Wall clock time and date at job start Tue Mar 31 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47294 * 2 1 4 4 H 1.08997 * 109.46751 * 305.00134 * 3 2 1 5 5 C 1.50705 * 109.46903 * 185.00213 * 3 2 1 6 6 H 1.08000 * 119.99479 * 239.99656 * 5 3 2 7 7 C 1.37872 * 119.99925 * 60.00329 * 5 3 2 8 8 N 1.31514 * 120.00141 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47050 * 89.99627 * 9 7 5 11 11 H 1.48497 * 109.47065 * 209.99871 * 9 7 5 12 12 H 1.48504 * 109.47080 * 329.99727 * 9 7 5 13 13 N 1.46895 * 109.47015 * 64.99989 * 3 2 1 14 14 C 1.46850 * 110.99917 * 66.04733 * 13 3 2 15 15 C 1.53033 * 109.52452 * 185.83895 * 14 13 3 16 16 C 1.53122 * 109.27945 * 300.81916 * 15 14 13 17 17 C 1.53126 * 109.15724 * 57.65401 * 16 15 14 18 18 H 1.08995 * 109.50116 * 62.29177 * 17 16 15 19 19 O 1.42902 * 109.49940 * 182.36637 * 17 16 15 20 20 C 1.35901 * 117.00177 * 275.27035 * 19 17 16 21 21 C 1.38728 * 120.05105 * 5.08948 * 20 19 17 22 22 C 1.38154 * 119.93802 * 179.74146 * 21 20 19 23 23 C 1.38257 * 120.05640 * 0.51064 * 22 21 20 24 24 C 1.38269 * 120.11334 * 359.76554 * 23 22 21 25 25 C 1.38142 * 120.05433 * 359.97438 * 24 23 22 26 26 C 1.46845 * 111.00052 * 190.25267 * 13 3 2 27 27 H 1.09001 * 109.47462 * 59.99611 * 1 2 3 28 28 H 1.09004 * 109.46811 * 300.00205 * 1 2 3 29 29 H 1.08997 * 109.47399 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46989 * 120.00626 * 2 1 3 31 31 H 1.09004 * 109.46811 * 239.99795 * 2 1 3 32 32 H 0.96999 * 119.99948 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46396 * 305.85268 * 14 13 3 34 34 H 1.08996 * 109.46504 * 65.83131 * 14 13 3 35 35 H 1.09000 * 109.50512 * 60.75763 * 15 14 13 36 36 H 1.09003 * 109.50567 * 180.83782 * 15 14 13 37 37 H 1.09000 * 109.52633 * 177.55840 * 16 15 14 38 38 H 1.08998 * 109.52214 * 297.69125 * 16 15 14 39 39 H 1.08002 * 120.03230 * 359.97438 * 21 20 19 40 40 H 1.08004 * 119.96709 * 180.27174 * 22 21 20 41 41 H 1.07998 * 119.94705 * 179.74428 * 23 22 21 42 42 H 1.08001 * 119.97233 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.02932 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.46623 * 294.17959 * 26 13 3 45 45 H 1.09000 * 109.45980 * 54.15080 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1432 0.8783 -1.2281 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8811 -1.3820 10 1 6.5548 -0.3504 -0.7604 11 1 6.3828 0.9223 -2.8174 12 1 6.5570 2.0736 -0.6903 13 7 1.6514 2.0992 1.2552 14 6 2.3339 1.4874 2.4025 15 6 1.7982 2.0960 3.7004 16 6 2.0388 3.6081 3.6867 17 6 1.3583 4.2141 2.4560 18 1 0.2826 4.0497 2.5171 19 8 1.6245 5.6172 2.4062 20 6 0.8074 6.4263 3.1305 21 6 -0.1617 5.8753 3.9563 22 6 -0.9875 6.6999 4.6956 23 6 -0.8558 8.0732 4.6051 24 6 0.1055 8.6249 3.7784 25 6 0.9374 7.8046 3.0412 26 6 1.9069 3.5440 1.1942 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.8292 -0.0618 -2.9496 33 1 2.1514 0.4127 2.4029 34 1 3.4054 1.6736 2.3294 35 1 0.7293 1.8983 3.7810 36 1 2.3155 1.6523 4.5511 37 1 1.6199 4.0518 4.5899 38 1 3.1098 3.8062 3.6464 39 1 -0.2680 4.8027 4.0239 40 1 -1.7393 6.2714 5.3420 41 1 -1.5050 8.7162 5.1807 42 1 0.2062 9.6979 3.7091 43 1 1.6884 8.2359 2.3959 44 1 2.9803 3.7206 1.1266 45 1 1.4141 3.9632 0.3170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:26 Heat of formation + Delta-G solvation = -17.079489 kcal Electronic energy + Delta-G solvation = -23650.607943 eV Core-core repulsion = 20439.855933 eV Total energy + Delta-G solvation = -3210.752010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28638 -38.45994 -36.97991 -34.34167 -31.90501 -31.06221 -30.83206 -30.20107 -28.90616 -26.58723 -23.98490 -23.47503 -22.56685 -22.07779 -21.62206 -19.67254 -19.05971 -18.05721 -16.34146 -16.15581 -15.72822 -15.32249 -14.90310 -14.64156 -14.44100 -14.02846 -13.57171 -13.44915 -13.25942 -13.01195 -12.83551 -12.70104 -12.24260 -11.99688 -11.68798 -11.59329 -11.29532 -11.21380 -11.14980 -10.94754 -10.76279 -10.50429 -10.39210 -10.27910 -10.09646 -9.75953 -9.65784 -9.43221 -9.11666 -9.02089 -8.38791 -8.11772 -7.21062 -6.01833 -4.15095 1.31342 1.45622 3.25280 3.31091 3.33011 3.36111 3.78736 4.37837 4.80957 4.87286 4.96007 5.03979 5.07335 5.21221 5.24348 5.31774 5.34695 5.45476 5.59167 5.62249 5.79949 5.93938 5.98640 6.15515 6.16784 6.25260 6.27925 6.37120 6.40553 6.43872 6.44614 6.49269 6.57598 6.63757 6.70383 6.80697 6.82628 7.08617 7.15367 7.30779 7.54259 7.63425 7.73768 7.91552 8.10512 8.24655 8.42241 8.93806 9.52740 10.97751 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.004043 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.319731 B = 6923.731039 C = 7462.142513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.216 3.784 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.529 5.529 14 C 0.056 3.944 15 C -0.114 4.114 16 C -0.141 4.141 17 C 0.089 3.911 18 H 0.077 0.923 19 O -0.310 6.310 20 C 0.143 3.857 21 C -0.211 4.211 22 C -0.081 4.081 23 C -0.169 4.169 24 C -0.083 4.083 25 C -0.160 4.160 26 C 0.072 3.928 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.025 0.975 30 H 0.033 0.967 31 H 0.093 0.907 32 H 0.261 0.739 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.047 0.953 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 9.624 12.130 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.111 3.889 4 H 0.057 0.943 5 C -0.584 4.584 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.254 5.254 14 C -0.072 4.072 15 C -0.152 4.152 16 C -0.179 4.179 17 C 0.033 3.967 18 H 0.095 0.905 19 O -0.223 6.223 20 C 0.096 3.904 21 C -0.229 4.229 22 C -0.100 4.100 23 C -0.187 4.187 24 C -0.101 4.101 25 C -0.178 4.178 26 C -0.057 4.057 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.150 0.850 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.065 0.935 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.411 9.503 11.867 16.913 hybrid contribution 1.847 -0.055 -0.159 1.855 sum -5.563 9.448 11.708 16.040 Atomic orbital electron populations 1.21713 0.98835 0.98465 1.00571 1.21603 0.92258 0.98948 1.02028 1.19281 0.93234 0.91200 0.85228 0.94272 1.21729 0.92752 1.38314 1.05620 0.92479 1.24892 0.97839 0.94974 0.95604 1.69868 1.34817 1.38162 1.09431 0.86681 0.86178 0.78395 0.77284 1.20683 1.21167 1.20037 1.62323 1.57218 1.00415 1.05481 1.21985 0.96943 0.99086 0.89177 1.21600 1.01538 0.93704 0.98381 1.22121 1.01654 0.96908 0.97179 1.22601 1.00232 0.76611 0.97271 0.90545 1.86104 1.52272 1.18927 1.64948 1.19109 0.89706 0.90756 0.90793 1.21415 0.99242 1.00937 1.01352 1.20942 0.97832 0.93493 0.97688 1.20996 1.00693 0.95062 1.01972 1.20924 0.94548 0.99367 0.95304 1.20485 1.03024 0.90472 1.03843 1.21720 0.99856 0.89943 0.94188 0.94218 0.93406 0.95566 0.94815 0.88857 0.92851 0.90727 0.94059 0.91736 0.91913 0.92170 0.91301 0.85032 0.86084 0.86299 0.85722 0.85354 0.93490 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.80 37.16 0.36 -2.37 16 2 C -0.11 -2.52 5.17 -26.73 -0.14 -2.66 16 3 C 0.22 5.16 1.70 -68.86 -0.12 5.04 16 4 H 0.04 1.05 7.98 -51.93 -0.41 0.63 16 5 C -0.55 -14.21 7.23 -34.44 -0.25 -14.46 16 6 H 0.06 1.51 5.84 -52.49 -0.31 1.20 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.43 11.29 55.43 0.63 -23.80 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.53 -10.67 4.06 -228.08 -0.93 -11.59 16 14 C 0.06 1.05 4.78 -3.83 -0.02 1.03 16 15 C -0.11 -1.69 6.09 -26.65 -0.16 -1.85 16 16 C -0.14 -2.08 5.28 -26.60 -0.14 -2.22 16 17 C 0.09 1.44 2.27 -26.65 -0.06 1.38 16 18 H 0.08 1.20 6.31 -51.93 -0.33 0.87 16 19 O -0.31 -5.10 9.81 -19.43 -0.19 -5.29 16 20 C 0.14 2.06 6.60 -39.22 -0.26 1.80 16 21 C -0.21 -2.72 8.26 -39.43 -0.33 -3.05 16 22 C -0.08 -0.90 10.04 -39.61 -0.40 -1.29 16 23 C -0.17 -1.74 10.04 -39.56 -0.40 -2.13 16 24 C -0.08 -0.89 10.04 -39.60 -0.40 -1.29 16 25 C -0.16 -2.04 9.99 -39.43 -0.39 -2.44 16 26 C 0.07 1.39 4.84 -3.83 -0.02 1.37 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.90 7.75 -51.93 -0.40 0.50 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.03 0.75 6.23 -51.93 -0.32 0.43 16 31 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.07 1.42 6.13 -51.93 -0.32 1.10 16 34 H 0.04 0.85 6.36 -51.93 -0.33 0.52 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.80 6.89 -51.93 -0.36 0.44 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.13 1.64 5.40 -52.49 -0.28 1.36 16 40 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 44 H 0.05 1.00 7.31 -51.93 -0.38 0.62 16 45 H 0.07 1.44 8.01 -51.93 -0.42 1.03 16 LS Contribution 344.89 15.07 5.20 5.20 Total: -1.00 -27.22 344.89 -10.23 -37.45 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.11 Total: 3.52 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -2.81 Total: -21.38 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.30 Total: -35.39 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.19 Total: -5.29 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.22 -10.23 -37.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.370 kcal (2) G-P(sol) polarization free energy of solvation -27.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds