Wall clock time and date at job start Tue Mar 31 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46959 * 2 1 4 4 H 1.08994 * 109.47245 * 181.25273 * 3 2 1 5 5 C 1.50710 * 109.47137 * 301.25469 * 3 2 1 6 6 H 1.07997 * 120.00206 * 119.99809 * 5 3 2 7 7 C 1.37873 * 119.99574 * 299.99780 * 5 3 2 8 8 N 1.31520 * 120.00488 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00009 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47019 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47067 * 119.99989 * 9 7 5 12 12 H 1.48501 * 109.47566 * 240.00188 * 9 7 5 13 13 N 1.46898 * 109.47183 * 61.24960 * 3 2 1 14 14 C 1.48538 * 111.00062 * 54.93981 * 13 3 2 15 15 C 1.54934 * 103.22783 * 159.71894 * 14 13 3 16 16 C 1.54594 * 102.92491 * 322.58526 * 15 14 13 17 17 H 1.09003 * 110.30640 * 263.04608 * 16 15 14 18 18 O 1.42898 * 110.31095 * 140.87326 * 16 15 14 19 19 C 1.35899 * 116.99607 * 88.90591 * 18 16 15 20 20 C 1.38745 * 120.05837 * 354.39157 * 19 18 16 21 21 C 1.38124 * 119.94429 * 180.02562 * 20 19 18 22 22 C 1.38291 * 120.05682 * 0.02637 * 21 20 19 23 23 C 1.38240 * 120.10940 * 359.95311 * 22 21 20 24 24 C 1.38172 * 120.05782 * 359.77173 * 23 22 21 25 25 C 1.50698 * 120.03119 * 180.25208 * 24 23 22 26 26 C 1.47901 * 111.00028 * 172.33399 * 13 3 2 27 27 H 1.09006 * 109.47124 * 185.40815 * 1 2 3 28 28 H 1.08995 * 109.47404 * 305.40555 * 1 2 3 29 29 H 1.09003 * 109.47263 * 65.40814 * 1 2 3 30 30 H 1.08992 * 109.47454 * 239.99879 * 2 1 3 31 31 H 1.08999 * 109.46944 * 119.99267 * 2 1 3 32 32 H 0.96989 * 120.00283 * 179.97438 * 8 7 5 33 33 H 1.09003 * 110.66261 * 278.15339 * 14 13 3 34 34 H 1.08998 * 110.66423 * 41.28459 * 14 13 3 35 35 H 1.08993 * 110.72288 * 204.22541 * 15 14 13 36 36 H 1.09003 * 110.87585 * 81.01471 * 15 14 13 37 37 H 1.08004 * 120.03075 * 359.97438 * 20 19 18 38 38 H 1.08000 * 119.97302 * 180.02562 * 21 20 19 39 39 H 1.07995 * 119.94168 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.97057 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.46902 * 270.27555 * 25 24 23 42 42 H 1.09003 * 109.46977 * 30.27405 * 25 24 23 43 43 H 1.08993 * 109.46991 * 150.27050 * 25 24 23 44 44 H 1.09003 * 109.91614 * 333.50692 * 26 13 3 45 45 H 1.08995 * 109.92056 * 94.80407 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0225 5 6 1.5123 2.1619 -1.2147 6 1 0.8936 3.0391 -1.0964 7 6 1.8196 1.7000 -2.4769 8 7 2.5726 0.6314 -2.6210 9 14 1.1651 2.5911 -3.9825 10 1 0.3487 3.7548 -3.5530 11 1 2.3029 3.0641 -4.8112 12 1 0.3238 1.6631 -4.7803 13 7 1.5751 2.1262 1.2142 14 6 1.9742 1.3768 2.4330 15 6 1.8914 2.4470 3.5503 16 6 2.4028 3.7239 2.8446 17 1 3.4601 3.8776 3.0603 18 8 1.6405 4.8591 3.2597 19 6 2.0767 5.5259 4.3606 20 6 3.1445 5.0308 5.0953 21 6 3.5855 5.7102 6.2141 22 6 2.9633 6.8825 6.6026 23 6 1.8994 7.3780 5.8721 24 6 1.4581 6.7052 4.7488 25 6 0.3019 7.2489 3.9497 26 6 2.1965 3.4623 1.3410 27 1 -0.3634 -1.0231 0.0969 28 1 -0.3634 0.5953 0.8376 29 1 -0.3634 0.4277 -0.9345 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 2.7884 0.3062 -3.5089 33 1 1.2775 0.5616 2.6287 34 1 2.9922 0.9994 2.3364 35 1 2.5389 2.1827 4.3862 36 1 0.8630 2.5780 3.8872 37 1 3.6300 4.1146 4.7930 38 1 4.4169 5.3255 6.7861 39 1 3.3094 7.4119 7.4780 40 1 1.4154 8.2940 6.1773 41 1 -0.6318 6.8445 4.3403 42 1 0.2871 8.3362 4.0258 43 1 0.4144 6.9594 2.9049 44 1 3.1575 3.4752 0.8267 45 1 1.5365 4.2204 0.9194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:15 Heat of formation + Delta-G solvation = -12.244499 kcal Electronic energy + Delta-G solvation = -23439.764823 eV Core-core repulsion = 20229.222474 eV Total energy + Delta-G solvation = -3210.542349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36077 -38.50992 -36.85339 -34.05895 -32.76571 -31.37601 -30.03838 -29.55714 -27.92729 -26.68497 -26.02694 -23.58611 -22.55659 -21.66674 -21.23446 -20.09806 -18.95793 -18.10649 -16.13302 -16.05250 -15.71048 -15.37911 -14.93239 -14.81546 -14.23264 -14.03682 -13.41340 -13.36686 -13.19252 -13.12319 -12.56487 -12.41668 -12.28419 -11.98430 -11.78713 -11.72577 -11.52673 -11.34053 -11.21432 -10.97781 -10.89572 -10.64048 -10.52009 -10.33188 -10.27466 -9.91881 -9.67965 -9.43699 -8.87708 -8.85783 -8.41759 -8.04962 -7.31022 -6.01118 -4.04200 1.27913 1.44035 3.29740 3.35859 3.38257 3.43280 3.72893 4.41122 4.71167 4.77358 4.80873 4.94206 5.00048 5.14431 5.22931 5.26103 5.31101 5.39802 5.51689 5.64531 5.71061 5.72901 5.83474 5.85006 6.03133 6.21730 6.22925 6.30672 6.34226 6.38786 6.44618 6.46956 6.50019 6.56857 6.60861 6.75565 6.84094 7.08518 7.19853 7.33490 7.57870 7.61962 7.69358 7.84410 8.06011 8.29731 8.52067 9.01567 9.60103 11.05593 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.003850 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.348448 B = 7270.551971 C = 7912.285952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C 0.208 3.792 4 H 0.000 1.000 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.501 5.501 14 C 0.037 3.963 15 C -0.143 4.143 16 C 0.072 3.928 17 H 0.073 0.927 18 O -0.296 6.296 19 C 0.138 3.862 20 C -0.208 4.208 21 C -0.087 4.087 22 C -0.164 4.164 23 C -0.086 4.086 24 C -0.122 4.122 25 C -0.105 4.105 26 C 0.057 3.943 27 H 0.015 0.985 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.013 0.987 32 H 0.259 0.741 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.650 8.527 16.000 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.149 4.149 3 C 0.101 3.899 4 H 0.018 0.982 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.227 5.227 14 C -0.091 4.091 15 C -0.181 4.181 16 C 0.016 3.984 17 H 0.091 0.909 18 O -0.209 6.209 19 C 0.092 3.908 20 C -0.226 4.226 21 C -0.106 4.106 22 C -0.182 4.182 23 C -0.104 4.104 24 C -0.123 4.123 25 C -0.162 4.162 26 C -0.071 4.071 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.146 0.854 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.008 8.480 15.645 17.796 hybrid contribution 0.920 0.107 -0.720 1.173 sum 0.911 8.587 14.925 17.243 Atomic orbital electron populations 1.21472 0.97176 0.97277 1.01948 1.21558 0.95368 0.97939 1.00080 1.19513 0.93054 0.91224 0.86073 0.98237 1.21064 1.30849 1.11857 0.89459 0.91958 1.24896 0.95248 0.95108 0.98889 1.69884 1.37647 1.23179 1.22637 0.86519 0.78677 0.79818 0.82919 1.19683 1.21226 1.21068 1.64933 1.54612 1.00797 1.02359 1.23099 0.98925 0.96392 0.90715 1.23044 1.02365 0.94823 0.97877 1.23573 0.94209 0.83868 0.96800 0.90934 1.86219 1.51839 1.41811 1.41003 1.18942 0.92970 0.91550 0.87334 1.21325 0.99887 1.02853 0.98585 1.20902 0.99003 0.94860 0.95793 1.20969 0.98251 0.97673 1.01305 1.20849 0.96435 0.99299 0.93831 1.19319 1.00411 0.94290 0.98249 1.20607 0.95338 0.99991 1.00264 1.22679 0.99426 0.94749 0.90248 0.96616 0.93538 0.92547 0.89042 0.96806 0.93089 0.90283 0.94556 0.91626 0.89905 0.85382 0.86167 0.86286 0.85753 0.91479 0.92005 0.90782 0.92679 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.47 37.16 0.35 -2.32 16 2 C -0.11 -2.60 5.10 -26.73 -0.14 -2.74 16 3 C 0.21 5.04 1.51 -68.86 -0.10 4.94 16 4 H 0.00 0.00 7.88 -51.93 -0.41 -0.41 16 5 C -0.49 -13.13 7.00 -34.44 -0.24 -13.37 16 6 H 0.06 1.70 7.72 -52.49 -0.41 1.29 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 8 N -0.89 -24.95 11.33 55.43 0.63 -24.33 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 N -0.50 -10.45 4.30 -223.88 -0.96 -11.41 16 14 C 0.04 0.65 5.19 -1.90 -0.01 0.64 16 15 C -0.14 -2.13 6.47 -24.87 -0.16 -2.29 16 16 C 0.07 1.13 2.84 -25.37 -0.07 1.06 16 17 H 0.07 1.04 6.26 -51.93 -0.33 0.72 16 18 O -0.30 -4.74 8.78 -19.42 -0.17 -4.91 16 19 C 0.14 1.97 6.63 -39.22 -0.26 1.71 16 20 C -0.21 -2.64 8.85 -39.44 -0.35 -2.99 16 21 C -0.09 -0.96 10.04 -39.60 -0.40 -1.35 16 22 C -0.16 -1.69 10.04 -39.56 -0.40 -2.09 16 23 C -0.09 -0.93 9.70 -39.60 -0.38 -1.32 16 24 C -0.12 -1.57 5.89 -104.47 -0.62 -2.18 16 25 C -0.11 -1.21 9.79 36.00 0.35 -0.86 16 26 C 0.06 1.10 5.85 -2.75 -0.02 1.08 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.99 7.48 -51.93 -0.39 0.60 16 29 H 0.06 1.35 7.38 -51.93 -0.38 0.96 16 30 H 0.09 2.40 6.10 -51.93 -0.32 2.08 16 31 H 0.01 0.29 6.77 -51.93 -0.35 -0.06 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.08 1.36 7.63 -51.93 -0.40 0.97 16 34 H 0.04 0.64 8.02 -51.93 -0.42 0.22 16 35 H 0.07 0.83 7.76 -51.93 -0.40 0.42 16 36 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 37 H 0.13 1.53 5.55 -52.48 -0.29 1.24 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 43 H 0.07 0.96 7.53 -51.93 -0.39 0.57 16 44 H 0.06 1.10 7.61 -51.93 -0.40 0.71 16 45 H 0.09 1.75 7.96 -51.93 -0.41 1.33 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -28.17 351.53 -10.14 -38.30 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.37 Total: 1.45 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.53 Total: -20.56 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.33 Total: -35.74 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.17 Total: -4.91 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.17 -10.14 -38.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.060 kcal (2) G-P(sol) polarization free energy of solvation -28.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds