Wall clock time and date at job start Tue Mar 31 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47572 * 2 1 4 4 H 1.09002 * 109.47162 * 56.06373 * 3 2 1 5 5 C 1.50702 * 109.47170 * 176.06341 * 3 2 1 6 6 H 1.08000 * 119.99937 * 60.62867 * 5 3 2 7 7 C 1.37878 * 120.00006 * 240.62626 * 5 3 2 8 8 N 1.31514 * 120.00094 * 188.35795 * 7 5 3 9 9 Si 1.86803 * 120.00109 * 8.35328 * 7 5 3 10 10 H 1.48500 * 109.47259 * 275.52122 * 9 7 5 11 11 H 1.48508 * 109.46900 * 35.52049 * 9 7 5 12 12 H 1.48495 * 109.47098 * 155.51904 * 9 7 5 13 13 N 1.46898 * 109.47026 * 296.06734 * 3 2 1 14 14 C 1.48565 * 110.99713 * 290.41541 * 13 3 2 15 15 C 1.54384 * 104.59152 * 200.95980 * 14 13 3 16 16 C 1.54259 * 105.06108 * 23.85430 * 15 14 13 17 17 C 1.48561 * 110.99921 * 174.99737 * 13 3 2 18 18 H 1.09006 * 110.40883 * 40.26357 * 17 13 3 19 19 C 1.50696 * 110.41313 * 277.93297 * 17 13 3 20 20 C 1.38260 * 119.94482 * 319.73119 * 19 17 13 21 21 C 1.38148 * 120.05445 * 179.72401 * 20 19 17 22 22 C 1.38732 * 119.94314 * 0.56873 * 21 20 19 23 23 O 1.35895 * 120.05215 * 179.68488 * 22 21 20 24 24 C 1.42897 * 117.00562 * 0.02562 * 23 22 21 25 25 C 1.38726 * 119.88693 * 359.69782 * 22 21 20 26 26 C 1.38142 * 119.94992 * 0.02562 * 25 22 21 27 27 H 1.08990 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46724 * 300.00164 * 1 2 3 29 29 H 1.09001 * 109.46773 * 59.99930 * 1 2 3 30 30 H 1.08996 * 109.47423 * 239.99566 * 2 1 3 31 31 H 1.09001 * 109.46773 * 120.00070 * 2 1 3 32 32 H 0.96995 * 120.00336 * 180.02562 * 8 7 5 33 33 H 1.09003 * 110.41146 * 319.74134 * 14 13 3 34 34 H 1.09001 * 110.41185 * 82.18153 * 14 13 3 35 35 H 1.08994 * 110.32269 * 264.95129 * 15 14 13 36 36 H 1.08997 * 110.40532 * 142.79274 * 15 14 13 37 37 H 1.08996 * 110.32510 * 241.10252 * 16 15 14 38 38 H 1.09005 * 110.32297 * 118.89583 * 16 15 14 39 39 H 1.08008 * 119.97358 * 359.97438 * 20 19 17 40 40 H 1.08001 * 120.02583 * 180.29549 * 21 20 19 41 41 H 1.09004 * 109.46824 * 60.00066 * 24 23 22 42 42 H 1.09005 * 109.47499 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.47302 * 300.00187 * 24 23 22 44 44 H 1.08003 * 120.02459 * 180.02562 * 25 22 21 45 45 H 1.08000 * 119.97762 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6204 1.9763 0.8526 5 6 3.5440 1.4435 0.0975 6 1 4.1352 0.9665 -0.6702 7 6 4.1650 2.0533 1.1669 8 7 5.4720 2.1996 1.1722 9 14 3.1501 2.6717 2.6080 10 1 2.6329 4.0299 2.3026 11 1 2.0102 1.7492 2.8427 12 1 4.0002 2.7277 3.8243 13 7 1.6296 2.1070 -1.2441 14 6 2.3628 1.5521 -2.4110 15 6 2.2573 2.6478 -3.4935 16 6 2.0210 3.9586 -2.7153 17 6 2.0035 3.5447 -1.2281 18 1 2.9909 3.6758 -0.7854 19 6 0.9777 4.3462 -0.4691 20 6 -0.3673 4.0610 -0.6155 21 6 -1.3093 4.7906 0.0837 22 6 -0.9055 5.8178 0.9242 23 8 -1.8307 6.5411 1.6081 24 6 -3.2020 6.1890 1.4146 25 6 0.4443 6.1055 1.0651 26 6 1.3828 5.3693 0.3682 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.9090 2.6283 1.9246 33 1 3.4064 1.3713 -2.1533 34 1 1.8902 0.6318 -2.7543 35 1 1.4169 2.4446 -4.1571 36 1 3.1837 2.7083 -4.0645 37 1 1.0645 4.3989 -2.9970 38 1 2.8324 4.6618 -2.9031 39 1 -0.6815 3.2646 -1.2739 40 1 -2.3595 4.5643 -0.0274 41 1 -3.3574 5.1535 1.7175 42 1 -3.8334 6.8427 2.0164 43 1 -3.4613 6.3024 0.3620 44 1 0.7612 6.9044 1.7191 45 1 2.4337 5.5932 0.4772 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:13 Heat of formation + Delta-G solvation = -13.181088 kcal Electronic energy + Delta-G solvation = -24474.522671 eV Core-core repulsion = 21263.939709 eV Total energy + Delta-G solvation = -3210.582962 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.95282 -38.69192 -36.75939 -34.14021 -32.09768 -30.87464 -30.60609 -29.69126 -27.75062 -26.61721 -26.18382 -23.04081 -22.48052 -21.74469 -21.00882 -19.53424 -18.65810 -17.90429 -16.91697 -16.06255 -15.62990 -15.60328 -15.06890 -14.30746 -14.21217 -13.70772 -13.42464 -13.31281 -13.10834 -12.78352 -12.66005 -12.56897 -12.36072 -11.95947 -11.89348 -11.71022 -11.44993 -11.01204 -10.88255 -10.84423 -10.68123 -10.53034 -10.35267 -10.21654 -10.00954 -9.97327 -9.71062 -9.53112 -9.12000 -8.66860 -8.49697 -7.68065 -7.20253 -6.16139 -4.17962 1.74208 1.82957 3.28859 3.36579 3.41336 3.42786 4.15046 4.37344 4.93464 5.00168 5.13203 5.16976 5.23437 5.29402 5.37358 5.42116 5.47563 5.66066 5.74568 5.83145 5.88348 5.99989 6.04629 6.09425 6.22001 6.25018 6.28105 6.39260 6.44578 6.49878 6.58715 6.65315 6.72673 6.74514 6.81583 6.88177 6.98292 6.99657 7.11501 7.18039 7.24999 7.29452 7.62313 7.64583 7.93379 8.25236 8.45008 8.88868 9.48962 10.95463 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.006980 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.637200 B = 4010.627111 C = 4585.109861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C 0.163 3.837 4 H 0.045 0.955 5 C -0.541 4.541 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.893 5.893 9 Si 0.861 3.139 10 H -0.259 1.259 11 H -0.269 1.269 12 H -0.293 1.293 13 N -0.499 5.499 14 C 0.032 3.968 15 C -0.121 4.121 16 C -0.111 4.111 17 C 0.101 3.899 18 H 0.081 0.919 19 C -0.087 4.087 20 C -0.052 4.052 21 C -0.216 4.216 22 C 0.110 3.890 23 O -0.324 6.324 24 C 0.030 3.970 25 C -0.157 4.157 26 C -0.073 4.073 27 H 0.031 0.969 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.264 0.736 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.053 0.947 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.005 5.442 -4.096 14.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C 0.056 3.944 4 H 0.063 0.937 5 C -0.579 4.579 6 H 0.096 0.904 7 C -0.121 4.121 8 N -0.530 5.530 9 Si 0.689 3.311 10 H -0.184 1.184 11 H -0.194 1.194 12 H -0.219 1.219 13 N -0.223 5.223 14 C -0.096 4.096 15 C -0.159 4.159 16 C -0.149 4.149 17 C -0.007 4.007 18 H 0.099 0.901 19 C -0.088 4.088 20 C -0.070 4.070 21 C -0.235 4.235 22 C 0.065 3.935 23 O -0.238 6.238 24 C -0.065 4.065 25 C -0.176 4.176 26 C -0.091 4.091 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.150 0.850 40 H 0.138 0.862 41 H 0.071 0.929 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.406 5.573 -3.894 15.031 hybrid contribution 0.326 0.195 1.066 1.132 sum -13.079 5.768 -2.829 14.572 Atomic orbital electron populations 1.21745 0.97827 0.99073 1.01381 1.21558 0.93456 0.98603 1.00563 1.19818 0.94320 0.91158 0.89088 0.93675 1.21482 0.90547 1.36687 1.09215 0.90419 1.25064 0.94629 0.94646 0.97805 1.69930 1.08760 1.42994 1.31306 0.87108 0.80459 0.80912 0.82662 1.18419 1.19373 1.21922 1.65771 1.51559 1.00584 1.04355 1.22984 0.99800 0.96218 0.90589 1.22262 1.00371 0.95505 0.97804 1.22274 1.00826 0.97187 0.94608 1.21375 0.96367 0.89498 0.93484 0.90117 1.19804 0.94487 0.96324 0.98179 1.20846 0.91933 0.97088 0.97167 1.21185 1.00047 0.99599 1.02624 1.18963 0.89144 0.92155 0.93189 1.86018 1.15726 1.56802 1.65240 1.22962 0.80481 1.01349 1.01724 1.20286 0.89753 1.03400 1.04157 1.20949 0.99146 0.94472 0.94570 0.94982 0.94224 0.92241 0.93194 0.93028 0.92642 0.91213 0.92068 0.92448 0.92394 0.92100 0.92210 0.85026 0.86151 0.92856 0.88778 0.92917 0.85934 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.79 37.16 0.36 -2.15 16 2 C -0.10 -2.12 5.38 -26.73 -0.14 -2.27 16 3 C 0.16 3.67 1.68 -68.87 -0.12 3.55 16 4 H 0.05 1.10 4.57 -51.93 -0.24 0.86 16 5 C -0.54 -14.13 6.67 -34.44 -0.23 -14.36 16 6 H 0.08 2.22 6.41 -52.49 -0.34 1.88 16 7 C 0.08 2.26 5.33 -17.82 -0.10 2.17 16 8 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 9 Si 0.86 21.23 26.91 -169.99 -4.57 16.66 16 10 H -0.26 -6.12 6.05 56.52 0.34 -5.78 16 11 H -0.27 -6.64 6.87 56.52 0.39 -6.25 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 N -0.50 -9.83 3.76 -216.96 -0.82 -10.65 16 14 C 0.03 0.60 5.53 -2.18 -0.01 0.59 16 15 C -0.12 -1.92 7.00 -25.35 -0.18 -2.09 16 16 C -0.11 -1.82 6.52 -25.35 -0.17 -1.98 16 17 C 0.10 1.97 2.32 -67.22 -0.16 1.81 16 18 H 0.08 1.86 6.69 -51.93 -0.35 1.51 16 19 C -0.09 -1.61 4.58 -104.60 -0.48 -2.09 16 20 C -0.05 -0.88 9.14 -39.61 -0.36 -1.24 16 21 C -0.22 -3.33 9.04 -39.43 -0.36 -3.68 16 22 C 0.11 1.79 6.69 -39.22 -0.26 1.53 16 23 O -0.32 -4.75 10.50 -19.41 -0.20 -4.95 16 24 C 0.03 0.30 9.81 101.05 0.99 1.30 16 25 C -0.16 -2.69 9.99 -39.44 -0.39 -3.09 16 26 C -0.07 -1.34 8.65 -39.60 -0.34 -1.68 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.02 7.72 -51.93 -0.40 0.62 16 30 H 0.05 1.00 7.08 -51.93 -0.37 0.63 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.07 1.51 5.45 -51.93 -0.28 1.23 16 34 H 0.06 1.07 7.66 -51.93 -0.40 0.68 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.93 7.71 -51.93 -0.40 0.53 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.13 2.14 7.76 -52.48 -0.41 1.73 16 40 H 0.12 1.53 6.30 -52.49 -0.33 1.20 16 41 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 44 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 45 H 0.13 2.28 8.04 -52.49 -0.42 1.86 16 LS Contribution 347.33 15.07 5.23 5.23 Total: -1.00 -28.77 347.33 -8.84 -37.61 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.32 Total: 5.14 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -1.94 Total: -23.69 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.04 Total: -36.00 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.20 Total: -4.95 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.57 Total: 16.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.77 -8.84 -37.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.429 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds