Wall clock time and date at job start Tue Mar 31 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46959 * 2 1 4 4 H 1.08994 * 109.47245 * 181.25273 * 3 2 1 5 5 C 1.50710 * 109.47137 * 301.25469 * 3 2 1 6 6 H 1.07997 * 120.00206 * 119.99809 * 5 3 2 7 7 C 1.37873 * 119.99574 * 299.99780 * 5 3 2 8 8 N 1.31520 * 120.00488 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00009 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47019 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47067 * 119.99989 * 9 7 5 12 12 H 1.48501 * 109.47566 * 240.00188 * 9 7 5 13 13 N 1.46898 * 109.47183 * 61.24960 * 3 2 1 14 14 C 1.48538 * 111.00062 * 54.93981 * 13 3 2 15 15 C 1.54934 * 103.22783 * 159.71894 * 14 13 3 16 16 C 1.54594 * 102.92491 * 322.58526 * 15 14 13 17 17 H 1.09003 * 110.30640 * 263.04608 * 16 15 14 18 18 O 1.42898 * 110.31095 * 140.87326 * 16 15 14 19 19 C 1.35899 * 116.99607 * 88.90591 * 18 16 15 20 20 C 1.38745 * 120.05837 * 354.39157 * 19 18 16 21 21 C 1.38124 * 119.94429 * 180.02562 * 20 19 18 22 22 C 1.38291 * 120.05682 * 0.02637 * 21 20 19 23 23 C 1.38240 * 120.10940 * 359.95311 * 22 21 20 24 24 C 1.38172 * 120.05782 * 359.77173 * 23 22 21 25 25 C 1.50698 * 120.03119 * 180.25208 * 24 23 22 26 26 C 1.47901 * 111.00028 * 172.33399 * 13 3 2 27 27 H 1.09006 * 109.47124 * 185.40815 * 1 2 3 28 28 H 1.08995 * 109.47404 * 305.40555 * 1 2 3 29 29 H 1.09003 * 109.47263 * 65.40814 * 1 2 3 30 30 H 1.08992 * 109.47454 * 239.99879 * 2 1 3 31 31 H 1.08999 * 109.46944 * 119.99267 * 2 1 3 32 32 H 0.96989 * 120.00283 * 179.97438 * 8 7 5 33 33 H 1.09003 * 110.66261 * 278.15339 * 14 13 3 34 34 H 1.08998 * 110.66423 * 41.28459 * 14 13 3 35 35 H 1.08993 * 110.72288 * 204.22541 * 15 14 13 36 36 H 1.09003 * 110.87585 * 81.01471 * 15 14 13 37 37 H 1.08004 * 120.03075 * 359.97438 * 20 19 18 38 38 H 1.08000 * 119.97302 * 180.02562 * 21 20 19 39 39 H 1.07995 * 119.94168 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.97057 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.46902 * 270.27555 * 25 24 23 42 42 H 1.09003 * 109.46977 * 30.27405 * 25 24 23 43 43 H 1.08993 * 109.46991 * 150.27050 * 25 24 23 44 44 H 1.09003 * 109.91614 * 333.50692 * 26 13 3 45 45 H 1.08995 * 109.92056 * 94.80407 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0225 5 6 1.5123 2.1619 -1.2147 6 1 0.8936 3.0391 -1.0964 7 6 1.8196 1.7000 -2.4769 8 7 2.5726 0.6314 -2.6210 9 14 1.1651 2.5911 -3.9825 10 1 0.3487 3.7548 -3.5530 11 1 2.3029 3.0641 -4.8112 12 1 0.3238 1.6631 -4.7803 13 7 1.5751 2.1262 1.2142 14 6 1.9742 1.3768 2.4330 15 6 1.8914 2.4470 3.5503 16 6 2.4028 3.7239 2.8446 17 1 3.4601 3.8776 3.0603 18 8 1.6405 4.8591 3.2597 19 6 2.0767 5.5259 4.3606 20 6 3.1445 5.0308 5.0953 21 6 3.5855 5.7102 6.2141 22 6 2.9633 6.8825 6.6026 23 6 1.8994 7.3780 5.8721 24 6 1.4581 6.7052 4.7488 25 6 0.3019 7.2489 3.9497 26 6 2.1965 3.4623 1.3410 27 1 -0.3634 -1.0231 0.0969 28 1 -0.3634 0.5953 0.8376 29 1 -0.3634 0.4277 -0.9345 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 2.7884 0.3062 -3.5089 33 1 1.2775 0.5616 2.6287 34 1 2.9922 0.9994 2.3364 35 1 2.5389 2.1827 4.3862 36 1 0.8630 2.5780 3.8872 37 1 3.6300 4.1146 4.7930 38 1 4.4169 5.3255 6.7861 39 1 3.3094 7.4119 7.4780 40 1 1.4154 8.2940 6.1773 41 1 -0.6318 6.8445 4.3403 42 1 0.2871 8.3362 4.0258 43 1 0.4144 6.9594 2.9049 44 1 3.1575 3.4752 0.8267 45 1 1.5365 4.2204 0.9194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:14 Heat of formation + Delta-G solvation = -26.652671 kcal Electronic energy + Delta-G solvation = -23440.389608 eV Core-core repulsion = 20229.222474 eV Total energy + Delta-G solvation = -3211.167134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44745 -39.83474 -38.10881 -35.78982 -33.74695 -33.25059 -31.13426 -30.98154 -29.31857 -27.94881 -27.58933 -25.35169 -23.73037 -23.03405 -22.32275 -21.35468 -20.75339 -19.18884 -18.09776 -17.38791 -16.83278 -16.60158 -16.27088 -16.14890 -15.74043 -15.24096 -15.04981 -14.71493 -14.39220 -14.14754 -14.02357 -13.96555 -13.51078 -13.40471 -13.14528 -13.11437 -12.87674 -12.77260 -12.61625 -12.41675 -12.40556 -12.19083 -12.05968 -11.76476 -11.66452 -11.50023 -11.49653 -11.28847 -10.84759 -10.47692 -9.72612 -9.04795 -9.00457 -8.09462 -6.18579 0.41364 0.53826 1.38598 1.41757 1.52661 2.23393 2.42547 2.85149 3.18576 3.31956 3.57954 3.71502 3.88455 3.96800 4.03978 4.23756 4.29549 4.40391 4.44719 4.47665 4.58347 4.66801 4.72928 4.75159 4.81081 4.83063 4.83742 4.85637 4.95232 4.98976 5.03796 5.12583 5.24052 5.34924 5.38204 5.44687 5.47639 5.57750 5.63734 5.71426 5.74481 5.85103 5.96448 6.25772 6.33870 6.55011 6.63520 6.92563 7.49110 8.96187 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.003850 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.348448 B = 7270.551971 C = 7912.285952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C 0.215 3.785 4 H -0.035 1.035 5 C -0.503 4.503 6 H 0.048 0.952 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.512 5.512 14 C 0.035 3.965 15 C -0.128 4.128 16 C 0.084 3.916 17 H 0.088 0.912 18 O -0.315 6.315 19 C 0.106 3.894 20 C -0.217 4.217 21 C -0.091 4.091 22 C -0.159 4.159 23 C -0.087 4.087 24 C -0.140 4.140 25 C -0.103 4.103 26 C 0.057 3.943 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.260 0.740 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.038 0.962 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 9.464 18.443 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.145 4.145 3 C 0.108 3.892 4 H -0.017 1.017 5 C -0.541 4.541 6 H 0.067 0.933 7 C -0.182 4.182 8 N -0.558 5.558 9 Si 0.775 3.225 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.237 5.237 14 C -0.093 4.093 15 C -0.166 4.166 16 C 0.027 3.973 17 H 0.106 0.894 18 O -0.229 6.229 19 C 0.060 3.940 20 C -0.236 4.236 21 C -0.109 4.109 22 C -0.177 4.177 23 C -0.105 4.105 24 C -0.140 4.140 25 C -0.160 4.160 26 C -0.071 4.071 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.003 9.426 18.107 20.413 hybrid contribution 0.945 -0.106 -1.380 1.676 sum 0.948 9.320 16.727 19.172 Atomic orbital electron populations 1.21332 0.95891 0.98699 1.00742 1.21432 0.96385 0.97105 0.99563 1.19273 0.90807 0.92029 0.87093 1.01733 1.21230 1.30540 1.11565 0.90812 0.93330 1.25553 0.95527 0.95781 1.01306 1.69998 1.38503 1.24172 1.23126 0.85642 0.78159 0.78794 0.79892 1.19605 1.20790 1.20583 1.64802 1.54845 1.01591 1.02456 1.23175 0.98975 0.97115 0.90006 1.22958 1.02903 0.93065 0.97633 1.23320 0.95175 0.84688 0.94122 0.89430 1.86166 1.52276 1.42036 1.42401 1.19253 0.94621 0.92542 0.87539 1.21476 0.99585 1.03337 0.99176 1.21265 0.99524 0.94901 0.95220 1.21396 0.97342 0.97266 1.01712 1.21202 0.96502 0.99901 0.92911 1.19619 1.00879 0.94269 0.99273 1.20593 0.95274 1.01376 0.98739 1.22565 0.97831 0.93592 0.93153 0.94133 0.92973 0.95076 0.91950 0.94802 0.93060 0.89666 0.94529 0.88447 0.90252 0.84994 0.83634 0.83294 0.83153 0.91249 0.89830 0.93081 0.94351 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.77 9.47 71.98 0.68 -4.09 16 2 C -0.11 -5.05 5.10 30.59 0.16 -4.89 16 3 C 0.22 10.79 1.51 44.17 0.07 10.86 16 4 H -0.03 -1.95 7.88 -2.39 -0.02 -1.97 16 5 C -0.50 -27.66 7.00 25.60 0.18 -27.48 16 6 H 0.05 2.75 7.72 -2.91 -0.02 2.73 16 7 C 0.02 0.93 5.30 84.65 0.45 1.38 16 8 N -0.92 -52.51 11.33 21.45 0.24 -52.27 16 9 Si 0.95 44.29 29.54 68.60 2.03 46.32 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 N -0.51 -21.76 4.30 -862.21 -3.70 -25.46 16 14 C 0.04 1.20 5.19 86.65 0.45 1.65 16 15 C -0.13 -3.62 6.47 31.80 0.21 -3.41 16 16 C 0.08 2.62 2.84 31.48 0.09 2.71 16 17 H 0.09 2.46 6.26 -2.39 -0.01 2.44 16 18 O -0.31 -10.19 8.78 -92.42 -0.81 -11.00 16 19 C 0.11 2.93 6.63 22.51 0.15 3.08 16 20 C -0.22 -5.11 8.85 22.36 0.20 -4.92 16 21 C -0.09 -1.71 10.04 22.26 0.22 -1.49 16 22 C -0.16 -2.71 10.04 22.28 0.22 -2.48 16 23 C -0.09 -1.65 9.70 22.25 0.22 -1.43 16 24 C -0.14 -3.42 5.89 -19.77 -0.12 -3.54 16 25 C -0.10 -2.32 9.79 71.24 0.70 -1.63 16 26 C 0.06 2.28 5.85 86.45 0.51 2.78 16 27 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.05 2.19 7.48 -2.39 -0.02 2.17 16 29 H 0.03 1.48 7.38 -2.39 -0.02 1.46 16 30 H 0.06 3.35 6.10 -2.39 -0.01 3.33 16 31 H 0.03 1.43 6.77 -2.39 -0.02 1.42 16 32 H 0.26 14.20 8.31 -92.72 -0.77 13.43 16 33 H 0.09 2.81 7.63 -2.39 -0.02 2.79 16 34 H 0.04 1.26 8.02 -2.39 -0.02 1.24 16 35 H 0.10 2.17 7.76 -2.39 -0.02 2.16 16 36 H 0.08 2.34 8.08 -2.39 -0.02 2.32 16 37 H 0.13 2.88 5.55 -2.91 -0.02 2.86 16 38 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 40 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 43 H 0.05 1.36 7.53 -2.39 -0.02 1.34 16 44 H 0.04 1.63 7.61 -2.39 -0.02 1.61 16 45 H 0.07 2.85 7.96 -2.39 -0.02 2.83 16 Total: -1.00 -62.48 351.53 3.08 -59.40 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.95 Total: 15.90 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 4.37 Total: -32.89 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -3.46 Total: -77.74 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.81 Total: -11.00 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -62.48 3.08 -59.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.751 kcal (2) G-P(sol) polarization free energy of solvation -62.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds