Wall clock time and date at job start Tue Mar 31 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47153 * 2 1 4 4 H 1.09000 * 109.47611 * 305.00180 * 3 2 1 5 5 C 1.50706 * 109.47238 * 184.99569 * 3 2 1 6 6 H 1.07999 * 120.00196 * 240.00405 * 5 3 2 7 7 C 1.37879 * 119.99394 * 60.00273 * 5 3 2 8 8 N 1.31514 * 120.00338 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99426 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47776 * 59.99746 * 9 7 5 11 11 H 1.48503 * 109.46851 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47028 * 299.99350 * 9 7 5 13 13 N 1.46902 * 109.47094 * 65.00184 * 3 2 1 14 14 C 1.47442 * 111.00300 * 69.87212 * 13 3 2 15 15 C 1.54319 * 107.23402 * 123.25983 * 14 13 3 16 16 C 1.55142 * 103.01769 * 22.28164 * 15 14 13 17 17 C 1.47845 * 111.00168 * 190.71697 * 13 3 2 18 18 H 1.09004 * 110.36867 * 332.46301 * 17 13 3 19 19 C 1.50701 * 110.37391 * 94.79920 * 17 13 3 20 20 C 1.38267 * 119.94303 * 39.73271 * 19 17 13 21 21 C 1.38145 * 120.05454 * 179.72111 * 20 19 17 22 22 C 1.38732 * 119.94210 * 0.54886 * 21 20 19 23 23 O 1.35902 * 120.05284 * 179.74772 * 22 21 20 24 24 C 1.42903 * 117.00369 * 359.97438 * 23 22 21 25 25 C 1.38724 * 119.89125 * 359.72275 * 22 21 20 26 26 C 1.38142 * 119.94403 * 0.02562 * 25 22 21 27 27 H 1.08993 * 109.47376 * 300.00152 * 1 2 3 28 28 H 1.09006 * 109.46634 * 60.00096 * 1 2 3 29 29 H 1.09000 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47159 * 239.99868 * 2 1 3 31 31 H 1.09001 * 109.46685 * 120.00374 * 2 1 3 32 32 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.88396 * 242.66573 * 14 13 3 34 34 H 1.08997 * 109.89005 * 3.68974 * 14 13 3 35 35 H 1.09003 * 110.70423 * 140.66298 * 15 14 13 36 36 H 1.08997 * 110.70540 * 263.72360 * 15 14 13 37 37 H 1.09005 * 110.98758 * 82.44063 * 16 15 14 38 38 H 1.08996 * 110.99029 * 206.21207 * 16 15 14 39 39 H 1.07997 * 119.97357 * 359.97438 * 20 19 17 40 40 H 1.07998 * 120.02863 * 180.26874 * 21 20 19 41 41 H 1.08991 * 109.47334 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.46460 * 300.00127 * 24 23 22 43 43 H 1.08998 * 109.47126 * 59.99317 * 24 23 22 44 44 H 1.07999 * 120.02924 * 180.02562 * 25 22 21 45 45 H 1.08002 * 119.97375 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1237 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8800 -1.3809 10 1 6.5967 0.1453 -0.2341 11 1 6.3979 0.2167 -2.6502 12 1 6.5005 2.2799 -1.3807 13 7 1.6514 2.0992 1.2553 14 6 2.4042 1.5462 2.3961 15 6 3.1299 2.7244 3.0792 16 6 2.2965 3.9544 2.6326 17 6 1.8982 3.5555 1.1899 18 1 2.7123 3.7716 0.4980 19 6 0.6458 4.2816 0.7714 20 6 -0.5823 3.8789 1.2627 21 6 -1.7312 4.5465 0.8851 22 6 -1.6533 5.6147 0.0034 23 8 -2.7828 6.2699 -0.3736 24 6 -4.0169 5.8048 0.1767 25 6 -0.4206 6.0133 -0.4925 26 6 0.7260 5.3457 -0.1079 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8294 -0.0618 -2.9494 33 1 1.7179 1.0752 3.0998 34 1 3.1309 0.8154 2.0415 35 1 3.1055 2.6155 4.1635 36 1 4.1574 2.8022 2.7240 37 1 1.4145 4.0775 3.2613 38 1 2.9041 4.8593 2.6346 39 1 -0.6429 3.0442 1.9454 40 1 -2.6898 4.2343 1.2725 41 1 -4.8370 6.4126 -0.2053 42 1 -4.1727 4.7644 -0.1087 43 1 -3.9823 5.8821 1.2634 44 1 -0.3573 6.8448 -1.1788 45 1 1.6859 5.6554 -0.4940 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:08 Heat of formation + Delta-G solvation = -28.359384 kcal Electronic energy + Delta-G solvation = -24037.351018 eV Core-core repulsion = 20826.109875 eV Total energy + Delta-G solvation = -3211.241143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14475 -40.09962 -38.03783 -35.85596 -33.57404 -32.11830 -31.83852 -31.07216 -28.82069 -28.07007 -27.42981 -24.83570 -23.76126 -23.00017 -22.41875 -21.05003 -20.40623 -19.00967 -18.38894 -17.45417 -16.98981 -16.55108 -16.34426 -16.16493 -15.50543 -14.97181 -14.77009 -14.67270 -14.58047 -14.29164 -14.05467 -13.74377 -13.50685 -13.42477 -13.11138 -12.90873 -12.72855 -12.67485 -12.52147 -12.23914 -12.05655 -11.97634 -11.76671 -11.71574 -11.48821 -11.47262 -11.41245 -11.22149 -10.88839 -10.39654 -9.81838 -8.90926 -8.87013 -7.99796 -6.20527 0.51463 0.60011 1.38373 1.39399 1.45923 2.41597 2.46281 2.89734 3.19136 3.51917 3.91944 4.01963 4.06005 4.07479 4.30288 4.37795 4.40542 4.44560 4.60160 4.61405 4.64026 4.69449 4.76310 4.77856 4.85398 4.89361 4.95160 5.03185 5.11225 5.20492 5.21534 5.26713 5.33604 5.42351 5.45844 5.50223 5.53269 5.62907 5.67676 5.81623 5.91707 5.93326 6.12872 6.24187 6.48501 6.55119 6.69904 7.02528 7.49412 8.95578 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017517 B = 0.004912 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.019335 B = 5699.530132 C = 5863.366627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.007 1.007 5 C -0.544 4.544 6 H 0.056 0.944 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.513 5.513 14 C 0.045 3.955 15 C -0.131 4.131 16 C -0.106 4.106 17 C 0.113 3.887 18 H 0.037 0.963 19 C -0.103 4.103 20 C -0.053 4.053 21 C -0.210 4.210 22 C 0.108 3.892 23 O -0.337 6.337 24 C 0.019 3.981 25 C -0.164 4.164 26 C -0.091 4.091 27 H 0.059 0.941 28 H 0.024 0.976 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.259 0.741 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.147 0.853 41 H 0.120 0.880 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.136 0.864 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.037 8.741 8.996 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.011 0.989 5 C -0.583 4.583 6 H 0.074 0.926 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.236 5.236 14 C -0.083 4.083 15 C -0.169 4.169 16 C -0.144 4.144 17 C 0.004 3.996 18 H 0.055 0.945 19 C -0.103 4.103 20 C -0.072 4.072 21 C -0.229 4.229 22 C 0.063 3.937 23 O -0.251 6.251 24 C -0.075 4.075 25 C -0.182 4.182 26 C -0.109 4.109 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.149 0.851 40 H 0.164 0.836 41 H 0.138 0.862 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.154 0.846 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.588 8.693 8.758 16.260 hybrid contribution 2.037 -0.353 -0.819 2.223 sum -8.551 8.341 7.938 14.342 Atomic orbital electron populations 1.21539 0.96543 0.99506 1.00407 1.21402 0.94304 0.98429 1.00076 1.19053 0.91594 0.91139 0.86525 0.98923 1.22031 0.93931 1.37206 1.05129 0.92588 1.25600 1.01413 0.95198 0.95690 1.70011 1.36196 1.39171 1.09838 0.85873 0.81937 0.78134 0.77267 1.19723 1.21305 1.20126 1.63696 1.54015 1.01678 1.04177 1.22707 0.95839 0.97231 0.92573 1.22720 0.98380 0.94797 1.01034 1.22653 0.99909 0.97730 0.94110 1.21257 0.92758 0.88736 0.96864 0.94478 1.19797 0.95397 0.96429 0.98726 1.20844 0.90815 0.97462 0.98060 1.21425 1.00274 0.98489 1.02689 1.19100 0.86823 0.92668 0.95115 1.86011 1.14553 1.56472 1.68047 1.23304 0.83189 1.01317 0.99679 1.20457 0.89873 1.03501 1.04408 1.20969 0.98183 0.95376 0.96412 0.92164 0.95644 0.93781 0.92314 0.95053 0.93172 0.91221 0.93587 0.89189 0.93047 0.90004 0.90622 0.85092 0.83570 0.86208 0.92365 0.91622 0.84623 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.80 71.98 0.71 -4.28 16 2 C -0.10 -4.96 5.21 30.59 0.16 -4.80 16 3 C 0.22 11.09 1.62 44.17 0.07 11.16 16 4 H -0.01 -0.42 8.07 -2.39 -0.02 -0.43 16 5 C -0.54 -28.82 6.24 25.60 0.16 -28.66 16 6 H 0.06 2.93 6.22 -2.91 -0.02 2.91 16 7 C 0.02 1.12 5.29 84.66 0.45 1.57 16 8 N -0.91 -52.54 11.29 21.45 0.24 -52.29 16 9 Si 0.94 43.44 29.54 68.60 2.03 45.46 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 N -0.51 -20.64 3.51 -844.30 -2.97 -23.61 16 14 C 0.04 1.64 5.33 86.65 0.46 2.10 16 15 C -0.13 -4.02 6.72 31.78 0.21 -3.80 16 16 C -0.11 -3.17 6.47 31.98 0.21 -2.96 16 17 C 0.11 4.21 2.37 44.64 0.11 4.32 16 18 H 0.04 1.64 6.98 -2.38 -0.02 1.62 16 19 C -0.10 -3.57 5.03 -19.85 -0.10 -3.67 16 20 C -0.05 -1.69 9.18 22.25 0.20 -1.49 16 21 C -0.21 -5.85 9.04 22.37 0.20 -5.65 16 22 C 0.11 3.15 6.69 22.50 0.15 3.30 16 23 O -0.34 -8.70 10.50 -92.45 -0.97 -9.67 16 24 C 0.02 0.32 9.81 113.37 1.11 1.43 16 25 C -0.16 -5.01 9.99 22.36 0.22 -4.79 16 26 C -0.09 -3.02 9.67 22.25 0.22 -2.81 16 27 H 0.06 2.27 7.75 -2.39 -0.02 2.25 16 28 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 3.21 5.95 -2.39 -0.01 3.19 16 31 H 0.03 1.46 7.04 -2.39 -0.02 1.44 16 32 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.05 1.96 5.67 -2.39 -0.01 1.95 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.05 1.70 7.73 -2.39 -0.02 1.68 16 37 H 0.08 2.21 7.92 -2.38 -0.02 2.19 16 38 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.13 4.05 7.74 -2.91 -0.02 4.03 16 40 H 0.15 3.19 6.30 -2.91 -0.02 3.18 16 41 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 43 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 44 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 45 H 0.12 3.98 8.04 -2.91 -0.02 3.96 16 Total: -1.00 -61.29 350.58 3.83 -57.46 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.95 Total: 21.68 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 4.54 Total: -39.03 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -2.73 Total: -75.90 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.97 Total: -9.67 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -61.29 3.83 -57.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.102 kcal (2) G-P(sol) polarization free energy of solvation -61.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds