Wall clock time and date at job start Tue Mar 31 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47400 * 2 1 4 4 H 1.08992 * 109.47277 * 57.20934 * 3 2 1 5 5 C 1.50697 * 109.46963 * 177.21370 * 3 2 1 6 6 H 1.08003 * 120.00205 * 120.00330 * 5 3 2 7 7 C 1.37880 * 119.99951 * 299.99523 * 5 3 2 8 8 N 1.31513 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99857 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47674 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46904 * 120.00486 * 9 7 5 12 12 H 1.48502 * 109.47340 * 240.00223 * 9 7 5 13 13 N 1.46903 * 109.47104 * 297.21042 * 3 2 1 14 14 C 1.46845 * 110.99955 * 174.64557 * 13 3 2 15 15 C 1.53042 * 109.52056 * 185.84311 * 14 13 3 16 16 C 1.53128 * 109.30845 * 300.83618 * 15 14 13 17 17 C 1.53116 * 109.15455 * 57.60079 * 16 15 14 18 18 H 1.08995 * 109.50633 * 62.36366 * 17 16 15 19 19 O 1.42904 * 109.50015 * 182.44351 * 17 16 15 20 20 C 1.35894 * 116.99798 * 276.15205 * 19 17 16 21 21 C 1.38732 * 120.05843 * 357.62443 * 20 19 17 22 22 C 1.38146 * 119.94772 * 180.29163 * 21 20 19 23 23 C 1.38271 * 120.05439 * 359.95768 * 22 21 20 24 24 C 1.38272 * 120.10979 * 0.03975 * 23 22 21 25 25 C 1.38141 * 120.05628 * 359.97438 * 24 23 22 26 26 C 1.46851 * 110.99922 * 298.85708 * 13 3 2 27 27 H 1.09005 * 109.46578 * 305.04916 * 1 2 3 28 28 H 1.08993 * 109.47197 * 65.04387 * 1 2 3 29 29 H 1.09000 * 109.47262 * 185.04999 * 1 2 3 30 30 H 1.09003 * 109.46619 * 239.99925 * 2 1 3 31 31 H 1.08997 * 109.46985 * 120.00101 * 2 1 3 32 32 H 0.97004 * 119.99550 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.45812 * 305.85396 * 14 13 3 34 34 H 1.08995 * 109.46129 * 65.83610 * 14 13 3 35 35 H 1.08998 * 109.50655 * 60.76003 * 15 14 13 36 36 H 1.09003 * 109.49976 * 180.83974 * 15 14 13 37 37 H 1.08997 * 109.49179 * 297.71707 * 16 15 14 38 38 H 1.08992 * 109.55259 * 177.52207 * 16 15 14 39 39 H 1.08003 * 120.02417 * 0.24800 * 21 20 19 40 40 H 1.07995 * 119.97512 * 179.97438 * 22 21 20 41 41 H 1.07995 * 119.94689 * 180.02562 * 23 22 21 42 42 H 1.07997 * 119.97087 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.03144 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.46538 * 54.14111 * 26 13 3 45 45 H 1.09001 * 109.45106 * 294.16957 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6366 1.9705 0.8638 5 6 3.5455 1.4429 0.0691 6 1 4.1223 1.8976 -0.7228 7 6 4.1865 0.8630 1.1433 8 7 3.4841 0.3090 2.1073 9 14 6.0525 0.8642 1.2292 10 1 6.6029 1.5455 0.0300 11 1 6.4912 1.5839 2.4519 12 1 6.5469 -0.5354 1.2744 13 7 1.6063 2.1152 -1.2317 14 6 1.9687 3.5381 -1.2099 15 6 1.3762 4.2357 -2.4364 16 6 1.9158 3.5718 -3.7064 17 6 1.5676 2.0810 -3.6808 18 1 0.4844 1.9602 -3.6791 19 8 2.1171 1.4429 -4.8354 20 6 1.3890 1.5073 -5.9810 21 6 0.1483 2.1283 -5.9819 22 6 -0.5925 2.1872 -7.1464 23 6 -0.0982 1.6288 -8.3107 24 6 1.1381 1.0094 -8.3125 25 6 1.8827 0.9476 -7.1505 26 6 2.1546 1.4457 -2.4182 27 1 -0.3633 0.5902 0.8414 28 1 -0.3633 0.4336 -0.9316 29 1 -0.3634 -1.0237 0.0905 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9351 -0.0993 2.8629 33 1 1.5749 3.9992 -0.3042 34 1 3.0541 3.6366 -1.2251 35 1 0.2899 4.1494 -2.4148 36 1 1.6580 5.2886 -2.4277 37 1 2.9983 3.6924 -3.7480 38 1 1.4626 4.0367 -4.5818 39 1 -0.2382 2.5646 -5.0727 40 1 -1.5585 2.6701 -7.1475 41 1 -0.6786 1.6762 -9.2202 42 1 1.5219 0.5736 -9.2230 43 1 2.8484 0.4641 -7.1525 44 1 1.8957 0.3873 -2.3901 45 1 3.2391 1.5543 -2.4275 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:28 Heat of formation + Delta-G solvation = -16.486298 kcal Electronic energy + Delta-G solvation = -23779.368806 eV Core-core repulsion = 20568.642519 eV Total energy + Delta-G solvation = -3210.726287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.27566 -38.46605 -36.94140 -34.41066 -31.92903 -31.13681 -30.46657 -30.32420 -28.95966 -26.60022 -23.97692 -23.48856 -22.55298 -22.37383 -21.26342 -19.68658 -19.04255 -18.05366 -16.34935 -16.30088 -15.76481 -15.18105 -14.92240 -14.56834 -14.35097 -14.19914 -13.52774 -13.38336 -13.20334 -13.00983 -12.85682 -12.69796 -12.44973 -11.81713 -11.64796 -11.59402 -11.39326 -11.21390 -11.14913 -10.92381 -10.68980 -10.54388 -10.38010 -10.17611 -10.16126 -9.88230 -9.69765 -9.31353 -9.11659 -9.01441 -8.39647 -8.09795 -7.21443 -6.02023 -4.15123 1.32453 1.47032 3.24552 3.33365 3.33603 3.37154 3.79547 4.37940 4.82353 4.88128 4.95273 5.04718 5.08071 5.21149 5.25597 5.31187 5.35594 5.46707 5.58857 5.65583 5.79975 5.94415 5.99489 6.14530 6.16519 6.25268 6.27200 6.38011 6.41656 6.42504 6.47242 6.50307 6.58281 6.65496 6.68332 6.79091 6.83581 7.07087 7.15705 7.28245 7.56617 7.63257 7.74420 7.90831 8.10602 8.26095 8.40552 8.93879 9.52770 10.97515 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.004156 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.957575 B = 6736.109361 C = 6959.909761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 C 0.217 3.783 4 H 0.042 0.958 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.529 5.529 14 C 0.059 3.941 15 C -0.112 4.112 16 C -0.140 4.140 17 C 0.086 3.914 18 H 0.077 0.923 19 O -0.309 6.309 20 C 0.144 3.856 21 C -0.212 4.212 22 C -0.081 4.081 23 C -0.170 4.170 24 C -0.083 4.083 25 C -0.160 4.160 26 C 0.069 3.931 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.025 0.975 30 H 0.034 0.966 31 H 0.093 0.907 32 H 0.261 0.739 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.080 0.920 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 4.026 -15.196 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.060 0.940 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.254 5.254 14 C -0.070 4.070 15 C -0.150 4.150 16 C -0.178 4.178 17 C 0.030 3.970 18 H 0.094 0.906 19 O -0.222 6.222 20 C 0.097 3.903 21 C -0.230 4.230 22 C -0.099 4.099 23 C -0.188 4.188 24 C -0.101 4.101 25 C -0.179 4.179 26 C -0.060 4.060 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.150 0.850 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.994 3.808 -14.983 16.968 hybrid contribution 1.818 0.128 0.222 1.836 sum -5.176 3.936 -14.761 16.130 Atomic orbital electron populations 1.21698 0.98781 0.98450 1.00499 1.21653 0.92255 0.99148 1.02192 1.19295 0.92877 0.90991 0.85749 0.93974 1.21759 0.92632 1.37608 1.06341 0.92494 1.24892 0.97962 0.94945 0.95513 1.69880 1.34905 1.37666 1.09834 0.86629 0.86214 0.77787 0.77930 1.19929 1.21016 1.20956 1.62344 1.58587 1.01344 1.03168 1.21914 0.98614 0.89904 0.96570 1.21572 1.00791 0.98486 0.94199 1.22095 1.02069 0.95083 0.98536 1.22649 0.98564 0.91883 0.83885 0.90561 1.86116 1.46614 1.72523 1.16914 1.19112 0.90214 0.94079 0.86875 1.21394 0.95643 1.06017 0.99993 1.20937 0.99006 0.97696 0.92247 1.20995 0.97101 1.02374 0.98330 1.20920 0.94269 0.97786 0.97132 1.20478 1.01851 1.04771 0.90799 1.21791 0.98207 0.98715 0.87248 0.94076 0.93683 0.95547 0.94712 0.88842 0.92913 0.91355 0.94229 0.91677 0.91870 0.91328 0.92229 0.85030 0.86095 0.86313 0.85741 0.85378 0.90212 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.72 37.16 0.36 -2.36 16 2 C -0.11 -2.64 5.00 -26.73 -0.13 -2.78 16 3 C 0.22 5.16 1.77 -68.87 -0.12 5.03 16 4 H 0.04 1.11 8.07 -51.93 -0.42 0.69 16 5 C -0.54 -14.21 7.19 -34.44 -0.25 -14.45 16 6 H 0.06 1.51 5.84 -52.48 -0.31 1.21 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.41 11.30 55.43 0.63 -23.78 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.53 -10.66 4.09 -228.08 -0.93 -11.59 16 14 C 0.06 1.08 5.13 -3.83 -0.02 1.06 16 15 C -0.11 -1.65 6.09 -26.64 -0.16 -1.81 16 16 C -0.14 -2.08 5.36 -26.60 -0.14 -2.22 16 17 C 0.09 1.41 2.29 -26.65 -0.06 1.35 16 18 H 0.08 1.20 6.00 -51.93 -0.31 0.89 16 19 O -0.31 -5.16 9.81 -19.41 -0.19 -5.35 16 20 C 0.14 2.10 6.58 -39.21 -0.26 1.84 16 21 C -0.21 -2.77 8.37 -39.43 -0.33 -3.10 16 22 C -0.08 -0.90 10.04 -39.60 -0.40 -1.30 16 23 C -0.17 -1.76 10.04 -39.56 -0.40 -2.16 16 24 C -0.08 -0.89 10.04 -39.60 -0.40 -1.29 16 25 C -0.16 -2.07 9.99 -39.43 -0.39 -2.47 16 26 C 0.07 1.34 4.45 -3.83 -0.02 1.33 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.85 7.84 -51.93 -0.41 0.45 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.03 0.80 6.17 -51.93 -0.32 0.48 16 31 H 0.09 2.43 6.00 -51.93 -0.31 2.12 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 34 H 0.04 0.80 6.99 -51.93 -0.36 0.44 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.80 7.34 -51.93 -0.38 0.42 16 39 H 0.13 1.66 5.65 -52.48 -0.30 1.37 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.08 1.64 5.98 -51.93 -0.31 1.33 16 45 H 0.05 1.05 6.61 -51.93 -0.34 0.71 16 LS Contribution 345.21 15.07 5.20 5.20 Total: -1.00 -27.26 345.21 -10.26 -37.52 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.13 Total: 3.62 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.81 Total: -21.57 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.31 Total: -35.38 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.19 Total: -5.35 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.26 -10.26 -37.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.035 kcal (2) G-P(sol) polarization free energy of solvation -27.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds