Wall clock time and date at job start Tue Mar 31 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47186 * 2 1 4 4 H 1.08996 * 109.47191 * 55.00760 * 3 2 1 5 5 C 1.50700 * 109.47151 * 175.00352 * 3 2 1 6 6 H 1.08004 * 119.99971 * 120.12386 * 5 3 2 7 7 C 1.37877 * 120.00049 * 300.12408 * 5 3 2 8 8 N 1.31515 * 119.99972 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00098 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46969 * 89.99660 * 9 7 5 11 11 H 1.48496 * 109.47202 * 209.99918 * 9 7 5 12 12 H 1.48503 * 109.46902 * 330.00038 * 9 7 5 13 13 N 1.46896 * 109.47483 * 295.00388 * 3 2 1 14 14 C 1.47479 * 111.00043 * 285.95589 * 13 3 2 15 15 C 1.53514 * 87.93553 * 221.29263 * 14 13 3 16 16 C 1.47482 * 111.00655 * 189.98330 * 13 3 2 17 17 H 1.09008 * 113.46786 * 23.87379 * 16 13 3 18 18 C 1.52998 * 113.47589 * 253.47475 * 16 13 3 19 19 O 1.42898 * 109.46886 * 294.99328 * 18 16 13 20 20 C 1.42897 * 113.99858 * 180.02562 * 19 18 16 21 21 C 1.50707 * 109.46930 * 179.97438 * 20 19 18 22 22 C 1.38233 * 119.99828 * 90.00000 * 21 20 19 23 23 C 1.38234 * 120.00061 * 179.97438 * 22 21 20 24 24 C 1.38241 * 119.99694 * 0.02562 * 23 22 21 25 25 C 1.38230 * 120.00150 * 0.25234 * 24 23 22 26 26 C 1.38234 * 120.00064 * 269.97666 * 21 20 19 27 27 H 1.08995 * 109.47462 * 59.99354 * 1 2 3 28 28 H 1.09004 * 109.47250 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46807 * 299.99588 * 1 2 3 30 30 H 1.09003 * 109.46807 * 240.00412 * 2 1 3 31 31 H 1.08995 * 109.47462 * 120.00646 * 2 1 3 32 32 H 0.97004 * 119.99921 * 179.97438 * 8 7 5 33 33 H 1.09004 * 113.47720 * 336.05861 * 14 13 3 34 34 H 1.09000 * 113.47998 * 106.46634 * 14 13 3 35 35 H 1.09003 * 114.16883 * 272.38057 * 15 14 13 36 36 H 1.09001 * 114.17046 * 139.66897 * 15 14 13 37 37 H 1.09002 * 109.47046 * 174.99953 * 18 16 13 38 38 H 1.08997 * 109.47089 * 54.99543 * 18 16 13 39 39 H 1.08998 * 109.47367 * 60.00427 * 20 19 18 40 40 H 1.09003 * 109.47159 * 299.99855 * 20 19 18 41 41 H 1.08001 * 120.00356 * 359.97438 * 22 21 20 42 42 H 1.07998 * 120.00166 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.99786 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00188 * 179.72970 * 25 24 23 45 45 H 1.07998 * 120.00003 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1237 6 1 4.1471 1.8906 -0.6515 7 6 4.1434 0.8760 1.2266 8 7 3.4065 0.3329 2.1708 9 14 6.0052 0.8776 1.3797 10 1 6.4428 2.1091 2.0848 11 1 6.4395 -0.3150 2.1505 12 1 6.6132 0.8401 0.0253 13 7 1.6513 2.0993 -1.2551 14 6 2.4734 1.6171 -2.3806 15 6 2.5423 3.0673 -2.8792 16 6 2.3217 3.4052 -1.3980 17 1 3.2469 3.4830 -0.8269 18 6 1.3881 4.5970 -1.1771 19 8 0.3937 4.6197 -2.2031 20 6 -0.5341 5.7005 -2.0894 21 6 -1.5314 5.6271 -3.2169 22 6 -2.7023 4.9097 -3.0583 23 6 -3.6174 4.8428 -4.0923 24 6 -3.3611 5.4928 -5.2851 25 6 -2.1876 6.2054 -5.4457 26 6 -1.2754 6.2775 -4.4095 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8297 -0.0672 2.9466 33 1 3.4396 1.2174 -2.0727 34 1 1.9371 0.9499 -3.0555 35 1 1.7168 3.3551 -3.5303 36 1 3.5191 3.3613 -3.2634 37 1 1.9649 5.5213 -1.2096 38 1 0.9046 4.5043 -0.2046 39 1 0.0030 6.6475 -2.1411 40 1 -1.0575 5.6312 -1.1358 41 1 -2.9023 4.4015 -2.1266 42 1 -4.5320 4.2820 -3.9685 43 1 -4.0758 5.4402 -6.0931 44 1 -1.9854 6.7096 -6.3792 45 1 -0.3610 6.8386 -4.5332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:36 Heat of formation + Delta-G solvation = 15.299317 kcal Electronic energy + Delta-G solvation = -23273.865576 eV Core-core repulsion = 20064.517617 eV Total energy + Delta-G solvation = -3209.347959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.62067 -39.20541 -36.95187 -33.91233 -31.95993 -31.49222 -30.92544 -28.42366 -27.93088 -25.62456 -25.46270 -22.64769 -22.59939 -22.30983 -21.27815 -19.55162 -18.79367 -16.94988 -16.35283 -15.94136 -15.78792 -15.38030 -15.24390 -14.62448 -14.44347 -14.09079 -13.49312 -13.32494 -13.20794 -12.85341 -12.74336 -12.42148 -12.02107 -11.73651 -11.58319 -11.48948 -11.33491 -11.07271 -11.00736 -10.85242 -10.74604 -10.53803 -9.98344 -9.78413 -9.71173 -9.63941 -9.32704 -9.22304 -8.97156 -8.93774 -8.83045 -8.36552 -7.44066 -6.03192 -4.15536 1.26086 1.38102 3.23839 3.31897 3.33915 3.62873 4.30124 4.35923 4.80527 4.88335 4.98228 5.07732 5.13786 5.20887 5.29412 5.40570 5.44293 5.52840 5.63701 5.72103 5.86453 5.94850 6.01640 6.10800 6.20987 6.34013 6.40947 6.45385 6.45963 6.51061 6.55724 6.61696 6.62026 6.71276 6.77161 6.90922 6.95687 7.12349 7.19895 7.26206 7.53757 7.60259 7.70732 8.01538 8.11477 8.14145 8.43490 8.96230 9.51060 10.97440 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025223 B = 0.003672 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.843090 B = 7623.281352 C = 8105.759393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.179 3.821 4 H 0.036 0.964 5 C -0.548 4.548 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.462 5.462 14 C 0.002 3.998 15 C -0.141 4.141 16 C 0.028 3.972 17 H 0.106 0.894 18 C 0.083 3.917 19 O -0.363 6.363 20 C 0.099 3.901 21 C -0.080 4.080 22 C -0.096 4.096 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.101 4.101 27 H 0.048 0.952 28 H 0.024 0.976 29 H 0.037 0.963 30 H 0.029 0.971 31 H 0.091 0.909 32 H 0.261 0.739 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.041 0.959 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.223 10.578 -10.704 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.072 3.928 4 H 0.054 0.946 5 C -0.587 4.587 6 H 0.082 0.918 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.184 5.184 14 C -0.127 4.127 15 C -0.179 4.179 16 C -0.082 4.082 17 H 0.124 0.876 18 C 0.006 3.994 19 O -0.282 6.282 20 C 0.022 3.978 21 C -0.080 4.080 22 C -0.114 4.114 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.119 4.119 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.962 10.258 -10.633 17.819 hybrid contribution 1.938 0.050 0.661 2.049 sum -8.023 10.308 -9.972 16.434 Atomic orbital electron populations 1.21709 0.98929 0.98369 1.00546 1.21474 0.92179 0.99063 1.01751 1.19679 0.93275 0.91859 0.88035 0.94572 1.21738 0.92701 1.38508 1.05733 0.91798 1.24922 0.97822 0.94909 0.95659 1.69890 1.34843 1.37807 1.09417 0.86686 0.86101 0.77598 0.78189 1.20699 1.21177 1.19910 1.69088 1.42548 1.01635 1.05142 1.23641 0.98993 0.95461 0.94603 1.23099 1.00624 0.97728 0.96464 1.23480 0.96511 0.91610 0.96590 0.87620 1.22310 0.89406 0.97343 0.90344 1.88042 1.41996 1.47788 1.50360 1.21235 0.90147 0.90836 0.95559 1.19684 0.94928 0.98078 0.95330 1.21126 0.93617 0.97281 0.99381 1.21145 0.99594 0.99880 0.93632 1.21148 0.97378 0.97838 0.97495 1.21107 0.94565 1.00014 0.98772 1.21061 0.98940 0.99283 0.92630 0.93328 0.95639 0.94359 0.95178 0.89116 0.92875 0.89616 0.92380 0.89186 0.92713 0.94090 0.93357 0.93182 0.92872 0.85805 0.86075 0.86302 0.86188 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.80 37.16 0.36 -2.59 16 2 C -0.11 -2.58 5.28 -26.74 -0.14 -2.72 16 3 C 0.18 4.42 2.01 -68.87 -0.14 4.29 16 4 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 5 C -0.55 -14.19 6.22 -34.44 -0.21 -14.40 16 6 H 0.06 1.62 5.08 -52.48 -0.27 1.36 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.51 11.29 55.43 0.63 -23.88 16 9 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.46 -10.05 5.66 -229.90 -1.30 -11.35 16 14 C 0.00 0.04 6.68 -7.55 -0.05 -0.01 16 15 C -0.14 -2.55 7.83 -26.20 -0.21 -2.75 16 16 C 0.03 0.54 3.38 -71.44 -0.24 0.30 16 17 H 0.11 2.24 5.88 -51.92 -0.31 1.93 16 18 C 0.08 1.41 6.28 37.16 0.23 1.65 16 19 O -0.36 -6.09 8.77 -35.23 -0.31 -6.39 16 20 C 0.10 1.33 6.06 36.01 0.22 1.55 16 21 C -0.08 -1.04 5.51 -104.62 -0.58 -1.62 16 22 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 23 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 24 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 25 C -0.13 -1.32 10.05 -39.59 -0.40 -1.71 16 26 C -0.10 -1.18 9.70 -39.58 -0.38 -1.56 16 27 H 0.05 1.03 7.75 -51.93 -0.40 0.62 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.72 7.55 -51.93 -0.39 0.33 16 31 H 0.09 2.44 5.94 -51.93 -0.31 2.13 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.09 1.89 5.56 -51.93 -0.29 1.60 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.63 6.91 -51.93 -0.36 1.27 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 41 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -28.25 356.89 -10.80 -39.06 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.37 Total: 4.42 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -2.81 Total: -22.80 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.67 Total: -35.24 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.31 Total: -6.39 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.25 -10.80 -39.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.358 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds