Wall clock time and date at job start Tue Mar 31 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47076 * 2 1 4 4 H 1.09003 * 109.47235 * 53.57829 * 3 2 1 5 5 C 1.50698 * 109.47223 * 173.57830 * 3 2 1 6 6 H 1.08002 * 120.00021 * 119.99539 * 5 3 2 7 7 C 1.37880 * 120.00243 * 300.00077 * 5 3 2 8 8 N 1.31516 * 120.00135 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99906 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47273 * 90.00018 * 9 7 5 11 11 H 1.48497 * 109.47127 * 210.00191 * 9 7 5 12 12 H 1.48505 * 109.46734 * 329.99811 * 9 7 5 13 13 N 1.46900 * 109.46923 * 293.57805 * 3 2 1 14 14 C 1.47441 * 110.99612 * 72.85202 * 13 3 2 15 15 C 1.54321 * 107.23451 * 123.25971 * 14 13 3 16 16 C 1.55258 * 103.08519 * 22.20020 * 15 14 13 17 17 C 1.47841 * 111.00054 * 193.69080 * 13 3 2 18 18 H 1.09003 * 110.37259 * 332.58453 * 17 13 3 19 19 C 1.50701 * 110.37327 * 94.80720 * 17 13 3 20 20 C 1.38161 * 120.02742 * 23.44572 * 19 17 13 21 21 C 1.38245 * 120.06011 * 179.97438 * 20 19 17 22 22 C 1.38294 * 120.10842 * 0.02562 * 21 20 19 23 23 C 1.38126 * 120.05390 * 0.02562 * 22 21 20 24 24 C 1.38708 * 120.02771 * 203.44869 * 19 17 13 25 25 O 1.35895 * 120.05986 * 0.04499 * 24 19 17 26 26 C 1.42897 * 117.00222 * 179.97438 * 25 24 19 27 27 H 1.09005 * 109.47314 * 308.83953 * 1 2 3 28 28 H 1.08997 * 109.47518 * 68.84217 * 1 2 3 29 29 H 1.09005 * 109.46877 * 188.84536 * 1 2 3 30 30 H 1.09001 * 109.47294 * 240.00082 * 2 1 3 31 31 H 1.09003 * 109.47312 * 119.99569 * 2 1 3 32 32 H 0.97001 * 119.99946 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.88488 * 242.66124 * 14 13 3 34 34 H 1.08998 * 109.89432 * 3.84857 * 14 13 3 35 35 H 1.08997 * 110.70827 * 140.66423 * 15 14 13 36 36 H 1.09007 * 110.70245 * 263.89947 * 15 14 13 37 37 H 1.09002 * 111.08562 * 206.38906 * 16 15 14 38 38 H 1.08994 * 110.94632 * 82.53396 * 16 15 14 39 39 H 1.07999 * 119.97166 * 359.97438 * 20 19 17 40 40 H 1.07998 * 119.94967 * 180.28310 * 21 20 19 41 41 H 1.07998 * 119.96903 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.02600 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47725 * 299.99922 * 26 25 24 44 44 H 1.09001 * 109.47304 * 60.00095 * 26 25 24 45 45 H 1.09008 * 109.47161 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5858 1.9885 0.8269 5 6 3.5385 1.4456 0.1589 6 1 4.1618 1.8837 -0.6065 7 6 4.1139 0.8889 1.2814 8 7 5.4218 0.8911 1.4199 9 14 3.0359 0.1303 2.6050 10 1 2.8222 -1.3083 2.3051 11 1 3.7024 0.2671 3.9249 12 1 1.7260 0.8291 2.6372 13 7 1.6808 2.0888 -1.2694 14 6 0.2365 2.3804 -1.3237 15 6 0.0850 3.8959 -1.5722 16 6 1.4465 4.2856 -2.2086 17 6 2.4236 3.3546 -1.4482 18 1 2.6806 3.7838 -0.4798 19 6 3.6686 3.1214 -2.2647 20 6 3.7434 2.0366 -3.1170 21 6 4.8850 1.8223 -3.8666 22 6 5.9550 2.6925 -3.7652 23 6 5.8856 3.7780 -2.9138 24 6 4.7405 3.9957 -2.1611 25 8 4.6698 5.0629 -1.3228 26 6 5.8113 5.9206 -1.2668 27 1 -0.3634 0.6445 0.8005 28 1 -0.3634 0.3709 -0.9583 29 1 -0.3633 -1.0155 0.1580 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8265 0.4997 2.2098 33 1 -0.2238 1.8230 -2.1396 34 1 -0.2321 2.1111 -0.3772 35 1 -0.7346 4.0931 -2.2631 36 1 -0.0653 4.4273 -0.6324 37 1 1.6809 5.3336 -2.0221 38 1 1.4532 4.0697 -3.2770 39 1 2.9093 1.3553 -3.1976 40 1 4.9398 0.9763 -4.5357 41 1 6.8459 2.5228 -4.3516 42 1 6.7217 4.4571 -2.8346 43 1 6.6799 5.3488 -0.9402 44 1 6.0016 6.3373 -2.2559 45 1 5.6231 6.7305 -0.5618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:59 Heat of formation + Delta-G solvation = -8.553813 kcal Electronic energy + Delta-G solvation = -24900.662228 eV Core-core repulsion = 21690.279920 eV Total energy + Delta-G solvation = -3210.382309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.33753 -39.91505 -37.98024 -36.05458 -34.12541 -32.76936 -31.19239 -30.82369 -29.20782 -28.30775 -27.70964 -24.84296 -23.38960 -22.83061 -22.20154 -21.57710 -20.61746 -18.91546 -18.63858 -17.43129 -17.12822 -16.51132 -16.50024 -15.99132 -15.78562 -15.20541 -15.04712 -14.62857 -14.50423 -14.37081 -14.09626 -13.87591 -13.80899 -13.41215 -13.29696 -13.04381 -12.83762 -12.59298 -12.43908 -12.30032 -12.15645 -11.95272 -11.86967 -11.72384 -11.58386 -11.36456 -11.32679 -11.04989 -10.87469 -10.60678 -9.44638 -8.97010 -8.79735 -8.17073 -6.18325 0.66173 0.73430 1.26661 1.31853 1.40317 2.34865 2.57713 3.02928 3.13263 3.30192 3.84600 3.99475 4.08624 4.15137 4.22095 4.34937 4.37814 4.41313 4.42167 4.44899 4.54685 4.60474 4.66382 4.71471 4.75561 4.81262 4.88046 4.97922 5.01271 5.07347 5.10180 5.15572 5.19489 5.26657 5.30875 5.35012 5.45176 5.49971 5.60004 5.72139 5.78337 5.86630 6.12768 6.18660 6.45502 6.66681 6.79655 6.97091 7.45249 8.96408 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.007970 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.595688 B = 3512.150989 C = 4363.922062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.190 3.810 4 H -0.020 1.020 5 C -0.505 4.505 6 H 0.075 0.925 7 C 0.015 3.985 8 N -0.946 5.946 9 Si 0.933 3.067 10 H -0.270 1.270 11 H -0.306 1.306 12 H -0.255 1.255 13 N -0.514 5.514 14 C 0.027 3.973 15 C -0.134 4.134 16 C -0.111 4.111 17 C 0.138 3.862 18 H 0.028 0.972 19 C -0.084 4.084 20 C -0.063 4.063 21 C -0.171 4.171 22 C -0.099 4.099 23 C -0.220 4.220 24 C 0.104 3.896 25 O -0.337 6.337 26 C 0.024 3.976 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.030 0.970 32 H 0.259 0.741 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 6.948 -9.691 13.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C 0.081 3.919 4 H -0.002 1.002 5 C -0.544 4.544 6 H 0.093 0.907 7 C -0.181 4.181 8 N -0.588 5.588 9 Si 0.762 3.238 10 H -0.197 1.197 11 H -0.235 1.235 12 H -0.180 1.180 13 N -0.238 5.238 14 C -0.100 4.100 15 C -0.172 4.172 16 C -0.150 4.150 17 C 0.030 3.970 18 H 0.046 0.954 19 C -0.085 4.085 20 C -0.081 4.081 21 C -0.189 4.189 22 C -0.117 4.117 23 C -0.239 4.239 24 C 0.059 3.941 25 O -0.251 6.251 26 C -0.071 4.071 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.602 6.609 -9.835 13.565 hybrid contribution 0.483 -0.048 1.959 2.018 sum -6.119 6.561 -7.876 11.939 Atomic orbital electron populations 1.22161 0.94863 1.01390 1.02595 1.21770 0.96193 0.97771 0.99918 1.19685 0.94091 0.91613 0.86490 1.00232 1.21777 0.91545 1.35818 1.05225 0.90663 1.25633 0.95588 0.96913 0.99976 1.70042 1.11123 1.48165 1.29445 0.86099 0.79835 0.79599 0.78254 1.19653 1.23457 1.17986 1.63286 1.04280 1.22101 1.34139 1.23328 0.89167 0.95730 1.01773 1.22822 0.97648 0.95734 1.00985 1.22691 0.94030 0.98385 0.99855 1.20856 0.91494 0.89345 0.95354 0.95428 1.19090 0.94842 0.95325 0.99242 1.20932 0.98545 0.95064 0.93572 1.21309 0.94198 1.01041 1.02390 1.21131 0.98940 0.93684 0.97955 1.21337 0.97885 1.02645 1.02031 1.19073 0.94840 0.88888 0.91284 1.86027 1.41882 1.36464 1.60690 1.23205 0.87276 0.93145 1.03454 0.93728 0.89766 0.92442 0.92041 0.95197 0.93216 0.89244 0.92193 0.88265 0.92200 0.91008 0.90385 0.85021 0.84504 0.83760 0.84261 0.93646 0.90941 0.86797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 8.33 71.98 0.60 -4.39 16 2 C -0.12 -5.05 5.09 30.59 0.16 -4.90 16 3 C 0.19 8.93 1.14 44.17 0.05 8.98 16 4 H -0.02 -0.99 6.89 -2.39 -0.02 -1.01 16 5 C -0.51 -28.81 8.24 25.60 0.21 -28.60 16 6 H 0.08 4.63 4.60 -2.91 -0.01 4.62 16 7 C 0.02 0.91 5.45 84.66 0.46 1.37 16 8 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 9 Si 0.93 46.84 24.42 68.60 1.68 48.52 16 10 H -0.27 -13.00 6.82 99.48 0.68 -12.32 16 11 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 12 H -0.26 -12.11 6.53 99.48 0.65 -11.46 16 13 N -0.51 -20.47 3.45 -844.28 -2.91 -23.38 16 14 C 0.03 0.84 4.86 86.65 0.42 1.26 16 15 C -0.13 -3.58 6.94 31.82 0.22 -3.35 16 16 C -0.11 -3.46 6.50 32.02 0.21 -3.26 16 17 C 0.14 5.61 1.80 44.64 0.08 5.69 16 18 H 0.03 1.36 7.03 -2.39 -0.02 1.34 16 19 C -0.08 -3.50 2.75 -19.77 -0.05 -3.55 16 20 C -0.06 -2.48 8.93 22.25 0.20 -2.28 16 21 C -0.17 -5.98 10.04 22.28 0.22 -5.76 16 22 C -0.10 -3.28 10.04 22.26 0.22 -3.06 16 23 C -0.22 -7.82 9.04 22.37 0.20 -7.62 16 24 C 0.10 4.24 6.59 22.51 0.15 4.39 16 25 O -0.34 -13.12 9.65 -92.36 -0.89 -14.01 16 26 C 0.02 0.66 9.81 113.37 1.11 1.77 16 27 H 0.04 1.44 7.36 -2.38 -0.02 1.42 16 28 H 0.08 2.40 5.27 -2.39 -0.01 2.39 16 29 H 0.06 1.64 8.14 -2.38 -0.02 1.63 16 30 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.03 1.38 3.21 -2.39 -0.01 1.37 16 32 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.09 2.39 7.43 -2.38 -0.02 2.37 16 34 H 0.06 1.87 4.95 -2.39 -0.01 1.86 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.08 2.28 8.05 -2.39 -0.02 2.26 16 39 H 0.13 5.14 7.26 -2.91 -0.02 5.12 16 40 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 42 H 0.14 4.12 6.30 -2.91 -0.02 4.10 16 43 H 0.04 1.31 7.66 -2.39 -0.02 1.30 16 44 H 0.07 1.62 7.66 -2.39 -0.02 1.60 16 45 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -70.53 334.42 3.53 -67.01 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.89 Total: 25.26 kcal Atomic # 6 Polarization: -47.76 SS G_CDS: 4.46 Total: -43.30 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -2.61 Total: -83.48 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.89 Total: -14.01 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.68 Total: 48.52 kcal Total: -70.53 3.53 -67.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.454 kcal (2) G-P(sol) polarization free energy of solvation -70.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds