Wall clock time and date at job start Tue Mar 31 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47034 * 2 1 4 4 H 1.08997 * 109.46930 * 305.44776 * 3 2 1 5 5 C 1.50703 * 109.47100 * 65.44601 * 3 2 1 6 6 H 1.07994 * 119.99819 * 84.23796 * 5 3 2 7 7 C 1.37873 * 119.99998 * 264.22592 * 5 3 2 8 8 N 1.31516 * 119.99736 * 157.85455 * 7 5 3 9 9 Si 1.86796 * 120.00475 * 337.85782 * 7 5 3 10 10 H 1.48500 * 109.47450 * 92.97850 * 9 7 5 11 11 H 1.48502 * 109.47674 * 212.98540 * 9 7 5 12 12 H 1.48511 * 109.46963 * 332.98468 * 9 7 5 13 13 N 1.46902 * 109.47179 * 185.44831 * 3 2 1 14 14 C 1.47899 * 110.99642 * 301.19337 * 13 3 2 15 15 C 1.53999 * 107.05463 * 145.84530 * 14 13 3 16 16 C 1.54594 * 105.14106 * 358.77093 * 15 14 13 17 17 H 1.08997 * 110.72156 * 96.58179 * 16 15 14 18 18 O 1.42900 * 110.72309 * 219.68567 * 16 15 14 19 19 C 1.35898 * 117.00130 * 276.30392 * 18 16 15 20 20 C 1.38757 * 120.05463 * 357.05462 * 19 18 16 21 21 C 1.38119 * 119.94294 * 179.97438 * 20 19 18 22 22 C 1.38284 * 120.05795 * 359.97438 * 21 20 19 23 23 C 1.38242 * 120.11010 * 0.29879 * 22 21 20 24 24 C 1.38168 * 120.05708 * 359.44422 * 23 22 21 25 25 C 1.50698 * 120.03029 * 180.29120 * 24 23 22 26 26 C 1.48530 * 110.99667 * 58.58801 * 13 3 2 27 27 H 1.09005 * 109.47578 * 306.78264 * 1 2 3 28 28 H 1.09003 * 109.47052 * 66.78353 * 1 2 3 29 29 H 1.09005 * 109.47372 * 186.78317 * 1 2 3 30 30 H 1.08999 * 109.47096 * 239.99352 * 2 1 3 31 31 H 1.09005 * 109.46729 * 119.99463 * 2 1 3 32 32 H 0.97003 * 119.99918 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.92453 * 26.49200 * 14 13 3 34 34 H 1.09003 * 109.91732 * 265.19669 * 14 13 3 35 35 H 1.09004 * 110.30596 * 239.85341 * 15 14 13 36 36 H 1.08998 * 110.30712 * 117.69217 * 15 14 13 37 37 H 1.07997 * 120.02816 * 359.97438 * 20 19 18 38 38 H 1.08007 * 119.97334 * 179.97438 * 21 20 19 39 39 H 1.08008 * 119.94707 * 180.02562 * 22 21 20 40 40 H 1.08005 * 119.97146 * 179.72799 * 23 22 21 41 41 H 1.08998 * 109.47559 * 270.23728 * 25 24 23 42 42 H 1.09000 * 109.47123 * 30.24338 * 25 24 23 43 43 H 1.09003 * 109.47094 * 150.23825 * 25 24 23 44 44 H 1.09001 * 110.66569 * 81.84768 * 26 13 3 45 45 H 1.08999 * 110.67086 * 318.71130 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9837 -0.8372 5 6 1.6507 2.1129 1.2924 6 1 2.2675 1.9919 2.1705 7 6 0.5074 2.8810 1.3534 8 7 -0.0745 3.1030 2.5118 9 14 -0.2153 3.6062 -0.2089 10 1 -1.2403 2.6814 -0.7560 11 1 -0.8439 4.9162 0.0979 12 1 0.8638 3.7976 -1.2111 13 7 3.5031 1.4446 -0.1315 14 6 4.1356 0.6932 0.9742 15 6 5.3892 0.0100 0.3970 16 6 5.4056 0.3950 -1.1002 17 1 6.0566 1.2524 -1.2709 18 8 5.8130 -0.7147 -1.9032 19 6 7.1495 -0.9206 -2.0385 20 6 8.0507 -0.0369 -1.4621 21 6 9.4085 -0.2487 -1.6007 22 6 9.8700 -1.3406 -2.3127 23 6 8.9742 -2.2194 -2.8927 24 6 7.6150 -2.0149 -2.7525 25 6 6.6390 -2.9769 -3.3795 26 6 3.9262 0.7605 -1.3801 27 1 -0.3634 0.6154 0.8231 28 1 -0.3633 0.4051 -0.9445 29 1 -0.3634 -1.0205 0.1214 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 -0.8791 3.6431 2.5548 33 1 3.4449 -0.0590 1.3550 34 1 4.4205 1.3778 1.7732 35 1 5.3158 -1.0718 0.5087 36 1 6.2854 0.3824 0.8932 37 1 7.6907 0.8158 -0.9056 38 1 10.1104 0.4391 -1.1526 39 1 10.9322 -1.5048 -2.4196 40 1 9.3372 -3.0690 -3.4520 41 1 6.4031 -2.6474 -4.3914 42 1 7.0821 -3.9722 -3.4155 43 1 5.7258 -3.0071 -2.7851 44 1 3.8514 1.4353 -2.2328 45 1 3.3327 -0.1385 -1.5464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:19 Heat of formation + Delta-G solvation = -21.107291 kcal Electronic energy + Delta-G solvation = -23466.635965 eV Core-core repulsion = 20255.709296 eV Total energy + Delta-G solvation = -3210.926668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.49501 -40.05269 -38.19458 -35.68469 -33.86990 -33.54091 -31.30227 -30.93046 -29.70471 -28.14770 -27.55931 -24.99803 -23.97369 -23.24723 -22.30293 -21.57638 -20.52205 -19.11421 -18.77827 -17.40786 -16.83520 -16.60454 -16.19697 -16.03021 -15.77765 -15.43182 -15.18673 -14.92403 -14.62181 -14.43263 -14.18279 -14.01428 -13.85148 -13.65847 -13.14466 -13.10089 -12.88234 -12.76301 -12.62420 -12.34525 -12.28899 -12.21252 -12.17957 -11.84746 -11.73829 -11.65171 -11.57720 -11.35132 -11.02879 -10.41072 -9.73161 -9.06545 -9.02724 -8.29788 -6.22181 0.40838 0.52833 1.32948 1.39252 1.48147 2.12061 2.36505 2.84154 2.99378 3.40010 3.59093 3.70977 3.84517 3.92660 4.02413 4.15268 4.24449 4.27783 4.37635 4.44336 4.46170 4.48433 4.58489 4.64011 4.73228 4.75077 4.81250 4.83502 4.84156 4.93839 4.99092 5.03820 5.08950 5.16950 5.20458 5.34444 5.45854 5.46864 5.49709 5.57097 5.63415 5.68580 5.92332 6.01993 6.27530 6.51249 6.57644 6.78596 7.37951 8.86382 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030071 B = 0.003647 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.919713 B = 7676.262017 C = 7999.211901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.142 4.142 3 C 0.177 3.823 4 H 0.040 0.960 5 C -0.502 4.502 6 H 0.039 0.961 7 C 0.039 3.961 8 N -0.931 5.931 9 Si 0.913 3.087 10 H -0.260 1.260 11 H -0.291 1.291 12 H -0.256 1.256 13 N -0.515 5.515 14 C 0.048 3.952 15 C -0.140 4.140 16 C 0.092 3.908 17 H 0.092 0.908 18 O -0.314 6.314 19 C 0.108 3.892 20 C -0.217 4.217 21 C -0.093 4.093 22 C -0.159 4.159 23 C -0.088 4.088 24 C -0.138 4.138 25 C -0.102 4.102 26 C 0.031 3.969 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.265 0.735 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.232 -10.915 -12.176 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.182 4.182 3 C 0.070 3.930 4 H 0.058 0.942 5 C -0.539 4.539 6 H 0.057 0.943 7 C -0.161 4.161 8 N -0.570 5.570 9 Si 0.738 3.262 10 H -0.185 1.185 11 H -0.218 1.218 12 H -0.180 1.180 13 N -0.239 5.239 14 C -0.080 4.080 15 C -0.178 4.178 16 C 0.035 3.965 17 H 0.110 0.890 18 O -0.228 6.228 19 C 0.063 3.937 20 C -0.236 4.236 21 C -0.111 4.111 22 C -0.177 4.177 23 C -0.105 4.105 24 C -0.139 4.139 25 C -0.159 4.159 26 C -0.097 4.097 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.147 0.853 38 H 0.160 0.840 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.076 -10.379 -12.154 23.389 hybrid contribution -1.035 0.220 0.184 1.074 sum 16.041 -10.159 -11.970 22.446 Atomic orbital electron populations 1.21668 0.96123 1.01097 1.01023 1.22181 0.96668 0.99494 0.99819 1.19832 0.84404 0.92820 0.95977 0.94168 1.20863 1.07433 1.30466 0.95188 0.94270 1.25530 0.96334 0.96138 0.98083 1.70131 1.19853 1.39754 1.27268 0.86257 0.79259 0.78639 0.82028 1.18494 1.21757 1.18019 1.65123 1.09988 1.47862 1.00919 1.22606 0.94493 0.95862 0.95018 1.22896 0.98708 1.01041 0.95179 1.23219 0.96038 0.87719 0.89523 0.89023 1.86057 1.20654 1.48805 1.67247 1.19165 0.82533 0.95270 0.96727 1.21481 0.94755 1.01439 1.05930 1.21252 0.94384 0.97884 0.97570 1.21394 1.00975 0.95535 0.99784 1.21210 0.90851 0.99966 0.98519 1.19617 0.95816 0.96203 1.02229 1.20602 0.97427 0.97692 1.00190 1.23279 0.93062 0.98446 0.94883 0.93634 0.93670 0.92150 0.92216 0.93302 0.92560 0.93931 0.92130 0.90676 0.89533 0.85260 0.83960 0.83417 0.83064 0.91114 0.89892 0.92676 0.89496 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.71 8.92 71.98 0.64 -5.06 16 2 C -0.14 -5.79 4.75 30.59 0.15 -5.64 16 3 C 0.18 8.10 1.90 44.17 0.08 8.18 16 4 H 0.04 1.89 5.10 -2.39 -0.01 1.88 16 5 C -0.50 -27.55 7.97 25.60 0.20 -27.35 16 6 H 0.04 2.39 7.22 -2.91 -0.02 2.37 16 7 C 0.04 2.17 4.15 84.65 0.35 2.52 16 8 N -0.93 -56.17 13.96 21.45 0.30 -55.88 16 9 Si 0.91 43.28 26.11 68.60 1.79 45.07 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.26 -11.73 6.66 99.48 0.66 -11.07 16 13 N -0.51 -20.89 5.31 -862.24 -4.58 -25.46 16 14 C 0.05 1.81 5.31 86.45 0.46 2.27 16 15 C -0.14 -4.12 6.31 31.47 0.20 -3.92 16 16 C 0.09 2.66 2.90 31.80 0.09 2.76 16 17 H 0.09 2.52 6.25 -2.39 -0.01 2.50 16 18 O -0.31 -8.98 8.94 -92.41 -0.83 -9.81 16 19 C 0.11 2.78 6.58 22.51 0.15 2.92 16 20 C -0.22 -5.02 8.89 22.37 0.20 -4.83 16 21 C -0.09 -1.73 10.04 22.25 0.22 -1.51 16 22 C -0.16 -2.60 10.04 22.28 0.22 -2.38 16 23 C -0.09 -1.52 9.70 22.25 0.22 -1.31 16 24 C -0.14 -3.05 5.89 -19.77 -0.12 -3.17 16 25 C -0.10 -1.95 9.79 71.24 0.70 -1.25 16 26 C 0.03 1.04 6.11 86.65 0.53 1.57 16 27 H 0.04 2.15 5.97 -2.38 -0.01 2.14 16 28 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 29 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.06 2.15 5.79 -2.39 -0.01 2.13 16 31 H 0.05 2.06 6.17 -2.38 -0.01 2.04 16 32 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.04 1.71 5.50 -2.39 -0.01 1.69 16 34 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 35 H 0.07 2.17 8.07 -2.38 -0.02 2.15 16 36 H 0.09 2.25 7.92 -2.39 -0.02 2.23 16 37 H 0.13 2.92 5.66 -2.91 -0.02 2.90 16 38 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 43 H 0.05 1.22 7.53 -2.39 -0.02 1.20 16 44 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.06 1.99 5.55 -2.39 -0.01 1.98 16 Total: -1.00 -63.19 342.23 1.92 -61.28 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.93 Total: 20.99 kcal Atomic # 6 Polarization: -40.49 SS G_CDS: 4.30 Total: -36.19 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -4.28 Total: -81.34 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.83 Total: -9.81 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.79 Total: 45.07 kcal Total: -63.19 1.92 -61.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.170 kcal (2) G-P(sol) polarization free energy of solvation -63.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds