Wall clock time and date at job start Tue Mar 31 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47223 * 2 1 4 4 H 1.08998 * 109.47514 * 179.24519 * 3 2 1 5 5 C 1.50706 * 109.47305 * 299.24254 * 3 2 1 6 6 H 1.07993 * 119.99884 * 119.99862 * 5 3 2 7 7 C 1.37872 * 119.99991 * 299.99885 * 5 3 2 8 8 N 1.31519 * 120.00210 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99982 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46958 * 90.00412 * 9 7 5 11 11 H 1.48498 * 109.46763 * 210.00085 * 9 7 5 12 12 H 1.48499 * 109.47053 * 329.99900 * 9 7 5 13 13 N 1.46897 * 109.47037 * 59.24380 * 3 2 1 14 14 C 1.47439 * 110.99972 * 58.06098 * 13 3 2 15 15 C 1.54321 * 107.23192 * 123.26040 * 14 13 3 16 16 C 1.55254 * 103.08658 * 22.20220 * 15 14 13 17 17 C 1.47850 * 111.00055 * 178.90663 * 13 3 2 18 18 H 1.08996 * 110.37231 * 332.57154 * 17 13 3 19 19 C 1.50700 * 110.37565 * 94.80478 * 17 13 3 20 20 C 1.38266 * 119.94215 * 218.44663 * 19 17 13 21 21 C 1.38141 * 120.05227 * 179.72660 * 20 19 17 22 22 C 1.38727 * 119.94684 * 0.27558 * 21 20 19 23 23 O 1.35901 * 120.05760 * 179.97438 * 22 21 20 24 24 C 1.42904 * 116.99931 * 179.97438 * 23 22 21 25 25 C 1.38733 * 119.88849 * 0.02562 * 22 21 20 26 26 C 1.38149 * 119.94355 * 359.97438 * 25 22 21 27 27 H 1.08999 * 109.47059 * 185.16699 * 1 2 3 28 28 H 1.08997 * 109.47072 * 305.16819 * 1 2 3 29 29 H 1.09002 * 109.46782 * 65.16887 * 1 2 3 30 30 H 1.09004 * 109.47067 * 240.00105 * 2 1 3 31 31 H 1.08996 * 109.47438 * 120.00643 * 2 1 3 32 32 H 0.96997 * 120.00127 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.88584 * 242.66142 * 14 13 3 34 34 H 1.09003 * 109.89012 * 3.85391 * 14 13 3 35 35 H 1.09005 * 110.70763 * 140.66899 * 15 14 13 36 36 H 1.09003 * 110.70281 * 263.72485 * 15 14 13 37 37 H 1.09009 * 111.09001 * 206.38401 * 16 15 14 38 38 H 1.09001 * 110.94449 * 82.53255 * 16 15 14 39 39 H 1.08004 * 119.97561 * 0.02562 * 20 19 17 40 40 H 1.07999 * 120.02866 * 180.25361 * 21 20 19 41 41 H 1.08995 * 109.47297 * 299.99942 * 24 23 22 42 42 H 1.09003 * 109.47147 * 60.00066 * 24 23 22 43 43 H 1.09001 * 109.47060 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.03147 * 179.97438 * 25 22 21 45 45 H 1.08000 * 119.97165 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0135 5 6 1.5531 2.1475 -1.2398 6 1 0.9311 3.0260 -1.1523 7 6 1.9018 1.6710 -2.4857 8 7 2.6589 0.6009 -2.5923 9 14 1.2976 2.5445 -4.0224 10 1 2.2804 3.5847 -4.4192 11 1 1.1466 1.5603 -5.1241 12 1 -0.0143 3.1828 -3.7456 13 7 1.5355 2.1402 1.1902 14 6 1.9545 1.4506 2.4242 15 6 2.7239 2.4767 3.2825 16 6 2.2105 3.8398 2.7452 17 6 2.0304 3.5326 1.2376 18 1 2.9845 3.6141 0.7171 19 6 1.0197 4.4697 0.6283 20 6 1.4441 5.5344 -0.1451 21 6 0.5194 6.3915 -0.7094 22 6 -0.8358 6.1867 -0.4950 23 8 -1.7475 7.0289 -1.0487 24 6 -3.1256 6.7568 -0.7859 25 6 -1.2589 5.1214 0.2865 26 6 -0.3301 4.2670 0.8487 27 1 -0.3633 -1.0235 0.0925 28 1 -0.3633 0.5919 0.8401 29 1 -0.3633 0.4316 -0.9327 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.9038 0.2654 -3.4688 33 1 1.0781 1.0963 2.9668 34 1 2.6050 0.6115 2.1775 35 1 2.4763 2.3596 4.3375 36 1 3.7985 2.3803 3.1273 37 1 2.9506 4.6255 2.8978 38 1 1.2593 4.1068 3.2056 39 1 2.4993 5.6932 -0.3121 40 1 0.8512 7.2206 -1.3168 41 1 -3.3779 5.7648 -1.1604 42 1 -3.3052 6.7961 0.2885 43 1 -3.7447 7.5023 -1.2849 44 1 -2.3133 4.9600 0.4553 45 1 -0.6590 3.4373 1.4568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:10 Heat of formation + Delta-G solvation = -22.539603 kcal Electronic energy + Delta-G solvation = -24466.780503 eV Core-core repulsion = 21255.791725 eV Total energy + Delta-G solvation = -3210.988778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14643 -40.07258 -37.95984 -36.05340 -33.43758 -32.14741 -31.79954 -30.88709 -28.85644 -27.99824 -27.33595 -25.16337 -23.76864 -22.99668 -22.36827 -21.08775 -20.22436 -18.96823 -18.24300 -17.20253 -17.11082 -16.55483 -16.50888 -15.99448 -15.51952 -15.25001 -14.76516 -14.63424 -14.56810 -14.26955 -13.97467 -13.90303 -13.67615 -13.27729 -13.03333 -12.86874 -12.83443 -12.67852 -12.44968 -12.35139 -12.06341 -11.91977 -11.77519 -11.66753 -11.51491 -11.44138 -11.32441 -11.14320 -10.71653 -10.41706 -9.75522 -8.87134 -8.73139 -8.03037 -6.07643 0.58156 0.67438 1.35553 1.38787 1.47966 2.44351 2.48323 2.95311 3.26587 3.48324 3.88398 4.01042 4.05857 4.10676 4.25195 4.34793 4.39873 4.42381 4.57472 4.65268 4.65631 4.67542 4.74487 4.77349 4.85957 4.89790 4.93613 5.00271 5.05720 5.10362 5.21796 5.28783 5.32802 5.46159 5.47852 5.50272 5.52915 5.64046 5.80735 5.85250 5.93744 5.95229 6.00914 6.39256 6.53836 6.58674 6.82731 7.08075 7.59368 9.03133 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.007975 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.597056 B = 3510.268761 C = 4925.220087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.108 4.108 3 C 0.224 3.776 4 H -0.046 1.046 5 C -0.483 4.483 6 H 0.068 0.932 7 C 0.016 3.984 8 N -0.922 5.922 9 Si 0.930 3.070 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.514 5.514 14 C 0.036 3.964 15 C -0.132 4.132 16 C -0.110 4.110 17 C 0.122 3.878 18 H 0.030 0.970 19 C -0.077 4.077 20 C -0.091 4.091 21 C -0.168 4.168 22 C 0.100 3.900 23 O -0.339 6.339 24 C 0.020 3.980 25 C -0.213 4.213 26 C -0.054 4.054 27 H 0.034 0.966 28 H 0.057 0.943 29 H 0.027 0.973 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.255 0.745 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.120 0.880 44 H 0.142 0.858 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.773 8.715 10.240 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.146 4.146 3 C 0.117 3.883 4 H -0.028 1.028 5 C -0.522 4.522 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.564 5.564 9 Si 0.758 3.242 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.238 5.238 14 C -0.092 4.092 15 C -0.170 4.170 16 C -0.148 4.148 17 C 0.013 3.987 18 H 0.048 0.952 19 C -0.078 4.078 20 C -0.109 4.109 21 C -0.187 4.187 22 C 0.056 3.944 23 O -0.253 6.253 24 C -0.074 4.074 25 C -0.231 4.231 26 C -0.072 4.072 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.138 0.862 44 H 0.160 0.840 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.217 8.747 9.938 15.079 hybrid contribution 0.842 -0.176 -1.436 1.674 sum -6.375 8.571 8.502 13.652 Atomic orbital electron populations 1.21291 0.95800 0.98430 1.00740 1.21460 0.96394 0.97624 0.99123 1.19150 0.89839 0.91556 0.87784 1.02834 1.21471 1.29288 1.11298 0.90111 0.91393 1.25433 0.95981 0.95720 1.01001 1.70002 1.38701 1.24120 1.23585 0.85964 0.78791 0.78465 0.80945 1.20725 1.21351 1.20095 1.63468 1.57645 1.00802 1.01890 1.22872 0.98523 0.96543 0.91279 1.22768 0.99332 0.94311 1.00593 1.22744 1.02012 0.97431 0.92642 1.21177 0.93435 0.88479 0.95579 0.95161 1.19573 0.94650 0.94991 0.98559 1.20909 0.99429 0.94398 0.96197 1.20449 0.90258 1.02947 1.05015 1.19090 0.89681 0.90948 0.94719 1.85990 1.17458 1.51235 1.70658 1.23278 0.78421 1.03097 1.02595 1.21392 1.01024 0.97402 1.03298 1.20791 0.91988 0.96785 0.97662 0.94703 0.92385 0.95355 0.92364 0.95310 0.93566 0.90342 0.94511 0.88644 0.92268 0.90036 0.90054 0.85637 0.85006 0.92869 0.91461 0.86175 0.83999 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.50 9.49 71.98 0.68 -3.82 16 2 C -0.11 -5.09 5.18 30.59 0.16 -4.93 16 3 C 0.22 10.95 1.38 44.17 0.06 11.02 16 4 H -0.05 -2.58 8.06 -2.39 -0.02 -2.60 16 5 C -0.48 -25.75 6.92 25.60 0.18 -25.58 16 6 H 0.07 3.65 5.20 -2.91 -0.02 3.64 16 7 C 0.02 0.89 5.30 84.65 0.45 1.34 16 8 N -0.92 -53.63 11.31 21.45 0.24 -53.39 16 9 Si 0.93 45.57 29.54 68.60 2.03 47.59 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 13 N -0.51 -20.25 3.06 -844.30 -2.59 -22.84 16 14 C 0.04 1.18 6.15 86.65 0.53 1.71 16 15 C -0.13 -3.47 6.94 31.82 0.22 -3.25 16 16 C -0.11 -3.04 6.49 32.02 0.21 -2.83 16 17 C 0.12 4.46 2.23 44.64 0.10 4.56 16 18 H 0.03 1.28 7.65 -2.39 -0.02 1.26 16 19 C -0.08 -2.80 2.82 -19.85 -0.06 -2.85 16 20 C -0.09 -3.24 9.59 22.25 0.21 -3.02 16 21 C -0.17 -5.75 9.99 22.36 0.22 -5.53 16 22 C 0.10 3.34 6.69 22.51 0.15 3.49 16 23 O -0.34 -10.10 10.50 -92.43 -0.97 -11.07 16 24 C 0.02 0.41 9.81 113.37 1.11 1.52 16 25 C -0.21 -6.76 9.04 22.37 0.20 -6.56 16 26 C -0.05 -1.86 8.93 22.25 0.20 -1.66 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 2.31 7.42 -2.39 -0.02 2.29 16 29 H 0.03 1.32 7.43 -2.39 -0.02 1.31 16 30 H 0.06 3.16 6.05 -2.39 -0.01 3.15 16 31 H 0.03 1.24 6.41 -2.39 -0.02 1.22 16 32 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.04 1.32 6.21 -2.39 -0.01 1.31 16 35 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.08 2.09 7.95 -2.39 -0.02 2.07 16 39 H 0.13 4.20 8.05 -2.91 -0.02 4.18 16 40 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 41 H 0.05 1.08 7.66 -2.39 -0.02 1.06 16 42 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 43 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.14 3.69 6.30 -2.91 -0.02 3.67 16 45 H 0.13 4.36 7.71 -2.91 -0.02 4.34 16 Total: -1.00 -62.86 347.65 4.30 -58.56 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.96 Total: 17.54 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 4.63 Total: -36.39 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -2.34 Total: -76.23 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.97 Total: -11.07 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -62.86 4.30 -58.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.016 kcal (2) G-P(sol) polarization free energy of solvation -62.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds