Wall clock time and date at job start Tue Mar 31 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46531 * 2 1 4 4 H 1.09010 * 109.46725 * 184.10148 * 3 2 1 5 5 C 1.50696 * 109.47193 * 64.10493 * 3 2 1 6 6 H 1.08006 * 119.99854 * 245.56477 * 5 3 2 7 7 C 1.37879 * 120.00241 * 65.57001 * 5 3 2 8 8 N 1.31513 * 120.00073 * 9.27986 * 7 5 3 9 9 Si 1.86800 * 119.99749 * 189.28312 * 7 5 3 10 10 H 1.48501 * 109.47037 * 179.97438 * 9 7 5 11 11 H 1.48495 * 109.47289 * 299.99598 * 9 7 5 12 12 H 1.48503 * 109.47358 * 59.99836 * 9 7 5 13 13 N 1.46896 * 109.47045 * 304.09856 * 3 2 1 14 14 C 1.46848 * 111.00287 * 301.80066 * 13 3 2 15 15 C 1.53035 * 109.52097 * 174.15962 * 14 13 3 16 16 C 1.53113 * 109.27832 * 59.18683 * 15 14 13 17 17 C 1.53119 * 109.16090 * 302.33906 * 16 15 14 18 18 H 1.08997 * 109.50290 * 297.71689 * 17 16 15 19 19 O 1.42898 * 109.53948 * 177.61433 * 17 16 15 20 20 C 1.35899 * 116.99817 * 85.40124 * 19 17 16 21 21 C 1.38735 * 120.05238 * 176.05800 * 20 19 17 22 22 C 1.38153 * 119.93760 * 179.74482 * 21 20 19 23 23 C 1.38259 * 120.06036 * 0.50921 * 22 21 20 24 24 C 1.38271 * 120.10805 * 359.76610 * 23 22 21 25 25 C 1.38139 * 120.05864 * 359.97438 * 24 23 22 26 26 C 1.46855 * 110.99633 * 177.59480 * 13 3 2 27 27 H 1.09000 * 109.46998 * 64.12671 * 1 2 3 28 28 H 1.09001 * 109.46732 * 184.13044 * 1 2 3 29 29 H 1.08998 * 109.46964 * 304.13000 * 1 2 3 30 30 H 1.08992 * 109.47314 * 240.00162 * 2 1 3 31 31 H 1.08998 * 109.47050 * 119.99445 * 2 1 3 32 32 H 0.96998 * 119.99832 * 357.34667 * 8 7 5 33 33 H 1.08997 * 109.46752 * 294.18135 * 14 13 3 34 34 H 1.09003 * 109.45801 * 54.14827 * 14 13 3 35 35 H 1.08992 * 109.50754 * 299.23941 * 15 14 13 36 36 H 1.09005 * 109.50214 * 179.11869 * 15 14 13 37 37 H 1.09000 * 109.52757 * 182.43610 * 16 15 14 38 38 H 1.09000 * 109.57964 * 62.27632 * 16 15 14 39 39 H 1.07993 * 120.03444 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.96923 * 180.27450 * 22 21 20 41 41 H 1.07997 * 119.94956 * 179.74893 * 23 22 21 42 42 H 1.08001 * 119.96968 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.03338 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.45855 * 305.85664 * 26 13 3 45 45 H 1.08998 * 109.45998 * 65.82693 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1275 1.4435 -0.0735 5 6 1.6223 2.1230 1.2781 6 1 0.9250 2.9473 1.2482 7 6 2.1304 1.6934 2.4857 8 7 3.1115 0.8180 2.5123 9 14 1.4251 2.3547 4.0841 10 1 2.1387 1.7396 5.2319 11 1 1.5952 3.8292 4.1276 12 1 -0.0197 2.0205 4.1634 13 7 1.4710 2.1630 -1.1468 14 6 1.8226 1.5024 -2.4103 15 6 1.0963 2.1922 -3.5674 16 6 1.5025 3.6678 -3.6112 17 6 1.1699 4.3208 -2.2668 18 1 0.0940 4.2775 -2.0974 19 8 1.5964 5.6845 -2.2793 20 6 0.7352 6.5955 -2.8039 21 6 1.0494 7.9465 -2.7737 22 6 0.1745 8.8700 -3.3125 23 6 -1.0180 8.4500 -3.8720 24 6 -1.3360 7.1046 -3.8981 25 6 -0.4622 6.1766 -3.3656 26 6 1.8940 3.5693 -1.1473 27 1 -0.3633 0.4485 -0.9247 28 1 -0.3633 -1.0250 0.0740 29 1 -0.3633 0.5766 0.8507 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.4517 0.4456 1.6838 33 1 2.8993 1.5675 -2.5670 34 1 1.5247 0.4548 -2.3675 35 1 0.0194 2.1154 -3.4186 36 1 1.3697 1.7115 -4.5068 37 1 0.9548 4.1730 -4.4068 38 1 2.5732 3.7465 -3.7994 39 1 1.9787 8.2756 -2.3328 40 1 0.4206 9.9214 -3.2932 41 1 -1.7024 9.1739 -4.2890 42 1 -2.2680 6.7789 -4.3361 43 1 -0.7112 5.1259 -3.3858 44 1 1.6480 4.0228 -0.1872 45 1 2.9704 3.6247 -1.3099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:32 Heat of formation + Delta-G solvation = -17.703547 kcal Electronic energy + Delta-G solvation = -23759.359131 eV Core-core repulsion = 20548.580060 eV Total energy + Delta-G solvation = -3210.779071 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31865 -38.57249 -37.06587 -34.72428 -31.92234 -31.04091 -30.99350 -30.15220 -28.93819 -26.17186 -24.13648 -23.48756 -22.83883 -22.20126 -21.59384 -19.79892 -19.16071 -18.13521 -16.77519 -16.10159 -15.75909 -15.38400 -14.98777 -14.66215 -14.29518 -14.03313 -13.72196 -13.49069 -13.22768 -13.17825 -12.98428 -12.87698 -12.40148 -12.10396 -11.71164 -11.61229 -11.43601 -11.25415 -11.11846 -10.81956 -10.72611 -10.60679 -10.45236 -10.19442 -10.09712 -9.99021 -9.83370 -9.66710 -9.02575 -8.49563 -8.34666 -8.12595 -7.35897 -6.35542 -4.05542 1.31201 1.45336 3.26890 3.44541 3.46141 3.64229 3.78383 4.50220 4.79111 4.80298 4.87807 4.96005 5.03284 5.12469 5.17181 5.33146 5.35889 5.40148 5.49398 5.58866 5.68873 5.80576 5.94070 5.97802 6.02892 6.05884 6.13709 6.25205 6.27542 6.32892 6.36409 6.41017 6.45395 6.48922 6.54194 6.63863 6.80961 6.85130 7.03323 7.12065 7.32254 7.44728 7.58082 7.83877 7.94541 8.33387 8.56661 8.85986 9.63677 11.01055 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016946 B = 0.004563 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.872917 B = 6134.189429 C = 7113.126127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C 0.208 3.792 4 H -0.009 1.009 5 C -0.583 4.583 6 H 0.057 0.943 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.518 5.518 14 C 0.044 3.956 15 C -0.110 4.110 16 C -0.142 4.142 17 C 0.088 3.912 18 H 0.080 0.920 19 O -0.309 6.309 20 C 0.142 3.858 21 C -0.159 4.159 22 C -0.083 4.083 23 C -0.168 4.168 24 C -0.081 4.081 25 C -0.211 4.211 26 C 0.074 3.926 27 H 0.045 0.955 28 H 0.020 0.980 29 H 0.062 0.938 30 H 0.023 0.977 31 H 0.065 0.935 32 H 0.269 0.731 33 H 0.022 0.978 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.131 0.869 44 H 0.097 0.903 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 9.159 -13.454 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.152 4.152 3 C 0.102 3.898 4 H 0.008 0.992 5 C -0.621 4.621 6 H 0.075 0.925 7 C -0.182 4.182 8 N -0.547 5.547 9 Si 0.893 3.107 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.244 5.244 14 C -0.084 4.084 15 C -0.148 4.148 16 C -0.179 4.179 17 C 0.032 3.968 18 H 0.098 0.902 19 O -0.222 6.222 20 C 0.096 3.904 21 C -0.178 4.178 22 C -0.101 4.101 23 C -0.187 4.187 24 C -0.099 4.099 25 C -0.229 4.229 26 C -0.054 4.054 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.149 0.851 44 H 0.115 0.885 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.430 9.094 -11.654 16.121 hybrid contribution 0.589 -0.076 -1.895 1.985 sum -5.842 9.018 -13.549 17.292 Atomic orbital electron populations 1.21449 0.96234 0.98072 1.02112 1.21638 0.96440 0.98054 0.99072 1.19368 0.91749 0.90510 0.88195 0.99165 1.21796 1.30023 1.19147 0.91140 0.92517 1.25695 0.94446 0.95975 1.02073 1.70810 1.23060 1.29321 1.31507 0.83598 0.75805 0.75733 0.75566 1.20924 1.21535 1.21355 1.61845 1.60162 1.00291 1.02076 1.22180 0.96748 0.99066 0.90418 1.21520 1.01248 0.93994 0.98054 1.22129 1.02162 0.96711 0.96935 1.22596 1.00200 0.77760 0.96261 0.90206 1.86096 1.42262 1.17496 1.76325 1.19108 0.89104 0.89708 0.92472 1.20481 1.01955 0.90057 1.05265 1.20925 0.93636 0.98992 0.96553 1.20999 0.97991 0.95826 1.03852 1.20939 0.98531 0.92952 0.97495 1.21393 0.95536 1.00938 1.05063 1.21800 0.96202 0.89694 0.97740 0.93544 0.96110 0.91848 0.95873 0.91655 0.91956 0.95997 0.90434 0.91231 0.91736 0.91912 0.91451 0.85345 0.85688 0.86265 0.86067 0.85092 0.88469 0.95293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 9.48 37.16 0.35 -2.15 16 2 C -0.11 -2.55 4.86 -26.73 -0.13 -2.68 16 3 C 0.21 4.98 1.38 -68.86 -0.10 4.88 16 4 H -0.01 -0.24 7.49 -51.92 -0.39 -0.63 16 5 C -0.58 -15.43 6.50 -34.44 -0.22 -15.65 16 6 H 0.06 1.53 6.79 -52.48 -0.36 1.18 16 7 C 0.02 0.62 5.17 -17.82 -0.09 0.53 16 8 N -0.91 -26.50 13.03 55.43 0.72 -25.78 16 9 Si 1.06 24.78 29.91 -169.99 -5.08 19.69 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.52 -10.53 3.68 -228.07 -0.84 -11.37 16 14 C 0.04 0.76 4.99 -3.83 -0.02 0.75 16 15 C -0.11 -1.54 6.09 -26.65 -0.16 -1.70 16 16 C -0.14 -2.02 5.32 -26.61 -0.14 -2.16 16 17 C 0.09 1.45 2.27 -26.65 -0.06 1.39 16 18 H 0.08 1.31 6.20 -51.93 -0.32 0.99 16 19 O -0.31 -5.18 9.80 -19.42 -0.19 -5.37 16 20 C 0.14 2.10 6.61 -39.21 -0.26 1.84 16 21 C -0.16 -2.08 9.99 -39.43 -0.39 -2.47 16 22 C -0.08 -0.90 10.04 -39.60 -0.40 -1.30 16 23 C -0.17 -1.77 10.04 -39.56 -0.40 -2.17 16 24 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 25 C -0.21 -2.79 8.32 -39.43 -0.33 -3.12 16 26 C 0.07 1.47 4.88 -3.83 -0.02 1.45 16 27 H 0.05 0.90 7.37 -51.93 -0.38 0.52 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 1.44 7.22 -51.93 -0.37 1.06 16 30 H 0.02 0.47 6.48 -51.93 -0.34 0.13 16 31 H 0.06 1.63 6.40 -51.93 -0.33 1.29 16 32 H 0.27 7.81 6.07 -40.82 -0.25 7.57 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 1.33 5.93 -51.93 -0.31 1.02 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.81 7.07 -51.93 -0.37 0.44 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.13 1.67 5.48 -52.49 -0.29 1.39 16 44 H 0.10 2.17 6.24 -51.93 -0.32 1.84 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 343.56 15.07 5.18 5.18 Total: -1.00 -28.62 343.56 -10.03 -38.65 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.05 Total: 2.86 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.76 Total: -23.87 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.12 Total: -37.14 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.19 Total: -5.37 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.62 -10.03 -38.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.950 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds