Wall clock time and date at job start Tue Mar 31 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47076 * 2 1 4 4 H 1.09003 * 109.47235 * 53.57829 * 3 2 1 5 5 C 1.50698 * 109.47223 * 173.57830 * 3 2 1 6 6 H 1.08002 * 120.00021 * 119.99539 * 5 3 2 7 7 C 1.37880 * 120.00243 * 300.00077 * 5 3 2 8 8 N 1.31516 * 120.00135 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99906 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47273 * 90.00018 * 9 7 5 11 11 H 1.48497 * 109.47127 * 210.00191 * 9 7 5 12 12 H 1.48505 * 109.46734 * 329.99811 * 9 7 5 13 13 N 1.46900 * 109.46923 * 293.57805 * 3 2 1 14 14 C 1.47441 * 110.99612 * 72.85202 * 13 3 2 15 15 C 1.54321 * 107.23451 * 123.25971 * 14 13 3 16 16 C 1.55258 * 103.08519 * 22.20020 * 15 14 13 17 17 C 1.47841 * 111.00054 * 193.69080 * 13 3 2 18 18 H 1.09003 * 110.37259 * 332.58453 * 17 13 3 19 19 C 1.50701 * 110.37327 * 94.80720 * 17 13 3 20 20 C 1.38161 * 120.02742 * 23.44572 * 19 17 13 21 21 C 1.38245 * 120.06011 * 179.97438 * 20 19 17 22 22 C 1.38294 * 120.10842 * 0.02562 * 21 20 19 23 23 C 1.38126 * 120.05390 * 0.02562 * 22 21 20 24 24 C 1.38708 * 120.02771 * 203.44869 * 19 17 13 25 25 O 1.35895 * 120.05986 * 0.04499 * 24 19 17 26 26 C 1.42897 * 117.00222 * 179.97438 * 25 24 19 27 27 H 1.09005 * 109.47314 * 308.83953 * 1 2 3 28 28 H 1.08997 * 109.47518 * 68.84217 * 1 2 3 29 29 H 1.09005 * 109.46877 * 188.84536 * 1 2 3 30 30 H 1.09001 * 109.47294 * 240.00082 * 2 1 3 31 31 H 1.09003 * 109.47312 * 119.99569 * 2 1 3 32 32 H 0.97001 * 119.99946 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.88488 * 242.66124 * 14 13 3 34 34 H 1.08998 * 109.89432 * 3.84857 * 14 13 3 35 35 H 1.08997 * 110.70827 * 140.66423 * 15 14 13 36 36 H 1.09007 * 110.70245 * 263.89947 * 15 14 13 37 37 H 1.09002 * 111.08562 * 206.38906 * 16 15 14 38 38 H 1.08994 * 110.94632 * 82.53396 * 16 15 14 39 39 H 1.07999 * 119.97166 * 359.97438 * 20 19 17 40 40 H 1.07998 * 119.94967 * 180.28310 * 21 20 19 41 41 H 1.07998 * 119.96903 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.02600 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47725 * 299.99922 * 26 25 24 44 44 H 1.09001 * 109.47304 * 60.00095 * 26 25 24 45 45 H 1.09008 * 109.47161 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5858 1.9885 0.8269 5 6 3.5385 1.4456 0.1589 6 1 4.1618 1.8837 -0.6065 7 6 4.1139 0.8889 1.2814 8 7 5.4218 0.8911 1.4199 9 14 3.0359 0.1303 2.6050 10 1 2.8222 -1.3083 2.3051 11 1 3.7024 0.2671 3.9249 12 1 1.7260 0.8291 2.6372 13 7 1.6808 2.0888 -1.2694 14 6 0.2365 2.3804 -1.3237 15 6 0.0850 3.8959 -1.5722 16 6 1.4465 4.2856 -2.2086 17 6 2.4236 3.3546 -1.4482 18 1 2.6806 3.7838 -0.4798 19 6 3.6686 3.1214 -2.2647 20 6 3.7434 2.0366 -3.1170 21 6 4.8850 1.8223 -3.8666 22 6 5.9550 2.6925 -3.7652 23 6 5.8856 3.7780 -2.9138 24 6 4.7405 3.9957 -2.1611 25 8 4.6698 5.0629 -1.3228 26 6 5.8113 5.9206 -1.2668 27 1 -0.3634 0.6445 0.8005 28 1 -0.3634 0.3709 -0.9583 29 1 -0.3633 -1.0155 0.1580 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8265 0.4997 2.2098 33 1 -0.2238 1.8230 -2.1396 34 1 -0.2321 2.1111 -0.3772 35 1 -0.7346 4.0931 -2.2631 36 1 -0.0653 4.4273 -0.6324 37 1 1.6809 5.3336 -2.0221 38 1 1.4532 4.0697 -3.2770 39 1 2.9093 1.3553 -3.1976 40 1 4.9398 0.9763 -4.5357 41 1 6.8459 2.5228 -4.3516 42 1 6.7217 4.4571 -2.8346 43 1 6.6799 5.3488 -0.9402 44 1 6.0016 6.3373 -2.2559 45 1 5.6231 6.7305 -0.5618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:00 Heat of formation + Delta-G solvation = 10.763116 kcal Electronic energy + Delta-G solvation = -24899.824584 eV Core-core repulsion = 21690.279920 eV Total energy + Delta-G solvation = -3209.544664 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89910 -38.44151 -36.58917 -34.37093 -32.17081 -31.25115 -29.69312 -29.41249 -27.66380 -26.88798 -26.25763 -23.07826 -21.90313 -21.42308 -20.66959 -20.08845 -19.03747 -17.45861 -16.71502 -15.84447 -15.58658 -15.18796 -14.99917 -14.40007 -14.19300 -13.71630 -13.40866 -13.25385 -13.03888 -12.74345 -12.57570 -12.26354 -12.13738 -12.03560 -11.71549 -11.56919 -11.42361 -11.19622 -10.79225 -10.76913 -10.57800 -10.49154 -10.45441 -10.20419 -9.99020 -9.83740 -9.74823 -9.26914 -8.93192 -8.47865 -7.97453 -7.42080 -7.27908 -5.95947 -3.94384 2.08968 2.17456 3.30597 3.41493 3.42465 3.86009 4.44342 4.49175 4.81928 5.16078 5.29954 5.32044 5.33474 5.46387 5.49420 5.54752 5.56960 5.75878 5.78277 5.87834 5.95235 6.00221 6.02452 6.12321 6.13644 6.18707 6.22060 6.33241 6.39774 6.48426 6.53796 6.63770 6.69762 6.73619 6.80575 6.87066 6.89778 7.02295 7.12513 7.26359 7.43388 7.53370 7.65811 8.01480 8.06655 8.15964 8.73519 9.17840 9.65715 11.15444 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.007970 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.595688 B = 3512.150989 C = 4363.922062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.119 4.119 3 C 0.183 3.817 4 H -0.002 1.002 5 C -0.512 4.512 6 H 0.100 0.900 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.877 3.123 10 H -0.280 1.280 11 H -0.300 1.300 12 H -0.268 1.268 13 N -0.512 5.512 14 C 0.034 3.966 15 C -0.143 4.143 16 C -0.121 4.121 17 C 0.137 3.863 18 H 0.073 0.927 19 C -0.060 4.060 20 C -0.046 4.046 21 C -0.164 4.164 22 C -0.096 4.096 23 C -0.213 4.213 24 C 0.128 3.872 25 O -0.311 6.311 26 C 0.031 3.969 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.136 0.864 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.787 6.843 -8.368 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.157 4.157 3 C 0.076 3.924 4 H 0.016 0.984 5 C -0.550 4.550 6 H 0.118 0.882 7 C -0.128 4.128 8 N -0.536 5.536 9 Si 0.708 3.292 10 H -0.207 1.207 11 H -0.228 1.228 12 H -0.194 1.194 13 N -0.237 5.237 14 C -0.094 4.094 15 C -0.182 4.182 16 C -0.159 4.159 17 C 0.029 3.971 18 H 0.091 0.909 19 C -0.062 4.062 20 C -0.065 4.065 21 C -0.182 4.182 22 C -0.114 4.114 23 C -0.232 4.232 24 C 0.083 3.917 25 O -0.225 6.225 26 C -0.064 4.064 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.154 0.846 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.666 6.496 -8.497 11.669 hybrid contribution -0.190 -0.109 1.628 1.643 sum -4.856 6.387 -6.868 10.562 Atomic orbital electron populations 1.22246 0.98487 0.99810 1.01354 1.21878 0.92947 0.99748 1.01109 1.19891 0.96976 0.90180 0.85369 0.98419 1.21408 0.89122 1.38079 1.06381 0.88230 1.24911 0.94615 0.95762 0.97555 1.69894 1.09266 1.45870 1.28546 0.87025 0.81055 0.79847 0.81264 1.20697 1.22800 1.19365 1.63300 1.01972 1.21811 1.36583 1.23168 0.91552 0.93825 1.00868 1.22843 0.97567 0.97448 1.00311 1.22757 0.94301 0.99061 0.99802 1.20949 0.90374 0.88857 0.96946 0.90867 1.18883 0.94210 0.94520 0.98539 1.20849 0.97731 0.95144 0.92727 1.20963 0.94622 1.00195 1.02454 1.20702 0.98041 0.94462 0.98236 1.20968 0.97809 1.01906 1.02474 1.18772 0.94116 0.88295 0.90533 1.86071 1.39716 1.36107 1.60567 1.22922 0.88818 0.93410 1.01266 0.93872 0.91726 0.94514 0.91469 0.93400 0.92942 0.91545 0.92217 0.91725 0.92045 0.91470 0.91342 0.84603 0.86935 0.87043 0.86540 0.92821 0.93491 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 8.33 37.15 0.31 -2.57 16 2 C -0.12 -2.60 5.09 -26.73 -0.14 -2.74 16 3 C 0.18 4.30 1.14 -68.86 -0.08 4.22 16 4 H 0.00 -0.04 6.89 -51.93 -0.36 -0.40 16 5 C -0.51 -14.13 8.24 -34.44 -0.28 -14.42 16 6 H 0.10 2.93 4.60 -52.49 -0.24 2.69 16 7 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 8 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 9 Si 0.88 22.27 24.42 -169.99 -4.15 18.12 16 10 H -0.28 -6.97 6.82 56.52 0.39 -6.58 16 11 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 12 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 13 N -0.51 -10.31 3.45 -218.21 -0.75 -11.06 16 14 C 0.03 0.57 4.86 -2.84 -0.01 0.55 16 15 C -0.14 -2.11 6.94 -24.84 -0.17 -2.28 16 16 C -0.12 -1.95 6.50 -24.53 -0.16 -2.11 16 17 C 0.14 2.74 1.80 -67.34 -0.12 2.62 16 18 H 0.07 1.70 7.03 -51.93 -0.36 1.34 16 19 C -0.06 -1.23 2.75 -104.48 -0.29 -1.52 16 20 C -0.05 -0.91 8.93 -39.61 -0.35 -1.26 16 21 C -0.16 -2.92 10.04 -39.56 -0.40 -3.32 16 22 C -0.10 -1.65 10.04 -39.60 -0.40 -2.05 16 23 C -0.21 -3.81 9.04 -39.43 -0.36 -4.16 16 24 C 0.13 2.54 6.59 -39.22 -0.26 2.29 16 25 O -0.31 -5.89 9.65 -19.41 -0.19 -6.08 16 26 C 0.03 0.44 9.81 101.05 0.99 1.43 16 27 H 0.04 0.76 7.36 -51.93 -0.38 0.38 16 28 H 0.06 1.04 5.27 -51.93 -0.27 0.77 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.05 1.13 3.21 -51.93 -0.17 0.96 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.07 1.01 7.43 -51.93 -0.39 0.63 16 34 H 0.06 1.01 4.95 -51.93 -0.26 0.76 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.06 8.05 -51.93 -0.42 0.64 16 39 H 0.14 2.63 7.26 -52.49 -0.38 2.25 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.12 1.78 6.30 -52.48 -0.33 1.45 16 43 H 0.05 0.77 7.66 -51.93 -0.40 0.37 16 44 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 45 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 LS Contribution 334.42 15.07 5.04 5.04 Total: -1.00 -31.13 334.42 -8.01 -39.14 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.92 Total: 4.91 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -1.81 Total: -23.30 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.02 Total: -37.84 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.19 Total: -6.08 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.15 Total: 18.12 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.13 -8.01 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.900 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds