Wall clock time and date at job start Tue Mar 31 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47154 * 2 1 4 4 H 1.09009 * 109.47257 * 306.09514 * 3 2 1 5 5 C 1.50697 * 109.47415 * 186.09138 * 3 2 1 6 6 H 1.07998 * 120.00172 * 244.88120 * 5 3 2 7 7 C 1.37884 * 119.99805 * 64.88243 * 5 3 2 8 8 N 1.31515 * 119.99749 * 194.31967 * 7 5 3 9 9 Si 1.86801 * 119.99954 * 14.31932 * 7 5 3 10 10 H 1.48501 * 109.46649 * 92.85123 * 9 7 5 11 11 H 1.48494 * 109.46907 * 212.84947 * 9 7 5 12 12 H 1.48490 * 109.47213 * 332.85236 * 9 7 5 13 13 N 1.46901 * 109.46998 * 66.09022 * 3 2 1 14 14 C 1.47479 * 110.99993 * 276.21858 * 13 3 2 15 15 C 1.53516 * 87.93048 * 221.29510 * 14 13 3 16 16 C 1.47482 * 110.99795 * 180.24873 * 13 3 2 17 17 H 1.08997 * 113.47775 * 23.87913 * 16 13 3 18 18 C 1.53002 * 113.47541 * 253.47101 * 16 13 3 19 19 O 1.42905 * 109.47115 * 295.00135 * 18 16 13 20 20 C 1.42902 * 114.00165 * 179.97438 * 19 18 16 21 21 C 1.50695 * 109.47077 * 179.97438 * 20 19 18 22 22 C 1.38226 * 120.00566 * 269.72926 * 21 20 19 23 23 C 1.38244 * 120.00339 * 179.81280 * 22 21 20 24 24 C 1.38230 * 119.99624 * 0.41753 * 23 22 21 25 25 C 1.38241 * 120.00356 * 359.81291 * 24 23 22 26 26 C 1.38239 * 119.99831 * 0.02562 * 25 24 23 27 27 H 1.08990 * 109.47526 * 52.68464 * 1 2 3 28 28 H 1.09007 * 109.46603 * 172.68574 * 1 2 3 29 29 H 1.09002 * 109.46968 * 292.68072 * 1 2 3 30 30 H 1.08998 * 109.47305 * 239.99988 * 2 1 3 31 31 H 1.09002 * 109.47279 * 119.99723 * 2 1 3 32 32 H 0.96996 * 119.99866 * 179.97438 * 8 7 5 33 33 H 1.09000 * 113.47836 * 336.06516 * 14 13 3 34 34 H 1.08998 * 113.47781 * 106.53424 * 14 13 3 35 35 H 1.08995 * 114.17265 * 272.37190 * 15 14 13 36 36 H 1.09009 * 114.16663 * 139.67373 * 15 14 13 37 37 H 1.09001 * 109.47315 * 175.00623 * 18 16 13 38 38 H 1.08999 * 109.47209 * 55.00040 * 18 16 13 39 39 H 1.09000 * 109.47037 * 300.00218 * 20 19 18 40 40 H 1.09004 * 109.46457 * 60.00111 * 20 19 18 41 41 H 1.08002 * 120.00079 * 359.97438 * 22 21 20 42 42 H 1.08001 * 120.00214 * 180.20808 * 23 22 21 43 43 H 1.08001 * 120.00227 * 179.79114 * 24 23 22 44 44 H 1.08000 * 120.00092 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00136 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5903 1.9869 -0.8305 5 6 3.5394 1.4452 -0.1508 6 1 4.1621 1.8130 0.6513 7 6 4.1163 0.9782 -1.3128 8 7 5.4042 0.7144 -1.3476 9 14 3.0684 0.7200 -2.8375 10 1 3.1054 1.9447 -3.6766 11 1 3.5996 -0.4286 -3.6144 12 1 1.6674 0.4389 -2.4335 13 7 1.6740 2.0912 1.2661 14 6 0.2967 2.6159 1.2124 15 6 0.8040 3.8668 1.9436 16 6 2.1452 3.4883 1.2997 17 1 2.2905 3.9215 0.3101 18 6 3.3466 3.7043 2.2222 19 8 2.9604 3.4511 3.5745 20 6 4.0154 3.6248 4.5226 21 6 3.4987 3.3340 5.9080 22 6 2.9624 4.3523 6.6736 23 6 2.4849 4.0847 7.9431 24 6 2.5516 2.8004 8.4500 25 6 3.0924 1.7830 7.6863 26 6 3.5668 2.0499 6.4156 27 1 -0.3634 0.6229 -0.8172 28 1 -0.3633 -1.0194 -0.1308 29 1 -0.3633 0.3963 0.9482 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.8100 0.3855 -2.1649 33 1 -0.0523 2.8165 0.1995 34 1 -0.4141 2.0304 1.7956 35 1 0.7915 3.7844 3.0303 36 1 0.3803 4.8013 1.5757 37 1 3.6949 4.7331 2.1304 38 1 4.1488 3.0226 1.9397 39 1 4.8312 2.9412 4.2877 40 1 4.3779 4.6519 4.4785 41 1 2.9140 5.3565 6.2791 42 1 2.0627 4.8796 8.5399 43 1 2.1817 2.5920 9.4431 44 1 3.1449 0.7797 8.0826 45 1 3.9897 1.2552 5.8190 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:34 Heat of formation + Delta-G solvation = 19.599207 kcal Electronic energy + Delta-G solvation = -23400.237045 eV Core-core repulsion = 20191.075543 eV Total energy + Delta-G solvation = -3209.161502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.72512 -39.17662 -36.86283 -34.13900 -32.06966 -31.73952 -30.86011 -28.80645 -28.23676 -25.68936 -25.48134 -22.70316 -22.53265 -22.22513 -21.20485 -19.79943 -18.82054 -16.95945 -16.89007 -16.07598 -15.66875 -15.50120 -15.15401 -14.73402 -14.48419 -14.13912 -13.55058 -13.37190 -13.13364 -12.90663 -12.67768 -12.52262 -12.33324 -12.10964 -11.87897 -11.60435 -11.46808 -11.24126 -11.04958 -10.95764 -10.81520 -10.73996 -10.31036 -10.01484 -9.79200 -9.57175 -9.29840 -9.19602 -8.88191 -8.77497 -8.74686 -8.46970 -7.81835 -6.11689 -4.06494 1.32697 1.44288 3.25140 3.35572 3.39024 3.69784 4.37114 4.40178 4.82884 4.87817 4.95406 5.05007 5.13802 5.19373 5.20285 5.38403 5.49748 5.52480 5.66903 5.72953 5.86912 5.94334 5.98887 6.00197 6.02024 6.09168 6.13309 6.18951 6.21436 6.26662 6.36453 6.43541 6.47293 6.52156 6.62336 6.70246 6.71877 6.74344 6.89632 7.02167 7.02517 7.24186 7.51632 7.69171 7.82481 8.09516 8.60655 8.98904 9.54126 11.00624 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020337 B = 0.004055 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.484595 B = 6903.935287 C = 7217.518006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C 0.156 3.844 4 H 0.000 1.000 5 C -0.516 4.516 6 H 0.083 0.917 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.858 3.142 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.251 1.251 13 N -0.441 5.441 14 C -0.006 4.006 15 C -0.143 4.143 16 C 0.049 3.951 17 H 0.085 0.915 18 C 0.080 3.920 19 O -0.366 6.366 20 C 0.100 3.900 21 C -0.078 4.078 22 C -0.102 4.102 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.095 4.095 27 H 0.039 0.961 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.263 0.737 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.455 6.632 13.652 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C 0.048 3.952 4 H 0.017 0.983 5 C -0.553 4.553 6 H 0.100 0.900 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.685 3.315 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.175 1.175 13 N -0.163 5.163 14 C -0.135 4.135 15 C -0.181 4.181 16 C -0.061 4.061 17 H 0.103 0.897 18 C 0.004 3.996 19 O -0.286 6.286 20 C 0.023 3.977 21 C -0.078 4.078 22 C -0.120 4.120 23 C -0.146 4.146 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.113 4.113 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.263 5.987 14.064 16.518 hybrid contribution -0.310 0.274 -1.922 1.966 sum -6.573 6.261 12.142 15.161 Atomic orbital electron populations 1.22021 0.98617 0.99735 1.00930 1.21806 0.92629 0.99162 1.01244 1.20224 0.96898 0.91497 0.86605 0.98286 1.21007 0.88996 1.42817 1.02499 0.89957 1.24885 0.94693 0.94363 0.98613 1.69960 1.11224 1.44107 1.27679 0.87270 0.82499 0.77877 0.83830 1.20882 1.21353 1.17535 1.68877 1.02192 1.11395 1.33873 1.23759 0.95060 0.95848 0.98882 1.23199 0.96471 0.96796 1.01646 1.23075 0.93369 0.92438 0.97191 0.89680 1.22397 0.97859 0.98427 0.80958 1.87958 1.34202 1.90799 1.15619 1.21226 0.90622 0.99702 0.86136 1.19702 0.99470 0.93753 0.94895 1.21057 0.97685 0.99046 0.94242 1.21093 1.00662 0.96862 0.95953 1.21135 0.99807 0.93272 0.99753 1.21150 0.99259 0.99171 0.94679 1.21173 0.98505 0.96250 0.95382 0.94190 0.94477 0.92505 0.92856 0.92046 0.92721 0.92679 0.90823 0.88352 0.92320 0.94358 0.91091 0.92518 0.93236 0.86137 0.86268 0.86373 0.86097 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.87 37.16 0.33 -2.57 16 2 C -0.11 -2.46 4.85 -26.73 -0.13 -2.59 16 3 C 0.16 3.66 0.90 -68.87 -0.06 3.59 16 4 H 0.00 -0.01 6.17 -51.92 -0.32 -0.33 16 5 C -0.52 -14.00 8.46 -34.44 -0.29 -14.29 16 6 H 0.08 2.40 5.59 -52.49 -0.29 2.11 16 7 C 0.08 2.16 5.34 -17.82 -0.10 2.06 16 8 N -0.89 -26.62 13.96 55.43 0.77 -25.84 16 9 Si 0.86 20.95 25.76 -169.99 -4.38 16.57 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.25 -5.82 5.45 56.52 0.31 -5.52 16 13 N -0.44 -9.24 5.91 -229.90 -1.36 -10.60 16 14 C -0.01 -0.11 5.61 -7.54 -0.04 -0.15 16 15 C -0.14 -2.33 7.83 -26.20 -0.21 -2.54 16 16 C 0.05 0.93 2.86 -71.43 -0.20 0.73 16 17 H 0.09 1.68 7.89 -51.93 -0.41 1.27 16 18 C 0.08 1.46 6.17 37.16 0.23 1.69 16 19 O -0.37 -6.45 8.77 -35.23 -0.31 -6.76 16 20 C 0.10 1.47 6.06 36.00 0.22 1.69 16 21 C -0.08 -1.08 5.51 -104.63 -0.58 -1.66 16 22 C -0.10 -1.24 9.70 -39.58 -0.38 -1.63 16 23 C -0.13 -1.38 10.05 -39.58 -0.40 -1.77 16 24 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 25 C -0.12 -1.45 10.05 -39.58 -0.40 -1.84 16 26 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 27 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 28 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.06 1.00 5.67 -51.93 -0.29 0.70 16 30 H 0.05 1.25 4.92 -51.93 -0.26 0.99 16 31 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.06 0.95 7.53 -51.93 -0.39 0.56 16 34 H 0.07 1.23 6.90 -51.93 -0.36 0.87 16 35 H 0.10 1.66 6.91 -51.93 -0.36 1.30 16 36 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.51 5.93 -51.93 -0.31 1.20 16 39 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 40 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -30.14 349.06 -10.09 -40.23 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.29 Total: 3.78 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -2.79 Total: -22.63 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.58 Total: -36.45 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.31 Total: -6.76 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.38 Total: 16.57 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.14 -10.09 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.829 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds