Wall clock time and date at job start Tue Mar 31 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46531 * 2 1 4 4 H 1.09010 * 109.46725 * 184.10148 * 3 2 1 5 5 C 1.50696 * 109.47193 * 64.10493 * 3 2 1 6 6 H 1.08006 * 119.99854 * 245.56477 * 5 3 2 7 7 C 1.37879 * 120.00241 * 65.57001 * 5 3 2 8 8 N 1.31513 * 120.00073 * 9.27986 * 7 5 3 9 9 Si 1.86800 * 119.99749 * 189.28312 * 7 5 3 10 10 H 1.48501 * 109.47037 * 179.97438 * 9 7 5 11 11 H 1.48495 * 109.47289 * 299.99598 * 9 7 5 12 12 H 1.48503 * 109.47358 * 59.99836 * 9 7 5 13 13 N 1.46896 * 109.47045 * 304.09856 * 3 2 1 14 14 C 1.46848 * 111.00287 * 301.80066 * 13 3 2 15 15 C 1.53035 * 109.52097 * 174.15962 * 14 13 3 16 16 C 1.53113 * 109.27832 * 59.18683 * 15 14 13 17 17 C 1.53119 * 109.16090 * 302.33906 * 16 15 14 18 18 H 1.08997 * 109.50290 * 297.71689 * 17 16 15 19 19 O 1.42898 * 109.53948 * 177.61433 * 17 16 15 20 20 C 1.35899 * 116.99817 * 85.40124 * 19 17 16 21 21 C 1.38735 * 120.05238 * 176.05800 * 20 19 17 22 22 C 1.38153 * 119.93760 * 179.74482 * 21 20 19 23 23 C 1.38259 * 120.06036 * 0.50921 * 22 21 20 24 24 C 1.38271 * 120.10805 * 359.76610 * 23 22 21 25 25 C 1.38139 * 120.05864 * 359.97438 * 24 23 22 26 26 C 1.46855 * 110.99633 * 177.59480 * 13 3 2 27 27 H 1.09000 * 109.46998 * 64.12671 * 1 2 3 28 28 H 1.09001 * 109.46732 * 184.13044 * 1 2 3 29 29 H 1.08998 * 109.46964 * 304.13000 * 1 2 3 30 30 H 1.08992 * 109.47314 * 240.00162 * 2 1 3 31 31 H 1.08998 * 109.47050 * 119.99445 * 2 1 3 32 32 H 0.96998 * 119.99832 * 357.34667 * 8 7 5 33 33 H 1.08997 * 109.46752 * 294.18135 * 14 13 3 34 34 H 1.09003 * 109.45801 * 54.14827 * 14 13 3 35 35 H 1.08992 * 109.50754 * 299.23941 * 15 14 13 36 36 H 1.09005 * 109.50214 * 179.11869 * 15 14 13 37 37 H 1.09000 * 109.52757 * 182.43610 * 16 15 14 38 38 H 1.09000 * 109.57964 * 62.27632 * 16 15 14 39 39 H 1.07993 * 120.03444 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.96923 * 180.27450 * 22 21 20 41 41 H 1.07997 * 119.94956 * 179.74893 * 23 22 21 42 42 H 1.08001 * 119.96968 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.03338 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.45855 * 305.85664 * 26 13 3 45 45 H 1.08998 * 109.45998 * 65.82693 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1275 1.4435 -0.0735 5 6 1.6223 2.1230 1.2781 6 1 0.9250 2.9473 1.2482 7 6 2.1304 1.6934 2.4857 8 7 3.1115 0.8180 2.5123 9 14 1.4251 2.3547 4.0841 10 1 2.1387 1.7396 5.2319 11 1 1.5952 3.8292 4.1276 12 1 -0.0197 2.0205 4.1634 13 7 1.4710 2.1630 -1.1468 14 6 1.8226 1.5024 -2.4103 15 6 1.0963 2.1922 -3.5674 16 6 1.5025 3.6678 -3.6112 17 6 1.1699 4.3208 -2.2668 18 1 0.0940 4.2775 -2.0974 19 8 1.5964 5.6845 -2.2793 20 6 0.7352 6.5955 -2.8039 21 6 1.0494 7.9465 -2.7737 22 6 0.1745 8.8700 -3.3125 23 6 -1.0180 8.4500 -3.8720 24 6 -1.3360 7.1046 -3.8981 25 6 -0.4622 6.1766 -3.3656 26 6 1.8940 3.5693 -1.1473 27 1 -0.3633 0.4485 -0.9247 28 1 -0.3633 -1.0250 0.0740 29 1 -0.3633 0.5766 0.8507 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.4517 0.4456 1.6838 33 1 2.8993 1.5675 -2.5670 34 1 1.5247 0.4548 -2.3675 35 1 0.0194 2.1154 -3.4186 36 1 1.3697 1.7115 -4.5068 37 1 0.9548 4.1730 -4.4068 38 1 2.5732 3.7465 -3.7994 39 1 1.9787 8.2756 -2.3328 40 1 0.4206 9.9214 -3.2932 41 1 -1.7024 9.1739 -4.2890 42 1 -2.2680 6.7789 -4.3361 43 1 -0.7112 5.1259 -3.3858 44 1 1.6480 4.0228 -0.1872 45 1 2.9704 3.6247 -1.3099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:31 Heat of formation + Delta-G solvation = -32.757444 kcal Electronic energy + Delta-G solvation = -23760.011917 eV Core-core repulsion = 20548.580060 eV Total energy + Delta-G solvation = -3211.431857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48334 -39.94323 -38.29133 -36.36515 -33.75731 -32.55761 -32.03221 -31.33976 -30.12789 -28.03330 -25.94809 -24.78023 -24.25151 -23.31529 -22.79207 -21.33438 -20.70790 -19.32431 -18.62307 -17.45786 -16.82219 -16.72760 -16.26422 -15.88352 -15.83251 -15.62849 -15.28645 -14.83095 -14.60341 -14.39921 -14.32983 -14.14357 -13.77503 -13.65985 -13.36737 -13.01226 -12.71758 -12.67132 -12.50378 -12.36841 -12.22957 -12.01314 -11.96538 -11.88707 -11.66113 -11.51596 -11.49665 -11.15903 -10.50983 -10.40321 -9.93028 -9.15838 -9.10302 -8.56079 -6.25612 0.40945 0.51295 1.52767 1.59425 1.78286 2.06041 2.56587 2.86778 3.21143 3.28813 3.65586 3.72210 3.90203 3.96018 3.99591 4.11361 4.19959 4.30922 4.37838 4.44603 4.47905 4.53143 4.55302 4.59096 4.67035 4.71654 4.80566 4.82983 4.93579 4.95435 5.00351 5.09804 5.10651 5.18065 5.27854 5.34627 5.42632 5.49075 5.50719 5.61254 5.70275 5.89286 5.93853 6.04358 6.38729 6.48285 6.52453 6.74380 7.50735 8.80680 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016946 B = 0.004563 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.872917 B = 6134.189429 C = 7113.126127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.107 4.107 3 C 0.210 3.790 4 H -0.050 1.050 5 C -0.581 4.581 6 H 0.047 0.953 7 C -0.025 4.025 8 N -0.936 5.936 9 Si 1.105 2.895 10 H -0.286 1.286 11 H -0.278 1.278 12 H -0.270 1.270 13 N -0.514 5.514 14 C 0.040 3.960 15 C -0.100 4.100 16 C -0.133 4.133 17 C 0.101 3.899 18 H 0.082 0.918 19 O -0.333 6.333 20 C 0.109 3.891 21 C -0.176 4.176 22 C -0.082 4.082 23 C -0.163 4.163 24 C -0.084 4.084 25 C -0.220 4.220 26 C 0.078 3.922 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.257 0.743 33 H 0.011 0.989 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.127 0.873 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.133 0.867 44 H 0.063 0.937 45 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.839 10.301 -15.643 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.145 4.145 3 C 0.103 3.897 4 H -0.033 1.033 5 C -0.620 4.620 6 H 0.065 0.935 7 C -0.223 4.223 8 N -0.574 5.574 9 Si 0.929 3.071 10 H -0.212 1.212 11 H -0.204 1.204 12 H -0.195 1.195 13 N -0.240 5.240 14 C -0.088 4.088 15 C -0.138 4.138 16 C -0.171 4.171 17 C 0.044 3.956 18 H 0.100 0.900 19 O -0.247 6.247 20 C 0.064 3.936 21 C -0.195 4.195 22 C -0.099 4.099 23 C -0.181 4.181 24 C -0.101 4.101 25 C -0.239 4.239 26 C -0.051 4.051 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.145 0.855 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.150 0.850 44 H 0.082 0.918 45 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -8.990 10.250 -13.877 19.454 hybrid contribution 1.380 -0.313 -1.287 1.913 sum -7.610 9.936 -15.164 19.662 Atomic orbital electron populations 1.21333 0.94369 0.99333 1.01703 1.21507 0.97910 0.96483 0.98643 1.19211 0.89471 0.92001 0.89015 1.03288 1.22012 1.28976 1.18547 0.92427 0.93511 1.26936 0.94215 0.95805 1.05369 1.70916 1.24661 1.31013 1.30837 0.83066 0.76063 0.75760 0.72242 1.21172 1.20391 1.19488 1.61826 1.59368 1.00289 1.02494 1.22335 0.96796 0.99604 0.90018 1.21504 1.01252 0.93335 0.97678 1.22073 1.02036 0.96982 0.96000 1.22335 0.99336 0.77976 0.95910 0.90041 1.86036 1.43455 1.17682 1.77517 1.19426 0.89987 0.89894 0.94336 1.20721 1.02743 0.89998 1.06037 1.21302 0.93260 1.00006 0.95363 1.21446 0.97987 0.96228 1.02412 1.21315 0.99031 0.93070 0.96732 1.21510 0.95369 1.01587 1.05436 1.21673 0.95467 0.90023 0.97922 0.92037 0.93653 0.94363 0.93725 0.94616 0.93240 0.97031 0.89844 0.90243 0.88515 0.89624 0.92214 0.85518 0.82834 0.83077 0.83398 0.84972 0.91850 0.97415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.43 9.48 71.98 0.68 -3.75 16 2 C -0.11 -4.86 4.86 30.60 0.15 -4.71 16 3 C 0.21 10.49 1.38 44.17 0.06 10.55 16 4 H -0.05 -2.87 7.49 -2.38 -0.02 -2.89 16 5 C -0.58 -32.02 6.50 25.60 0.17 -31.86 16 6 H 0.05 2.63 6.79 -2.91 -0.02 2.61 16 7 C -0.02 -1.39 5.17 84.66 0.44 -0.96 16 8 N -0.94 -56.70 13.03 21.45 0.28 -56.42 16 9 Si 1.11 50.86 29.91 68.60 2.05 52.91 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 13 N -0.51 -21.35 3.68 -875.48 -3.22 -24.57 16 14 C 0.04 1.36 4.99 86.32 0.43 1.79 16 15 C -0.10 -2.54 6.09 30.64 0.19 -2.35 16 16 C -0.13 -3.61 5.32 30.67 0.16 -3.44 16 17 C 0.10 3.34 2.27 30.65 0.07 3.41 16 18 H 0.08 2.65 6.20 -2.39 -0.01 2.63 16 19 O -0.33 -11.48 9.80 -92.41 -0.91 -12.39 16 20 C 0.11 3.18 6.61 22.51 0.15 3.33 16 21 C -0.18 -4.49 9.99 22.37 0.22 -4.27 16 22 C -0.08 -1.56 10.04 22.25 0.22 -1.34 16 23 C -0.16 -2.82 10.04 22.28 0.22 -2.60 16 24 C -0.08 -1.62 10.04 22.25 0.22 -1.40 16 25 C -0.22 -5.47 8.32 22.36 0.19 -5.28 16 26 C 0.08 3.26 4.88 86.33 0.42 3.68 16 27 H 0.06 2.26 7.37 -2.39 -0.02 2.25 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.71 7.22 -2.39 -0.02 1.69 16 30 H 0.04 1.80 6.48 -2.39 -0.02 1.79 16 31 H 0.04 1.82 6.40 -2.39 -0.02 1.81 16 32 H 0.26 15.78 6.07 -92.71 -0.56 15.21 16 33 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.08 2.72 5.93 -2.39 -0.01 2.70 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.09 1.98 7.07 -2.39 -0.02 1.96 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 40 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 41 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 43 H 0.13 3.14 5.48 -2.91 -0.02 3.12 16 44 H 0.06 3.03 6.24 -2.39 -0.01 3.01 16 45 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -65.53 343.56 3.37 -62.16 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.17 Total: 17.51 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 4.00 Total: -39.20 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -2.94 Total: -80.98 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.91 Total: -12.39 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.91 kcal Total: -65.53 3.37 -62.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.404 kcal (2) G-P(sol) polarization free energy of solvation -65.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds