 H 0.39 7.41 9.11 -74.06 -0.67 6.74 16 39 H 0.04 1.88 7.38 -2.39 -0.02 1.86 16 40 H 0.09 2.73 7.98 -2.39 -0.02 2.72 16 41 H 0.13 2.85 7.76 -2.91 -0.02 2.83 16 42 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 43 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 44 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 45 H 0.09 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -65.13 349.74 0.36 -64.76 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.30 Total: 26.27 kcal Atomic # 6 Polarization: -45.76 SS G_CDS: 3.56 Total: -42.21 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -3.55 Total: -76.72 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -1.96 Total: -19.10 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -65.13 0.36 -64.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.445 kcal (2) G-P(sol) polarization free energy of solvation -65.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds