Wall clock time and date at job start Tue Mar 31 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47400 * 2 1 4 4 H 1.08992 * 109.47277 * 57.20934 * 3 2 1 5 5 C 1.50697 * 109.46963 * 177.21370 * 3 2 1 6 6 H 1.08003 * 120.00205 * 120.00330 * 5 3 2 7 7 C 1.37880 * 119.99951 * 299.99523 * 5 3 2 8 8 N 1.31513 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99857 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47674 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46904 * 120.00486 * 9 7 5 12 12 H 1.48502 * 109.47340 * 240.00223 * 9 7 5 13 13 N 1.46903 * 109.47104 * 297.21042 * 3 2 1 14 14 C 1.46845 * 110.99955 * 174.64557 * 13 3 2 15 15 C 1.53042 * 109.52056 * 185.84311 * 14 13 3 16 16 C 1.53128 * 109.30845 * 300.83618 * 15 14 13 17 17 C 1.53116 * 109.15455 * 57.60079 * 16 15 14 18 18 H 1.08995 * 109.50633 * 62.36366 * 17 16 15 19 19 O 1.42904 * 109.50015 * 182.44351 * 17 16 15 20 20 C 1.35894 * 116.99798 * 276.15205 * 19 17 16 21 21 C 1.38732 * 120.05843 * 357.62443 * 20 19 17 22 22 C 1.38146 * 119.94772 * 180.29163 * 21 20 19 23 23 C 1.38271 * 120.05439 * 359.95768 * 22 21 20 24 24 C 1.38272 * 120.10979 * 0.03975 * 23 22 21 25 25 C 1.38141 * 120.05628 * 359.97438 * 24 23 22 26 26 C 1.46851 * 110.99922 * 298.85708 * 13 3 2 27 27 H 1.09005 * 109.46578 * 305.04916 * 1 2 3 28 28 H 1.08993 * 109.47197 * 65.04387 * 1 2 3 29 29 H 1.09000 * 109.47262 * 185.04999 * 1 2 3 30 30 H 1.09003 * 109.46619 * 239.99925 * 2 1 3 31 31 H 1.08997 * 109.46985 * 120.00101 * 2 1 3 32 32 H 0.97004 * 119.99550 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.45812 * 305.85396 * 14 13 3 34 34 H 1.08995 * 109.46129 * 65.83610 * 14 13 3 35 35 H 1.08998 * 109.50655 * 60.76003 * 15 14 13 36 36 H 1.09003 * 109.49976 * 180.83974 * 15 14 13 37 37 H 1.08997 * 109.49179 * 297.71707 * 16 15 14 38 38 H 1.08992 * 109.55259 * 177.52207 * 16 15 14 39 39 H 1.08003 * 120.02417 * 0.24800 * 21 20 19 40 40 H 1.07995 * 119.97512 * 179.97438 * 22 21 20 41 41 H 1.07995 * 119.94689 * 180.02562 * 23 22 21 42 42 H 1.07997 * 119.97087 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.03144 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.46538 * 54.14111 * 26 13 3 45 45 H 1.09001 * 109.45106 * 294.16957 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6366 1.9705 0.8638 5 6 3.5455 1.4429 0.0691 6 1 4.1223 1.8976 -0.7228 7 6 4.1865 0.8630 1.1433 8 7 3.4841 0.3090 2.1073 9 14 6.0525 0.8642 1.2292 10 1 6.6029 1.5455 0.0300 11 1 6.4912 1.5839 2.4519 12 1 6.5469 -0.5354 1.2744 13 7 1.6063 2.1152 -1.2317 14 6 1.9687 3.5381 -1.2099 15 6 1.3762 4.2357 -2.4364 16 6 1.9158 3.5718 -3.7064 17 6 1.5676 2.0810 -3.6808 18 1 0.4844 1.9602 -3.6791 19 8 2.1171 1.4429 -4.8354 20 6 1.3890 1.5073 -5.9810 21 6 0.1483 2.1283 -5.9819 22 6 -0.5925 2.1872 -7.1464 23 6 -0.0982 1.6288 -8.3107 24 6 1.1381 1.0094 -8.3125 25 6 1.8827 0.9476 -7.1505 26 6 2.1546 1.4457 -2.4182 27 1 -0.3633 0.5902 0.8414 28 1 -0.3633 0.4336 -0.9316 29 1 -0.3634 -1.0237 0.0905 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9351 -0.0993 2.8629 33 1 1.5749 3.9992 -0.3042 34 1 3.0541 3.6366 -1.2251 35 1 0.2899 4.1494 -2.4148 36 1 1.6580 5.2886 -2.4277 37 1 2.9983 3.6924 -3.7480 38 1 1.4626 4.0367 -4.5818 39 1 -0.2382 2.5646 -5.0727 40 1 -1.5585 2.6701 -7.1475 41 1 -0.6786 1.6762 -9.2202 42 1 1.5219 0.5736 -9.2230 43 1 2.8484 0.4641 -7.1525 44 1 1.8957 0.3873 -2.3901 45 1 3.2391 1.5543 -2.4275 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:27 Heat of formation + Delta-G solvation = -30.299371 kcal Electronic energy + Delta-G solvation = -23779.967786 eV Core-core repulsion = 20568.642519 eV Total energy + Delta-G solvation = -3211.325267 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42375 -39.82086 -38.15851 -36.03866 -33.85007 -32.31768 -31.84021 -31.47323 -30.11747 -28.49133 -25.70513 -24.69223 -24.12963 -23.36319 -22.44272 -21.23219 -20.68761 -19.19230 -18.27544 -17.63560 -16.76919 -16.60314 -16.31062 -16.00505 -15.75134 -15.38822 -15.10342 -14.71888 -14.64236 -14.35086 -14.14974 -14.05476 -13.76963 -13.35672 -13.20883 -13.11086 -12.86655 -12.64468 -12.51972 -12.45482 -12.27864 -12.11688 -11.83520 -11.65646 -11.61923 -11.51831 -11.41874 -11.04008 -10.88223 -10.45587 -9.90018 -9.09824 -9.00485 -8.06142 -6.27589 0.44150 0.55035 1.33072 1.36819 1.45852 2.14930 2.37927 2.89821 3.12908 3.45892 3.75241 3.81505 3.97120 4.01489 4.07209 4.22244 4.30803 4.38726 4.51771 4.53484 4.58432 4.63969 4.72157 4.72960 4.85306 4.91224 4.92467 4.93746 5.00900 5.04227 5.13928 5.16642 5.25515 5.37482 5.42275 5.46942 5.47534 5.53889 5.61114 5.64470 5.77117 5.93437 6.02444 6.15706 6.34893 6.51532 6.62703 6.91530 7.42891 8.89457 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.004156 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.957575 B = 6736.109361 C = 6959.909761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.109 4.109 3 C 0.222 3.778 4 H 0.014 0.986 5 C -0.552 4.552 6 H 0.045 0.955 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.942 3.058 10 H -0.276 1.276 11 H -0.278 1.278 12 H -0.280 1.280 13 N -0.520 5.520 14 C 0.056 3.944 15 C -0.100 4.100 16 C -0.133 4.133 17 C 0.098 3.902 18 H 0.086 0.914 19 O -0.332 6.332 20 C 0.111 3.889 21 C -0.221 4.221 22 C -0.083 4.083 23 C -0.164 4.164 24 C -0.082 4.082 25 C -0.177 4.177 26 C 0.076 3.924 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.028 0.972 31 H 0.064 0.936 32 H 0.262 0.738 33 H 0.065 0.935 34 H 0.015 0.985 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.126 0.874 44 H 0.064 0.936 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.165 4.903 -17.664 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C 0.115 3.885 4 H 0.032 0.968 5 C -0.591 4.591 6 H 0.063 0.937 7 C -0.175 4.175 8 N -0.547 5.547 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.245 5.245 14 C -0.073 4.073 15 C -0.138 4.138 16 C -0.171 4.171 17 C 0.042 3.958 18 H 0.104 0.896 19 O -0.246 6.246 20 C 0.066 3.934 21 C -0.240 4.240 22 C -0.101 4.101 23 C -0.182 4.182 24 C -0.100 4.100 25 C -0.196 4.196 26 C -0.053 4.053 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.033 0.967 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.151 0.849 40 H 0.165 0.835 41 H 0.168 0.832 42 H 0.170 0.830 43 H 0.144 0.856 44 H 0.083 0.917 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -8.469 4.693 -17.468 19.972 hybrid contribution 2.251 -0.163 0.884 2.424 sum -6.218 4.529 -16.584 18.281 Atomic orbital electron populations 1.21554 0.95975 0.99707 1.00923 1.21490 0.94718 0.98195 1.00326 1.19066 0.91510 0.91423 0.86499 0.96837 1.21967 0.94061 1.37175 1.05910 0.93672 1.25543 1.01667 0.94902 0.95412 1.69990 1.36209 1.38270 1.10219 0.85752 0.81819 0.77742 0.77786 1.20114 1.20397 1.20623 1.62298 1.57957 1.02161 1.02062 1.22007 0.97423 0.89063 0.98770 1.21512 1.01333 0.99228 0.91734 1.22039 1.01364 0.94118 0.99537 1.22395 0.98547 0.92330 0.82570 0.89575 1.86057 1.47609 1.73319 1.17635 1.19412 0.91290 0.96235 0.86479 1.21507 0.95273 1.06170 1.01018 1.21308 0.99799 0.97301 0.91688 1.21435 0.96859 1.00673 0.99262 1.21290 0.94255 0.97189 0.97230 1.20710 1.02412 1.05168 0.91301 1.21666 0.96482 0.98302 0.88857 0.94317 0.92581 0.93742 0.95366 0.91784 0.92861 0.91638 0.96707 0.90134 0.89308 0.92765 0.89918 0.84875 0.83450 0.83202 0.82952 0.85560 0.91741 0.96434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.72 71.98 0.70 -4.21 16 2 C -0.11 -5.20 5.00 30.59 0.15 -5.04 16 3 C 0.22 10.97 1.77 44.17 0.08 11.05 16 4 H 0.01 0.75 8.07 -2.39 -0.02 0.73 16 5 C -0.55 -30.00 7.19 25.60 0.18 -29.82 16 6 H 0.05 2.52 5.84 -2.91 -0.02 2.50 16 7 C 0.02 1.37 5.30 84.66 0.45 1.82 16 8 N -0.91 -51.55 11.30 21.45 0.24 -51.30 16 9 Si 0.94 44.08 29.54 68.60 2.03 46.11 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 N -0.52 -21.44 4.09 -875.51 -3.58 -25.02 16 14 C 0.06 2.07 5.13 86.33 0.44 2.52 16 15 C -0.10 -2.76 6.09 30.65 0.19 -2.57 16 16 C -0.13 -3.79 5.36 30.68 0.16 -3.63 16 17 C 0.10 3.17 2.29 30.65 0.07 3.24 16 18 H 0.09 2.62 6.00 -2.39 -0.01 2.61 16 19 O -0.33 -11.24 9.81 -92.36 -0.91 -12.15 16 20 C 0.11 3.17 6.58 22.51 0.15 3.31 16 21 C -0.22 -5.34 8.37 22.37 0.19 -5.15 16 22 C -0.08 -1.57 10.04 22.26 0.22 -1.34 16 23 C -0.16 -2.78 10.04 22.29 0.22 -2.56 16 24 C -0.08 -1.54 10.04 22.25 0.22 -1.31 16 25 C -0.18 -4.41 9.99 22.37 0.22 -4.19 16 26 C 0.08 3.05 4.45 86.33 0.38 3.44 16 27 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 2.07 7.84 -2.39 -0.02 2.05 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.34 6.17 -2.39 -0.01 1.33 16 31 H 0.06 3.45 6.00 -2.39 -0.01 3.43 16 32 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 34 H 0.01 0.62 6.99 -2.39 -0.02 0.60 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 2.02 7.34 -2.39 -0.02 2.00 16 39 H 0.13 3.07 5.65 -2.91 -0.02 3.05 16 40 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 43 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 44 H 0.06 2.76 5.98 -2.39 -0.01 2.74 16 45 H 0.02 0.80 6.61 -2.39 -0.02 0.79 16 Total: -1.00 -61.09 345.21 2.78 -58.30 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.96 Total: 18.49 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 4.04 Total: -34.44 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -3.34 Total: -76.32 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.91 Total: -12.15 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -61.09 2.78 -58.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.005 kcal (2) G-P(sol) polarization free energy of solvation -61.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds