Wall clock time and date at job start Tue Mar 31 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47186 * 2 1 4 4 H 1.08996 * 109.47191 * 55.00760 * 3 2 1 5 5 C 1.50700 * 109.47151 * 175.00352 * 3 2 1 6 6 H 1.08004 * 119.99971 * 120.12386 * 5 3 2 7 7 C 1.37877 * 120.00049 * 300.12408 * 5 3 2 8 8 N 1.31515 * 119.99972 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00098 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46969 * 89.99660 * 9 7 5 11 11 H 1.48496 * 109.47202 * 209.99918 * 9 7 5 12 12 H 1.48503 * 109.46902 * 330.00038 * 9 7 5 13 13 N 1.46896 * 109.47483 * 295.00388 * 3 2 1 14 14 C 1.47479 * 111.00043 * 285.95589 * 13 3 2 15 15 C 1.53514 * 87.93553 * 221.29263 * 14 13 3 16 16 C 1.47482 * 111.00655 * 189.98330 * 13 3 2 17 17 H 1.09008 * 113.46786 * 23.87379 * 16 13 3 18 18 C 1.52998 * 113.47589 * 253.47475 * 16 13 3 19 19 O 1.42898 * 109.46886 * 294.99328 * 18 16 13 20 20 C 1.42897 * 113.99858 * 180.02562 * 19 18 16 21 21 C 1.50707 * 109.46930 * 179.97438 * 20 19 18 22 22 C 1.38233 * 119.99828 * 90.00000 * 21 20 19 23 23 C 1.38234 * 120.00061 * 179.97438 * 22 21 20 24 24 C 1.38241 * 119.99694 * 0.02562 * 23 22 21 25 25 C 1.38230 * 120.00150 * 0.25234 * 24 23 22 26 26 C 1.38234 * 120.00064 * 269.97666 * 21 20 19 27 27 H 1.08995 * 109.47462 * 59.99354 * 1 2 3 28 28 H 1.09004 * 109.47250 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46807 * 299.99588 * 1 2 3 30 30 H 1.09003 * 109.46807 * 240.00412 * 2 1 3 31 31 H 1.08995 * 109.47462 * 120.00646 * 2 1 3 32 32 H 0.97004 * 119.99921 * 179.97438 * 8 7 5 33 33 H 1.09004 * 113.47720 * 336.05861 * 14 13 3 34 34 H 1.09000 * 113.47998 * 106.46634 * 14 13 3 35 35 H 1.09003 * 114.16883 * 272.38057 * 15 14 13 36 36 H 1.09001 * 114.17046 * 139.66897 * 15 14 13 37 37 H 1.09002 * 109.47046 * 174.99953 * 18 16 13 38 38 H 1.08997 * 109.47089 * 54.99543 * 18 16 13 39 39 H 1.08998 * 109.47367 * 60.00427 * 20 19 18 40 40 H 1.09003 * 109.47159 * 299.99855 * 20 19 18 41 41 H 1.08001 * 120.00356 * 359.97438 * 22 21 20 42 42 H 1.07998 * 120.00166 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.99786 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00188 * 179.72970 * 25 24 23 45 45 H 1.07998 * 120.00003 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1237 6 1 4.1471 1.8906 -0.6515 7 6 4.1434 0.8760 1.2266 8 7 3.4065 0.3329 2.1708 9 14 6.0052 0.8776 1.3797 10 1 6.4428 2.1091 2.0848 11 1 6.4395 -0.3150 2.1505 12 1 6.6132 0.8401 0.0253 13 7 1.6513 2.0993 -1.2551 14 6 2.4734 1.6171 -2.3806 15 6 2.5423 3.0673 -2.8792 16 6 2.3217 3.4052 -1.3980 17 1 3.2469 3.4830 -0.8269 18 6 1.3881 4.5970 -1.1771 19 8 0.3937 4.6197 -2.2031 20 6 -0.5341 5.7005 -2.0894 21 6 -1.5314 5.6271 -3.2169 22 6 -2.7023 4.9097 -3.0583 23 6 -3.6174 4.8428 -4.0923 24 6 -3.3611 5.4928 -5.2851 25 6 -2.1876 6.2054 -5.4457 26 6 -1.2754 6.2775 -4.4095 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8297 -0.0672 2.9466 33 1 3.4396 1.2174 -2.0727 34 1 1.9371 0.9499 -3.0555 35 1 1.7168 3.3551 -3.5303 36 1 3.5191 3.3613 -3.2634 37 1 1.9649 5.5213 -1.2096 38 1 0.9046 4.5043 -0.2046 39 1 0.0030 6.6475 -2.1411 40 1 -1.0575 5.6312 -1.1358 41 1 -2.9023 4.4015 -2.1266 42 1 -4.5320 4.2820 -3.9685 43 1 -4.0758 5.4402 -6.0931 44 1 -1.9854 6.7096 -6.3792 45 1 -0.3610 6.8386 -4.5332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:36 Heat of formation + Delta-G solvation = 0.000007 kcal Electronic energy + Delta-G solvation = -23274.529004 eV Core-core repulsion = 20064.517617 eV Total energy + Delta-G solvation = -3210.011387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.20046 -40.14989 -38.19577 -35.79044 -33.52790 -32.85657 -31.74984 -30.07939 -29.44658 -27.38441 -26.64317 -24.51186 -23.84202 -23.43230 -22.16750 -21.40746 -20.51028 -18.07850 -17.86623 -17.50044 -16.96528 -16.81032 -16.46828 -16.05380 -15.70414 -15.61892 -14.96346 -14.77760 -14.37592 -14.23603 -14.03732 -13.64719 -13.54687 -13.34526 -13.11595 -12.96685 -12.87490 -12.75557 -12.50368 -12.34637 -11.87352 -11.83665 -11.75791 -11.61053 -11.55644 -11.40099 -10.97053 -10.91229 -10.42576 -10.39673 -9.78167 -9.70921 -9.24153 -8.05588 -6.25003 0.39447 0.54020 1.39233 1.41653 1.49987 2.40848 2.67684 3.15372 3.23082 3.51127 3.84111 3.95876 3.97586 4.19288 4.20439 4.32385 4.38277 4.43035 4.47999 4.54867 4.64919 4.68179 4.70961 4.72153 4.81183 4.82764 4.88772 5.03231 5.04325 5.09319 5.12116 5.13520 5.19648 5.34284 5.35979 5.55231 5.58919 5.60786 5.64089 5.71083 5.73611 6.03790 6.13128 6.13993 6.22056 6.39118 6.49806 6.98704 7.44877 8.93291 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025223 B = 0.003672 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.843090 B = 7623.281352 C = 8105.759393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.188 3.812 4 H -0.002 1.002 5 C -0.551 4.551 6 H 0.068 0.932 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.469 5.469 14 C 0.000 4.000 15 C -0.116 4.116 16 C 0.022 3.978 17 H 0.088 0.912 18 C 0.090 3.910 19 O -0.379 6.379 20 C 0.097 3.903 21 C -0.102 4.102 22 C -0.118 4.118 23 C -0.132 4.132 24 C -0.121 4.121 25 C -0.129 4.129 26 C -0.111 4.111 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.031 0.969 30 H 0.026 0.974 31 H 0.063 0.937 32 H 0.260 0.740 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.118 0.882 42 H 0.139 0.861 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 11.706 -12.894 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.079 3.921 4 H 0.016 0.984 5 C -0.590 4.590 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.192 5.192 14 C -0.129 4.129 15 C -0.154 4.154 16 C -0.088 4.088 17 H 0.106 0.894 18 C 0.013 3.987 19 O -0.299 6.299 20 C 0.021 3.979 21 C -0.102 4.102 22 C -0.136 4.136 23 C -0.150 4.150 24 C -0.139 4.139 25 C -0.147 4.147 26 C -0.129 4.129 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.136 0.864 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.998 11.400 -12.837 19.867 hybrid contribution 1.861 -0.266 1.284 2.277 sum -8.136 11.134 -11.553 17.990 Atomic orbital electron populations 1.21560 0.96729 0.99688 1.00297 1.21342 0.94133 0.98495 1.00097 1.19434 0.92597 0.91754 0.88266 0.98435 1.21996 0.93461 1.37857 1.05684 0.91384 1.25663 1.01948 0.94817 0.95511 1.70028 1.36445 1.38761 1.09912 0.85695 0.81121 0.77411 0.78270 1.20274 1.21334 1.19139 1.69076 1.43104 1.02896 1.04083 1.23618 0.97875 0.97204 0.94251 1.22954 1.01915 0.95218 0.95305 1.23478 0.96306 0.91470 0.97546 0.89403 1.22145 0.89453 0.97301 0.89783 1.87989 1.42454 1.49516 1.49951 1.21378 0.89909 0.90602 0.95997 1.19765 0.95095 0.99402 0.95914 1.21262 0.94380 0.98004 0.99941 1.21427 0.99933 1.00047 0.93584 1.21534 0.97804 0.96789 0.97788 1.21473 0.94183 0.99636 0.99380 1.21288 0.99842 0.99293 0.92474 0.93051 0.93510 0.95000 0.95514 0.91857 0.93039 0.91315 0.91843 0.88787 0.90509 0.91419 0.94969 0.91278 0.93084 0.86443 0.84324 0.83577 0.83599 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 9.80 71.98 0.71 -4.68 16 2 C -0.10 -5.07 5.28 30.59 0.16 -4.91 16 3 C 0.19 9.52 2.01 44.17 0.09 9.61 16 4 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 5 C -0.55 -28.99 6.22 25.60 0.16 -28.83 16 6 H 0.07 3.46 5.08 -2.91 -0.01 3.45 16 7 C 0.02 1.11 5.29 84.65 0.45 1.56 16 8 N -0.91 -52.04 11.29 21.45 0.24 -51.79 16 9 Si 0.95 42.56 29.54 68.60 2.03 44.59 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 N -0.47 -20.57 5.66 -881.28 -4.99 -25.55 16 14 C 0.00 -0.02 6.68 83.57 0.56 0.54 16 15 C -0.12 -3.98 7.83 30.94 0.24 -3.74 16 16 C 0.02 0.84 3.38 42.18 0.14 0.98 16 17 H 0.09 3.72 5.88 -2.38 -0.01 3.71 16 18 C 0.09 3.02 6.28 71.98 0.45 3.47 16 19 O -0.38 -12.40 8.77 -148.98 -1.31 -13.70 16 20 C 0.10 2.54 6.06 71.24 0.43 2.97 16 21 C -0.10 -2.56 5.51 -19.86 -0.11 -2.66 16 22 C -0.12 -2.90 9.70 22.27 0.22 -2.68 16 23 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 24 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 25 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 26 C -0.11 -2.38 9.70 22.27 0.22 -2.16 16 27 H 0.05 2.16 7.75 -2.39 -0.02 2.14 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.03 1.30 7.55 -2.39 -0.02 1.28 16 31 H 0.06 3.51 5.94 -2.39 -0.01 3.49 16 32 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 33 H 0.07 3.01 5.56 -2.38 -0.01 3.00 16 34 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.09 3.20 6.91 -2.39 -0.02 3.18 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 40 H 0.05 1.32 8.09 -2.39 -0.02 1.30 16 41 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 44 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -61.19 356.89 1.31 -59.88 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.95 Total: 23.61 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 4.38 Total: -37.03 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -4.74 Total: -77.35 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -1.31 Total: -13.70 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -61.19 1.31 -59.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.879 kcal (2) G-P(sol) polarization free energy of solvation -61.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds