Wall clock time and date at job start Tue Mar 31 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47572 * 2 1 4 4 H 1.09002 * 109.47162 * 56.06373 * 3 2 1 5 5 C 1.50702 * 109.47170 * 176.06341 * 3 2 1 6 6 H 1.08000 * 119.99937 * 60.62867 * 5 3 2 7 7 C 1.37878 * 120.00006 * 240.62626 * 5 3 2 8 8 N 1.31514 * 120.00094 * 188.35795 * 7 5 3 9 9 Si 1.86803 * 120.00109 * 8.35328 * 7 5 3 10 10 H 1.48500 * 109.47259 * 275.52122 * 9 7 5 11 11 H 1.48508 * 109.46900 * 35.52049 * 9 7 5 12 12 H 1.48495 * 109.47098 * 155.51904 * 9 7 5 13 13 N 1.46898 * 109.47026 * 296.06734 * 3 2 1 14 14 C 1.48565 * 110.99713 * 290.41541 * 13 3 2 15 15 C 1.54384 * 104.59152 * 200.95980 * 14 13 3 16 16 C 1.54259 * 105.06108 * 23.85430 * 15 14 13 17 17 C 1.48561 * 110.99921 * 174.99737 * 13 3 2 18 18 H 1.09006 * 110.40883 * 40.26357 * 17 13 3 19 19 C 1.50696 * 110.41313 * 277.93297 * 17 13 3 20 20 C 1.38260 * 119.94482 * 319.73119 * 19 17 13 21 21 C 1.38148 * 120.05445 * 179.72401 * 20 19 17 22 22 C 1.38732 * 119.94314 * 0.56873 * 21 20 19 23 23 O 1.35895 * 120.05215 * 179.68488 * 22 21 20 24 24 C 1.42897 * 117.00562 * 0.02562 * 23 22 21 25 25 C 1.38726 * 119.88693 * 359.69782 * 22 21 20 26 26 C 1.38142 * 119.94992 * 0.02562 * 25 22 21 27 27 H 1.08990 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46724 * 300.00164 * 1 2 3 29 29 H 1.09001 * 109.46773 * 59.99930 * 1 2 3 30 30 H 1.08996 * 109.47423 * 239.99566 * 2 1 3 31 31 H 1.09001 * 109.46773 * 120.00070 * 2 1 3 32 32 H 0.96995 * 120.00336 * 180.02562 * 8 7 5 33 33 H 1.09003 * 110.41146 * 319.74134 * 14 13 3 34 34 H 1.09001 * 110.41185 * 82.18153 * 14 13 3 35 35 H 1.08994 * 110.32269 * 264.95129 * 15 14 13 36 36 H 1.08997 * 110.40532 * 142.79274 * 15 14 13 37 37 H 1.08996 * 110.32510 * 241.10252 * 16 15 14 38 38 H 1.09005 * 110.32297 * 118.89583 * 16 15 14 39 39 H 1.08008 * 119.97358 * 359.97438 * 20 19 17 40 40 H 1.08001 * 120.02583 * 180.29549 * 21 20 19 41 41 H 1.09004 * 109.46824 * 60.00066 * 24 23 22 42 42 H 1.09005 * 109.47499 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.47302 * 300.00187 * 24 23 22 44 44 H 1.08003 * 120.02459 * 180.02562 * 25 22 21 45 45 H 1.08000 * 119.97762 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6204 1.9763 0.8526 5 6 3.5440 1.4435 0.0975 6 1 4.1352 0.9665 -0.6702 7 6 4.1650 2.0533 1.1669 8 7 5.4720 2.1996 1.1722 9 14 3.1501 2.6717 2.6080 10 1 2.6329 4.0299 2.3026 11 1 2.0102 1.7492 2.8427 12 1 4.0002 2.7277 3.8243 13 7 1.6296 2.1070 -1.2441 14 6 2.3628 1.5521 -2.4110 15 6 2.2573 2.6478 -3.4935 16 6 2.0210 3.9586 -2.7153 17 6 2.0035 3.5447 -1.2281 18 1 2.9909 3.6758 -0.7854 19 6 0.9777 4.3462 -0.4691 20 6 -0.3673 4.0610 -0.6155 21 6 -1.3093 4.7906 0.0837 22 6 -0.9055 5.8178 0.9242 23 8 -1.8307 6.5411 1.6081 24 6 -3.2020 6.1890 1.4146 25 6 0.4443 6.1055 1.0651 26 6 1.3828 5.3693 0.3682 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.9090 2.6283 1.9246 33 1 3.4064 1.3713 -2.1533 34 1 1.8902 0.6318 -2.7543 35 1 1.4169 2.4446 -4.1571 36 1 3.1837 2.7083 -4.0645 37 1 1.0645 4.3989 -2.9970 38 1 2.8324 4.6618 -2.9031 39 1 -0.6815 3.2646 -1.2739 40 1 -2.3595 4.5643 -0.0274 41 1 -3.3574 5.1535 1.7175 42 1 -3.8334 6.8427 2.0164 43 1 -3.4613 6.3024 0.3620 44 1 0.7612 6.9044 1.7191 45 1 2.4337 5.5932 0.4772 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:12 Heat of formation + Delta-G solvation = -29.354173 kcal Electronic energy + Delta-G solvation = -24475.223989 eV Core-core repulsion = 21263.939709 eV Total energy + Delta-G solvation = -3211.284280 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.21322 -40.10594 -38.05468 -35.79698 -34.11786 -32.17150 -31.89638 -31.21660 -28.82251 -28.43775 -27.41042 -24.77470 -23.84422 -23.06390 -22.46288 -20.96590 -20.39656 -19.08782 -18.86415 -17.32926 -17.19301 -16.59325 -16.45484 -16.13025 -15.57045 -15.13764 -14.91265 -14.78868 -14.48858 -14.35383 -14.18156 -14.07772 -13.71353 -13.59648 -13.29016 -12.89136 -12.79494 -12.65774 -12.59423 -12.23363 -12.11213 -11.94327 -11.79847 -11.74568 -11.60856 -11.52627 -11.34470 -11.12391 -10.97992 -10.70640 -9.86154 -8.96364 -8.93574 -8.32454 -6.34605 0.44314 0.53072 1.28764 1.33535 1.37957 2.29414 2.41607 2.84003 3.01613 3.51426 3.91931 3.97885 4.00736 4.04785 4.28763 4.34526 4.37778 4.43293 4.44305 4.54975 4.56910 4.60473 4.69049 4.74843 4.76161 4.85035 4.88693 4.94945 5.08558 5.10730 5.19300 5.21851 5.25874 5.31602 5.37489 5.39328 5.48295 5.52161 5.53153 5.66502 5.68354 5.82351 5.88284 6.17374 6.43520 6.49327 6.52230 6.75740 7.34632 8.82743 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.006980 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.637200 B = 4010.627111 C = 4585.109861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 C 0.169 3.831 4 H 0.032 0.968 5 C -0.527 4.527 6 H 0.043 0.957 7 C 0.034 3.966 8 N -0.939 5.939 9 Si 0.911 3.089 10 H -0.248 1.248 11 H -0.264 1.264 12 H -0.297 1.297 13 N -0.482 5.482 14 C 0.030 3.970 15 C -0.112 4.112 16 C -0.106 4.106 17 C 0.101 3.899 18 H 0.033 0.967 19 C -0.104 4.104 20 C -0.052 4.052 21 C -0.207 4.207 22 C 0.111 3.889 23 O -0.337 6.337 24 C 0.018 3.982 25 C -0.170 4.170 26 C -0.092 4.092 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.262 0.738 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.142 0.858 40 H 0.154 0.846 41 H 0.060 0.940 42 H 0.119 0.881 43 H 0.067 0.933 44 H 0.131 0.869 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.964 5.746 -4.833 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.143 4.143 3 C 0.061 3.939 4 H 0.050 0.950 5 C -0.566 4.566 6 H 0.061 0.939 7 C -0.165 4.165 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.172 1.172 11 H -0.189 1.189 12 H -0.224 1.224 13 N -0.205 5.205 14 C -0.098 4.098 15 C -0.150 4.150 16 C -0.144 4.144 17 C -0.008 4.008 18 H 0.051 0.949 19 C -0.105 4.105 20 C -0.070 4.070 21 C -0.226 4.226 22 C 0.066 3.934 23 O -0.251 6.251 24 C -0.076 4.076 25 C -0.188 4.188 26 C -0.111 4.111 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.160 0.840 40 H 0.171 0.829 41 H 0.079 0.921 42 H 0.138 0.862 43 H 0.086 0.914 44 H 0.149 0.851 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.395 5.879 -4.644 18.939 hybrid contribution 1.517 0.109 1.247 1.967 sum -15.878 5.987 -3.397 17.306 Atomic orbital electron populations 1.21624 0.94786 1.00834 1.01613 1.21499 0.96122 0.96691 0.99977 1.19704 0.91468 0.92690 0.90056 0.95017 1.21709 0.92658 1.34660 1.07545 0.93855 1.25683 0.95254 0.95380 1.00179 1.70052 1.10406 1.45277 1.32212 0.86295 0.79122 0.81099 0.79768 1.17180 1.18874 1.22402 1.65746 1.50732 1.00757 1.03298 1.23004 0.97413 0.98136 0.91261 1.22240 1.02038 0.93658 0.97076 1.22266 1.02007 0.97664 0.92455 1.21306 0.94506 0.89487 0.95479 0.94879 1.19743 0.95131 0.96704 0.98945 1.20937 0.91179 0.97444 0.97482 1.21478 1.01429 0.98432 1.01220 1.19048 0.89180 0.92174 0.92962 1.86014 1.17494 1.56720 1.64907 1.23337 0.78250 1.02570 1.03422 1.20420 0.90488 1.03622 1.04284 1.20919 0.98874 0.95519 0.95753 0.92501 0.94555 0.91343 0.93020 0.94523 0.92846 0.95158 0.90490 0.89511 0.91704 0.90084 0.92098 0.84031 0.82856 0.92097 0.86236 0.91419 0.85149 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 9.79 71.98 0.70 -3.53 16 2 C -0.10 -4.20 5.38 30.59 0.16 -4.04 16 3 C 0.17 7.63 1.68 44.17 0.07 7.70 16 4 H 0.03 1.54 4.57 -2.39 -0.01 1.53 16 5 C -0.53 -28.73 6.67 25.60 0.17 -28.56 16 6 H 0.04 2.63 6.41 -2.91 -0.02 2.61 16 7 C 0.03 1.96 5.33 84.65 0.45 2.41 16 8 N -0.94 -57.83 13.96 21.45 0.30 -57.53 16 9 Si 0.91 45.13 26.91 68.60 1.85 46.98 16 10 H -0.25 -11.69 6.05 99.48 0.60 -11.09 16 11 H -0.26 -12.76 6.87 99.48 0.68 -12.07 16 12 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 13 N -0.48 -18.69 3.76 -840.33 -3.16 -21.85 16 14 C 0.03 1.11 5.53 86.45 0.48 1.58 16 15 C -0.11 -3.32 7.00 31.49 0.22 -3.10 16 16 C -0.11 -3.34 6.52 31.49 0.21 -3.13 16 17 C 0.10 3.94 2.32 44.32 0.10 4.04 16 18 H 0.03 1.61 6.69 -2.38 -0.02 1.59 16 19 C -0.10 -3.78 4.58 -19.85 -0.09 -3.87 16 20 C -0.05 -1.62 9.14 22.25 0.20 -1.41 16 21 C -0.21 -5.65 9.04 22.37 0.20 -5.45 16 22 C 0.11 3.34 6.69 22.50 0.15 3.49 16 23 O -0.34 -8.85 10.50 -92.37 -0.97 -9.82 16 24 C 0.02 0.29 9.81 113.37 1.11 1.41 16 25 C -0.17 -5.65 9.99 22.36 0.22 -5.42 16 26 C -0.09 -3.39 8.65 22.25 0.19 -3.20 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 2.09 7.72 -2.39 -0.02 2.07 16 30 H 0.05 2.03 7.08 -2.39 -0.02 2.01 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.03 1.36 5.45 -2.39 -0.01 1.35 16 34 H 0.08 2.58 7.66 -2.39 -0.02 2.56 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 2.25 7.71 -2.39 -0.02 2.23 16 38 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.14 4.07 7.76 -2.91 -0.02 4.05 16 40 H 0.15 3.11 6.30 -2.91 -0.02 3.09 16 41 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 42 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 44 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 45 H 0.11 4.24 8.04 -2.91 -0.02 4.22 16 Total: -1.00 -65.02 347.33 3.41 -61.61 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.83 Total: 21.71 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 4.57 Total: -41.09 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -2.86 Total: -79.38 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.97 Total: -9.82 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.85 Total: 46.98 kcal Total: -65.02 3.41 -61.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.258 kcal (2) G-P(sol) polarization free energy of solvation -65.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds