Wall clock time and date at job start Tue Mar 31 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47154 * 2 1 4 4 H 1.09009 * 109.47257 * 306.09514 * 3 2 1 5 5 C 1.50697 * 109.47415 * 186.09138 * 3 2 1 6 6 H 1.07998 * 120.00172 * 244.88120 * 5 3 2 7 7 C 1.37884 * 119.99805 * 64.88243 * 5 3 2 8 8 N 1.31515 * 119.99749 * 194.31967 * 7 5 3 9 9 Si 1.86801 * 119.99954 * 14.31932 * 7 5 3 10 10 H 1.48501 * 109.46649 * 92.85123 * 9 7 5 11 11 H 1.48494 * 109.46907 * 212.84947 * 9 7 5 12 12 H 1.48490 * 109.47213 * 332.85236 * 9 7 5 13 13 N 1.46901 * 109.46998 * 66.09022 * 3 2 1 14 14 C 1.47479 * 110.99993 * 276.21858 * 13 3 2 15 15 C 1.53516 * 87.93048 * 221.29510 * 14 13 3 16 16 C 1.47482 * 110.99795 * 180.24873 * 13 3 2 17 17 H 1.08997 * 113.47775 * 23.87913 * 16 13 3 18 18 C 1.53002 * 113.47541 * 253.47101 * 16 13 3 19 19 O 1.42905 * 109.47115 * 295.00135 * 18 16 13 20 20 C 1.42902 * 114.00165 * 179.97438 * 19 18 16 21 21 C 1.50695 * 109.47077 * 179.97438 * 20 19 18 22 22 C 1.38226 * 120.00566 * 269.72926 * 21 20 19 23 23 C 1.38244 * 120.00339 * 179.81280 * 22 21 20 24 24 C 1.38230 * 119.99624 * 0.41753 * 23 22 21 25 25 C 1.38241 * 120.00356 * 359.81291 * 24 23 22 26 26 C 1.38239 * 119.99831 * 0.02562 * 25 24 23 27 27 H 1.08990 * 109.47526 * 52.68464 * 1 2 3 28 28 H 1.09007 * 109.46603 * 172.68574 * 1 2 3 29 29 H 1.09002 * 109.46968 * 292.68072 * 1 2 3 30 30 H 1.08998 * 109.47305 * 239.99988 * 2 1 3 31 31 H 1.09002 * 109.47279 * 119.99723 * 2 1 3 32 32 H 0.96996 * 119.99866 * 179.97438 * 8 7 5 33 33 H 1.09000 * 113.47836 * 336.06516 * 14 13 3 34 34 H 1.08998 * 113.47781 * 106.53424 * 14 13 3 35 35 H 1.08995 * 114.17265 * 272.37190 * 15 14 13 36 36 H 1.09009 * 114.16663 * 139.67373 * 15 14 13 37 37 H 1.09001 * 109.47315 * 175.00623 * 18 16 13 38 38 H 1.08999 * 109.47209 * 55.00040 * 18 16 13 39 39 H 1.09000 * 109.47037 * 300.00218 * 20 19 18 40 40 H 1.09004 * 109.46457 * 60.00111 * 20 19 18 41 41 H 1.08002 * 120.00079 * 359.97438 * 22 21 20 42 42 H 1.08001 * 120.00214 * 180.20808 * 23 22 21 43 43 H 1.08001 * 120.00227 * 179.79114 * 24 23 22 44 44 H 1.08000 * 120.00092 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00136 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5903 1.9869 -0.8305 5 6 3.5394 1.4452 -0.1508 6 1 4.1621 1.8130 0.6513 7 6 4.1163 0.9782 -1.3128 8 7 5.4042 0.7144 -1.3476 9 14 3.0684 0.7200 -2.8375 10 1 3.1054 1.9447 -3.6766 11 1 3.5996 -0.4286 -3.6144 12 1 1.6674 0.4389 -2.4335 13 7 1.6740 2.0912 1.2661 14 6 0.2967 2.6159 1.2124 15 6 0.8040 3.8668 1.9436 16 6 2.1452 3.4883 1.2997 17 1 2.2905 3.9215 0.3101 18 6 3.3466 3.7043 2.2222 19 8 2.9604 3.4511 3.5745 20 6 4.0154 3.6248 4.5226 21 6 3.4987 3.3340 5.9080 22 6 2.9624 4.3523 6.6736 23 6 2.4849 4.0847 7.9431 24 6 2.5516 2.8004 8.4500 25 6 3.0924 1.7830 7.6863 26 6 3.5668 2.0499 6.4156 27 1 -0.3634 0.6229 -0.8172 28 1 -0.3633 -1.0194 -0.1308 29 1 -0.3633 0.3963 0.9482 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.8100 0.3855 -2.1649 33 1 -0.0523 2.8165 0.1995 34 1 -0.4141 2.0304 1.7956 35 1 0.7915 3.7844 3.0303 36 1 0.3803 4.8013 1.5757 37 1 3.6949 4.7331 2.1304 38 1 4.1488 3.0226 1.9397 39 1 4.8312 2.9412 4.2877 40 1 4.3779 4.6519 4.4785 41 1 2.9140 5.3565 6.2791 42 1 2.0627 4.8796 8.5399 43 1 2.1817 2.5920 9.4431 44 1 3.1449 0.7797 8.0826 45 1 3.9897 1.2552 5.8190 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:33 Heat of formation + Delta-G solvation = 0.520556 kcal Electronic energy + Delta-G solvation = -23401.064358 eV Core-core repulsion = 20191.075543 eV Total energy + Delta-G solvation = -3209.988815 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.23439 -40.16350 -38.19062 -35.92621 -33.98774 -32.87164 -31.76083 -30.49524 -29.65137 -27.41027 -26.65860 -24.43032 -23.73999 -23.44028 -22.17843 -21.58070 -20.29788 -18.97489 -17.88445 -17.59340 -16.95474 -16.74839 -16.66714 -16.03649 -15.87005 -15.60628 -15.01168 -14.74921 -14.46635 -14.24590 -14.13397 -13.94549 -13.77162 -13.62230 -13.17464 -13.02831 -12.95975 -12.75273 -12.66120 -12.41799 -12.14204 -11.88838 -11.80616 -11.78584 -11.47593 -11.11079 -11.05081 -10.86072 -10.59778 -10.33049 -9.79304 -9.72399 -9.43616 -8.28838 -6.27326 0.38312 0.52836 1.30558 1.35120 1.44687 2.34536 2.66235 3.04081 3.19485 3.33422 3.73495 3.93576 3.95173 4.07726 4.18051 4.30489 4.34552 4.36079 4.39334 4.44310 4.49691 4.54609 4.55495 4.66015 4.69919 4.73676 4.79522 4.81513 4.89248 4.91735 5.08057 5.10344 5.11056 5.18667 5.19625 5.35539 5.44551 5.52554 5.58087 5.62883 5.73258 5.79305 5.84976 6.12903 6.18274 6.38262 6.69493 6.80715 7.37021 8.86965 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020337 B = 0.004055 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.484595 B = 6903.935287 C = 7217.518006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.162 3.838 4 H 0.000 1.000 5 C -0.515 4.515 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.942 5.942 9 Si 0.920 3.080 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.228 1.228 13 N -0.465 5.465 14 C -0.003 4.003 15 C -0.118 4.118 16 C 0.038 3.962 17 H 0.076 0.924 18 C 0.087 3.913 19 O -0.376 6.376 20 C 0.098 3.902 21 C -0.100 4.100 22 C -0.109 4.109 23 C -0.126 4.126 24 C -0.119 4.119 25 C -0.131 4.131 26 C -0.120 4.120 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.028 0.972 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.135 0.865 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.139 0.861 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 7.778 14.768 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C 0.053 3.947 4 H 0.017 0.983 5 C -0.553 4.553 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.582 5.582 9 Si 0.744 3.256 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.151 1.151 13 N -0.188 5.188 14 C -0.132 4.132 15 C -0.156 4.156 16 C -0.072 4.072 17 H 0.094 0.906 18 C 0.011 3.989 19 O -0.296 6.296 20 C 0.022 3.978 21 C -0.100 4.100 22 C -0.127 4.127 23 C -0.144 4.144 24 C -0.137 4.137 25 C -0.148 4.148 26 C -0.139 4.139 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.153 0.847 42 H 0.168 0.832 43 H 0.167 0.833 44 H 0.156 0.844 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.532 7.140 15.199 19.309 hybrid contribution 0.773 -0.056 -2.095 2.234 sum -8.759 7.084 13.104 17.280 Atomic orbital electron populations 1.21913 0.95086 1.01400 1.01894 1.21729 0.95767 0.97803 0.99700 1.20070 0.94033 0.92605 0.87959 0.98254 1.21302 0.91277 1.41328 1.01358 0.93558 1.25683 0.95746 0.94425 1.01807 1.70104 1.13338 1.46241 1.28543 0.86273 0.81908 0.77702 0.79687 1.20374 1.21565 1.15090 1.68874 1.04883 1.12702 1.32329 1.23828 0.93320 0.96263 0.99801 1.23056 0.93726 0.97699 1.01113 1.23178 0.95168 0.91656 0.97216 0.90649 1.22206 0.96590 0.98472 0.81663 1.87923 1.35258 1.91047 1.15342 1.21341 0.89731 1.00364 0.86410 1.19711 1.01208 0.94607 0.94480 1.21278 0.97412 0.99170 0.94847 1.21489 0.99565 0.97851 0.95459 1.21544 0.98519 0.92831 1.00795 1.21412 0.98854 1.00641 0.93941 1.21242 0.99932 0.96064 0.96618 0.93304 0.92476 0.91458 0.94184 0.93924 0.92767 0.91758 0.89522 0.88708 0.89228 0.92125 0.95413 0.94259 0.91300 0.84734 0.83222 0.83288 0.84355 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 8.87 71.98 0.64 -4.35 16 2 C -0.11 -4.91 4.85 30.59 0.15 -4.76 16 3 C 0.16 7.58 0.90 44.17 0.04 7.62 16 4 H 0.00 0.00 6.17 -2.38 -0.01 -0.02 16 5 C -0.51 -29.09 8.46 25.60 0.22 -28.87 16 6 H 0.05 2.90 5.59 -2.91 -0.02 2.89 16 7 C 0.02 1.23 5.34 84.66 0.45 1.68 16 8 N -0.94 -58.77 13.96 21.45 0.30 -58.47 16 9 Si 0.92 43.62 25.76 68.60 1.77 45.39 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 12 H -0.23 -9.86 5.45 99.48 0.54 -9.32 16 13 N -0.47 -19.39 5.91 -881.26 -5.21 -24.60 16 14 C 0.00 -0.11 5.61 83.58 0.47 0.36 16 15 C -0.12 -3.56 7.83 30.94 0.24 -3.32 16 16 C 0.04 1.42 2.86 42.19 0.12 1.54 16 17 H 0.08 2.98 7.89 -2.39 -0.02 2.96 16 18 C 0.09 3.32 6.17 71.98 0.44 3.76 16 19 O -0.38 -13.54 8.77 -148.98 -1.31 -14.85 16 20 C 0.10 3.00 6.06 71.23 0.43 3.43 16 21 C -0.10 -2.79 5.51 -19.87 -0.11 -2.90 16 22 C -0.11 -2.48 9.70 22.27 0.22 -2.27 16 23 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 24 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 25 C -0.13 -2.90 10.05 22.27 0.22 -2.68 16 26 C -0.12 -3.34 9.70 22.27 0.22 -3.13 16 27 H 0.05 1.58 8.12 -2.39 -0.02 1.57 16 28 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.07 2.15 5.67 -2.39 -0.01 2.14 16 30 H 0.04 1.83 4.92 -2.39 -0.01 1.82 16 31 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 33 H 0.06 2.01 7.53 -2.39 -0.02 1.99 16 34 H 0.09 2.60 6.90 -2.39 -0.02 2.59 16 35 H 0.09 2.97 6.91 -2.39 -0.02 2.95 16 36 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.03 1.29 5.93 -2.39 -0.01 1.27 16 39 H 0.04 1.30 8.09 -2.39 -0.02 1.28 16 40 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 41 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 42 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 43 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 44 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 45 H 0.11 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -68.02 349.06 0.54 -67.48 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.79 Total: 23.02 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 4.20 Total: -37.97 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -4.91 Total: -83.07 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.31 Total: -14.85 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.77 Total: 45.39 kcal Total: -68.02 0.54 -67.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.997 kcal (2) G-P(sol) polarization free energy of solvation -68.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds