Wall clock time and date at job start Tue Mar 31 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47294 * 2 1 4 4 H 1.08997 * 109.46751 * 305.00134 * 3 2 1 5 5 C 1.50705 * 109.46903 * 185.00213 * 3 2 1 6 6 H 1.08000 * 119.99479 * 239.99656 * 5 3 2 7 7 C 1.37872 * 119.99925 * 60.00329 * 5 3 2 8 8 N 1.31514 * 120.00141 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47050 * 89.99627 * 9 7 5 11 11 H 1.48497 * 109.47065 * 209.99871 * 9 7 5 12 12 H 1.48504 * 109.47080 * 329.99727 * 9 7 5 13 13 N 1.46895 * 109.47015 * 64.99989 * 3 2 1 14 14 C 1.46850 * 110.99917 * 66.04733 * 13 3 2 15 15 C 1.53033 * 109.52452 * 185.83895 * 14 13 3 16 16 C 1.53122 * 109.27945 * 300.81916 * 15 14 13 17 17 C 1.53126 * 109.15724 * 57.65401 * 16 15 14 18 18 H 1.08995 * 109.50116 * 62.29177 * 17 16 15 19 19 O 1.42902 * 109.49940 * 182.36637 * 17 16 15 20 20 C 1.35901 * 117.00177 * 275.27035 * 19 17 16 21 21 C 1.38728 * 120.05105 * 5.08948 * 20 19 17 22 22 C 1.38154 * 119.93802 * 179.74146 * 21 20 19 23 23 C 1.38257 * 120.05640 * 0.51064 * 22 21 20 24 24 C 1.38269 * 120.11334 * 359.76554 * 23 22 21 25 25 C 1.38142 * 120.05433 * 359.97438 * 24 23 22 26 26 C 1.46845 * 111.00052 * 190.25267 * 13 3 2 27 27 H 1.09001 * 109.47462 * 59.99611 * 1 2 3 28 28 H 1.09004 * 109.46811 * 300.00205 * 1 2 3 29 29 H 1.08997 * 109.47399 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46989 * 120.00626 * 2 1 3 31 31 H 1.09004 * 109.46811 * 239.99795 * 2 1 3 32 32 H 0.96999 * 119.99948 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46396 * 305.85268 * 14 13 3 34 34 H 1.08996 * 109.46504 * 65.83131 * 14 13 3 35 35 H 1.09000 * 109.50512 * 60.75763 * 15 14 13 36 36 H 1.09003 * 109.50567 * 180.83782 * 15 14 13 37 37 H 1.09000 * 109.52633 * 177.55840 * 16 15 14 38 38 H 1.08998 * 109.52214 * 297.69125 * 16 15 14 39 39 H 1.08002 * 120.03230 * 359.97438 * 21 20 19 40 40 H 1.08004 * 119.96709 * 180.27174 * 22 21 20 41 41 H 1.07998 * 119.94705 * 179.74428 * 23 22 21 42 42 H 1.08001 * 119.97233 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.02932 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.46623 * 294.17959 * 26 13 3 45 45 H 1.09000 * 109.45980 * 54.15080 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1432 0.8783 -1.2281 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8811 -1.3820 10 1 6.5548 -0.3504 -0.7604 11 1 6.3828 0.9223 -2.8174 12 1 6.5570 2.0736 -0.6903 13 7 1.6514 2.0992 1.2552 14 6 2.3339 1.4874 2.4025 15 6 1.7982 2.0960 3.7004 16 6 2.0388 3.6081 3.6867 17 6 1.3583 4.2141 2.4560 18 1 0.2826 4.0497 2.5171 19 8 1.6245 5.6172 2.4062 20 6 0.8074 6.4263 3.1305 21 6 -0.1617 5.8753 3.9563 22 6 -0.9875 6.6999 4.6956 23 6 -0.8558 8.0732 4.6051 24 6 0.1055 8.6249 3.7784 25 6 0.9374 7.8046 3.0412 26 6 1.9069 3.5440 1.1942 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.8292 -0.0618 -2.9496 33 1 2.1514 0.4127 2.4029 34 1 3.4054 1.6736 2.3294 35 1 0.7293 1.8983 3.7810 36 1 2.3155 1.6523 4.5511 37 1 1.6199 4.0518 4.5899 38 1 3.1098 3.8062 3.6464 39 1 -0.2680 4.8027 4.0239 40 1 -1.7393 6.2714 5.3420 41 1 -1.5050 8.7162 5.1807 42 1 0.2062 9.6979 3.7091 43 1 1.6884 8.2359 2.3959 44 1 2.9803 3.7206 1.1266 45 1 1.4141 3.9632 0.3170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:25 Heat of formation + Delta-G solvation = -30.882353 kcal Electronic energy + Delta-G solvation = -23651.206480 eV Core-core repulsion = 20439.855933 eV Total energy + Delta-G solvation = -3211.350547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42470 -39.81612 -38.19382 -35.97121 -33.79819 -32.42243 -31.99848 -31.34879 -30.08405 -28.47616 -25.70305 -24.70391 -23.96776 -23.26581 -22.78392 -21.15494 -20.71021 -19.19255 -18.21908 -17.49047 -16.79553 -16.67826 -16.34095 -16.08224 -15.73142 -15.30886 -15.13014 -14.89047 -14.51613 -14.30948 -14.13944 -14.07672 -13.62312 -13.50678 -13.19562 -13.11679 -12.80072 -12.69864 -12.51767 -12.40391 -12.31020 -12.14670 -11.80640 -11.71599 -11.56067 -11.52673 -11.26644 -11.10143 -10.92611 -10.43970 -9.90151 -9.11153 -9.00000 -8.05688 -6.27516 0.43685 0.54133 1.34750 1.37194 1.45402 2.13170 2.38393 2.89614 3.13566 3.45729 3.73041 3.81213 3.98150 4.01036 4.06817 4.22082 4.30542 4.36534 4.52710 4.56411 4.58771 4.59904 4.72522 4.75640 4.85709 4.91609 4.93139 4.93915 5.00513 5.03123 5.13478 5.15429 5.29248 5.38910 5.43503 5.46717 5.50347 5.53380 5.62700 5.63993 5.78485 5.93917 6.05417 6.15802 6.34040 6.50859 6.62993 6.91924 7.43144 8.89894 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.004043 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.319731 B = 6923.731039 C = 7462.142513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.221 3.779 4 H 0.002 0.998 5 C -0.553 4.553 6 H 0.048 0.952 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.277 1.277 13 N -0.520 5.520 14 C 0.057 3.943 15 C -0.103 4.103 16 C -0.133 4.133 17 C 0.102 3.898 18 H 0.086 0.914 19 O -0.333 6.333 20 C 0.110 3.890 21 C -0.220 4.220 22 C -0.084 4.084 23 C -0.164 4.164 24 C -0.082 4.082 25 C -0.177 4.177 26 C 0.075 3.925 27 H 0.030 0.970 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.262 0.738 33 H 0.071 0.929 34 H 0.016 0.984 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.134 0.866 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.127 0.873 44 H 0.018 0.982 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.416 10.488 14.748 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.114 3.886 4 H 0.020 0.980 5 C -0.593 4.593 6 H 0.066 0.934 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.244 5.244 14 C -0.072 4.072 15 C -0.141 4.141 16 C -0.171 4.171 17 C 0.046 3.954 18 H 0.103 0.897 19 O -0.247 6.247 20 C 0.064 3.936 21 C -0.239 4.239 22 C -0.102 4.102 23 C -0.182 4.182 24 C -0.100 4.100 25 C -0.195 4.195 26 C -0.054 4.054 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.034 0.966 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.152 0.848 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.171 0.829 43 H 0.145 0.855 44 H 0.036 0.964 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.741 10.376 14.504 19.860 hybrid contribution 2.213 -0.203 -0.953 2.418 sum -6.528 10.173 13.551 18.158 Atomic orbital electron populations 1.21577 0.96189 0.99921 1.00692 1.21431 0.94569 0.97637 1.00588 1.19061 0.91845 0.91785 0.85877 0.97978 1.21962 0.94099 1.37817 1.05374 0.93402 1.25561 1.01619 0.94925 0.95492 1.69990 1.36179 1.38817 1.09778 0.85786 0.81691 0.78333 0.77204 1.19928 1.20827 1.20239 1.62285 1.56903 1.00669 1.04590 1.22041 0.95566 0.99148 0.90403 1.21546 1.02558 0.93337 0.96635 1.22065 1.00758 0.96933 0.97349 1.22334 1.00427 0.76944 0.95732 0.89667 1.86047 1.53481 1.18873 1.66279 1.19418 0.90849 0.91139 0.92149 1.21534 0.99334 1.01433 1.01553 1.21316 0.97700 0.93844 0.97308 1.21437 1.00261 0.95291 1.01179 1.21293 0.93736 1.00622 0.94361 1.20719 1.03873 0.90289 1.04663 1.21647 0.98029 0.89843 0.95912 0.95083 0.92209 0.93404 0.94509 0.91902 0.92873 0.91066 0.96566 0.90168 0.89353 0.89747 0.92699 0.84801 0.83409 0.83187 0.82942 0.85542 0.96398 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 9.80 71.98 0.71 -4.23 16 2 C -0.10 -4.85 5.17 30.59 0.16 -4.69 16 3 C 0.22 10.99 1.70 44.17 0.08 11.06 16 4 H 0.00 0.13 7.98 -2.39 -0.02 0.11 16 5 C -0.55 -30.03 7.23 25.60 0.19 -29.84 16 6 H 0.05 2.64 5.84 -2.91 -0.02 2.62 16 7 C 0.02 1.33 5.29 84.65 0.45 1.78 16 8 N -0.91 -51.76 11.29 21.45 0.24 -51.52 16 9 Si 0.94 43.92 29.54 68.60 2.03 45.95 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.52 -21.47 4.06 -875.52 -3.55 -25.03 16 14 C 0.06 2.10 4.78 86.32 0.41 2.51 16 15 C -0.10 -2.83 6.09 30.65 0.19 -2.65 16 16 C -0.13 -3.78 5.28 30.68 0.16 -3.61 16 17 C 0.10 3.30 2.27 30.65 0.07 3.37 16 18 H 0.09 2.60 6.31 -2.39 -0.02 2.58 16 19 O -0.33 -11.20 9.81 -92.44 -0.91 -12.11 16 20 C 0.11 3.11 6.60 22.50 0.15 3.26 16 21 C -0.22 -5.27 8.26 22.37 0.18 -5.08 16 22 C -0.08 -1.57 10.04 22.25 0.22 -1.34 16 23 C -0.16 -2.76 10.04 22.28 0.22 -2.53 16 24 C -0.08 -1.54 10.04 22.25 0.22 -1.32 16 25 C -0.18 -4.39 9.99 22.36 0.22 -4.17 16 26 C 0.07 3.03 4.84 86.33 0.42 3.45 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 2.17 7.75 -2.38 -0.02 2.15 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.04 1.66 6.23 -2.39 -0.01 1.64 16 31 H 0.06 3.34 5.95 -2.38 -0.01 3.33 16 32 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.07 2.68 6.13 -2.39 -0.01 2.66 16 34 H 0.02 0.68 6.36 -2.39 -0.02 0.66 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 37 H 0.08 2.02 6.89 -2.39 -0.02 2.01 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.13 3.04 5.40 -2.91 -0.02 3.02 16 40 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 41 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 43 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 44 H 0.02 0.81 7.31 -2.39 -0.02 0.80 16 45 H 0.05 2.36 8.01 -2.39 -0.02 2.35 16 Total: -1.00 -61.29 344.89 2.82 -58.47 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.96 Total: 18.26 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 4.05 Total: -34.03 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -3.31 Total: -76.54 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.91 Total: -12.11 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -61.29 2.82 -58.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.589 kcal (2) G-P(sol) polarization free energy of solvation -61.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds