Wall clock time and date at job start Tue Mar 31 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47134 * 2 1 4 4 H 1.09000 * 109.47139 * 178.55514 * 3 2 1 5 5 C 1.50701 * 109.46948 * 58.55434 * 3 2 1 6 6 H 1.08001 * 120.00038 * 239.99575 * 5 3 2 7 7 C 1.37879 * 119.99790 * 59.99952 * 5 3 2 8 8 N 1.31505 * 120.00283 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99423 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47283 * 60.00043 * 9 7 5 11 11 H 1.48502 * 109.46588 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47059 * 299.99753 * 9 7 5 13 13 N 1.46903 * 109.47306 * 298.55132 * 3 2 1 14 14 C 1.47901 * 110.99643 * 80.34302 * 13 3 2 15 15 C 1.53998 * 107.05897 * 214.15537 * 14 13 3 16 16 C 1.54595 * 105.13740 * 1.22846 * 15 14 13 17 17 C 1.48532 * 111.00095 * 322.94811 * 13 3 2 18 18 H 1.09002 * 110.66540 * 41.28302 * 17 13 3 19 19 C 1.50699 * 110.66816 * 278.15534 * 17 13 3 20 20 C 1.38267 * 119.94091 * 319.72766 * 19 17 13 21 21 C 1.38147 * 120.05352 * 179.72920 * 20 19 17 22 22 C 1.38732 * 119.94387 * 0.51848 * 21 20 19 23 23 O 1.35893 * 120.05727 * 179.73078 * 22 21 20 24 24 C 1.42902 * 117.00130 * 0.02562 * 23 22 21 25 25 C 1.38735 * 119.88582 * 359.75343 * 22 21 20 26 26 C 1.38141 * 119.94757 * 359.97438 * 25 22 21 27 27 H 1.08991 * 109.47226 * 188.41921 * 1 2 3 28 28 H 1.09002 * 109.46932 * 308.41868 * 1 2 3 29 29 H 1.08999 * 109.47130 * 68.41360 * 1 2 3 30 30 H 1.09000 * 109.46663 * 240.00132 * 2 1 3 31 31 H 1.08993 * 109.47141 * 120.00516 * 2 1 3 32 32 H 0.97005 * 120.00122 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.92005 * 333.50814 * 14 13 3 34 34 H 1.09000 * 109.91778 * 94.80337 * 14 13 3 35 35 H 1.09001 * 110.30849 * 120.13937 * 15 14 13 36 36 H 1.08992 * 110.30938 * 242.31118 * 15 14 13 37 37 H 1.08999 * 110.72773 * 140.31516 * 16 15 14 38 38 H 1.09001 * 110.72456 * 263.59846 * 16 15 14 39 39 H 1.08001 * 119.97186 * 359.97438 * 20 19 17 40 40 H 1.08000 * 120.02372 * 180.24943 * 21 20 19 41 41 H 1.08999 * 109.47158 * 59.99858 * 24 23 22 42 42 H 1.08995 * 109.47641 * 180.02562 * 24 23 22 43 43 H 1.09004 * 109.47125 * 300.00275 * 24 23 22 44 44 H 1.08003 * 120.02791 * 180.02562 * 25 22 21 45 45 H 1.08002 * 119.97168 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 0.0259 5 6 1.5086 2.1632 1.2122 6 1 0.8904 3.0404 1.0910 7 6 1.8118 1.7026 2.4759 8 7 2.5642 0.6343 2.6235 9 14 1.1536 2.5964 3.9785 10 1 -0.3309 2.5969 3.9433 11 1 1.6200 1.9069 5.2082 12 1 1.6492 3.9963 3.9782 13 7 1.5792 2.1249 -1.2166 14 6 0.1780 2.5760 -1.0727 15 6 -0.4800 2.4557 -2.4598 16 6 0.6214 1.8824 -3.3808 17 6 1.5901 1.2026 -2.3808 18 1 1.2195 0.2181 -2.0951 19 6 2.9749 1.1018 -2.9666 20 6 3.7623 2.2332 -3.0750 21 6 5.0343 2.1425 -3.6065 22 6 5.5172 0.9169 -4.0415 23 8 6.7660 0.8260 -4.5698 24 6 7.5273 2.0329 -4.6466 25 6 4.7229 -0.2158 -3.9368 26 6 3.4539 -0.1208 -3.3994 27 1 -0.3633 -1.0165 0.1505 28 1 -0.3633 0.6386 0.8052 29 1 -0.3633 0.3781 -0.9556 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.7778 0.3105 3.5126 33 1 -0.3449 1.9413 -0.3573 34 1 0.1543 3.6135 -0.7392 35 1 -1.3301 1.7747 -2.4174 36 1 -0.7972 3.4363 -2.8144 37 1 0.2038 1.1502 -4.0718 38 1 1.1257 2.6823 -3.9230 39 1 3.3842 3.1878 -2.7403 40 1 5.6504 3.0258 -3.6872 41 1 7.6619 2.4419 -3.6452 42 1 8.5016 1.8206 -5.0867 43 1 6.9989 2.7570 -5.2667 44 1 5.0968 -1.1711 -4.2744 45 1 2.8351 -1.0023 -3.3181 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:15 Heat of formation + Delta-G solvation = 9.500132 kcal Electronic energy + Delta-G solvation = -24207.195634 eV Core-core repulsion = 20997.596203 eV Total energy + Delta-G solvation = -3209.599431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.05507 -39.08148 -36.87829 -34.06404 -31.46544 -30.96621 -30.65980 -29.37719 -27.84047 -26.41514 -26.05375 -23.64414 -22.57415 -21.71157 -20.43205 -19.99947 -18.67459 -17.89378 -16.32068 -15.81780 -15.59621 -15.48151 -15.31082 -14.43831 -14.18485 -13.69690 -13.58957 -13.33699 -13.14257 -12.91026 -12.67782 -12.49919 -11.96802 -11.83005 -11.68070 -11.37275 -11.13540 -10.93882 -10.88559 -10.85390 -10.69261 -10.50018 -10.33560 -10.22726 -9.95241 -9.91932 -9.72700 -9.41107 -8.76004 -8.60697 -8.37463 -7.69228 -7.06169 -5.99468 -4.03511 1.72174 1.82412 3.30858 3.36171 3.38463 3.43484 4.12642 4.41469 4.96901 5.03106 5.16730 5.18065 5.26972 5.31247 5.33322 5.38408 5.45524 5.60657 5.66772 5.79817 5.82985 5.96552 6.07282 6.12099 6.24943 6.32578 6.36236 6.37488 6.46362 6.55990 6.60096 6.64975 6.76737 6.83470 6.88602 6.95020 7.09677 7.14470 7.30521 7.39099 7.61293 7.65274 7.73667 7.81206 8.09063 8.43269 8.58405 9.01888 9.60588 11.06559 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.005147 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.748765 B = 5438.335620 C = 6204.253280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.148 4.148 3 C 0.209 3.791 4 H 0.040 0.960 5 C -0.508 4.508 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.503 5.503 14 C 0.030 3.970 15 C -0.135 4.135 16 C -0.113 4.113 17 C 0.087 3.913 18 H 0.076 0.924 19 C -0.084 4.084 20 C -0.047 4.047 21 C -0.212 4.212 22 C 0.111 3.889 23 O -0.324 6.324 24 C 0.030 3.970 25 C -0.156 4.156 26 C -0.080 4.080 27 H 0.021 0.979 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.024 0.976 31 H 0.093 0.907 32 H 0.260 0.740 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.133 0.867 40 H 0.121 0.879 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 0.983 -13.382 13.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.188 4.188 3 C 0.102 3.898 4 H 0.058 0.942 5 C -0.546 4.546 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.227 5.227 14 C -0.098 4.098 15 C -0.173 4.173 16 C -0.151 4.151 17 C -0.022 4.022 18 H 0.093 0.907 19 C -0.085 4.085 20 C -0.065 4.065 21 C -0.230 4.230 22 C 0.067 3.933 23 O -0.238 6.238 24 C -0.066 4.066 25 C -0.174 4.174 26 C -0.099 4.099 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.151 0.849 40 H 0.139 0.861 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.261 1.159 -13.360 13.599 hybrid contribution -0.694 0.002 1.240 1.421 sum 1.567 1.161 -12.120 12.276 Atomic orbital electron populations 1.22008 0.98352 0.98906 1.00741 1.22119 0.94316 1.01512 1.00810 1.19389 0.96026 0.88674 0.85693 0.94197 1.21187 1.31525 1.11871 0.90018 0.91950 1.24894 0.95171 0.94996 0.98782 1.69870 1.37189 1.23028 1.22678 0.86690 0.79196 0.79932 0.82367 1.20380 1.21434 1.20326 1.64995 1.19121 1.34053 1.04515 1.23101 0.90242 1.01310 0.95098 1.22490 0.97716 1.00172 0.96935 1.22496 0.96152 0.99423 0.97015 1.21860 0.90739 0.97615 0.91951 0.90665 1.19670 0.96553 0.92754 0.99547 1.20868 0.92029 0.99458 0.94162 1.21216 0.98501 0.96401 1.06930 1.18974 0.84376 0.94363 0.95605 1.86011 1.25194 1.34351 1.78223 1.22975 0.95340 0.86592 1.01664 1.20248 0.94372 0.96795 1.06023 1.20815 0.94517 0.97379 0.97157 0.95964 0.91281 0.94170 0.95751 0.88863 0.92992 0.90300 0.92029 0.92465 0.92212 0.92270 0.91504 0.84941 0.86084 0.92692 0.88755 0.92936 0.85887 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 7.87 37.16 0.29 -2.67 16 2 C -0.15 -3.42 4.90 -26.73 -0.13 -3.55 16 3 C 0.21 5.06 2.65 -68.86 -0.18 4.88 16 4 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 5 C -0.51 -13.24 6.32 -34.44 -0.22 -13.46 16 6 H 0.06 1.62 6.20 -52.49 -0.33 1.30 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.86 11.33 55.43 0.63 -24.24 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.50 -10.31 4.48 -217.45 -0.97 -11.29 16 14 C 0.03 0.57 4.30 -2.75 -0.01 0.56 16 15 C -0.13 -2.07 6.42 -25.37 -0.16 -2.23 16 16 C -0.11 -1.71 6.47 -24.87 -0.16 -1.87 16 17 C 0.09 1.54 1.55 -66.94 -0.10 1.44 16 18 H 0.08 1.41 4.11 -51.93 -0.21 1.19 16 19 C -0.08 -1.46 4.91 -104.60 -0.51 -1.98 16 20 C -0.05 -0.79 9.11 -39.60 -0.36 -1.16 16 21 C -0.21 -3.26 9.04 -39.43 -0.36 -3.62 16 22 C 0.11 1.73 6.69 -39.22 -0.26 1.47 16 23 O -0.32 -4.59 10.50 -19.40 -0.20 -4.80 16 24 C 0.03 0.30 9.81 101.05 0.99 1.29 16 25 C -0.16 -2.41 9.99 -39.43 -0.39 -2.80 16 26 C -0.08 -1.28 9.68 -39.61 -0.38 -1.67 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 1.56 6.09 -51.93 -0.32 1.24 16 29 H 0.04 0.75 4.28 -51.93 -0.22 0.53 16 30 H 0.02 0.52 5.96 -51.93 -0.31 0.21 16 31 H 0.09 2.45 6.11 -51.93 -0.32 2.13 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.08 1.61 3.52 -51.93 -0.18 1.42 16 34 H 0.06 1.20 7.65 -51.93 -0.40 0.81 16 35 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.99 7.85 -51.93 -0.41 0.59 16 39 H 0.13 2.29 7.77 -52.49 -0.41 1.88 16 40 H 0.12 1.58 6.30 -52.49 -0.33 1.25 16 41 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 44 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 45 H 0.12 1.76 8.04 -52.49 -0.42 1.34 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -28.18 336.31 -9.28 -37.47 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.73 Total: 5.60 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -2.05 Total: -23.76 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.35 Total: -35.52 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.20 Total: -4.80 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.18 -9.28 -37.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.965 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds