Wall clock time and date at job start Tue Mar 31 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47134 * 2 1 4 4 H 1.09000 * 109.47139 * 178.55514 * 3 2 1 5 5 C 1.50701 * 109.46948 * 58.55434 * 3 2 1 6 6 H 1.08001 * 120.00038 * 239.99575 * 5 3 2 7 7 C 1.37879 * 119.99790 * 59.99952 * 5 3 2 8 8 N 1.31505 * 120.00283 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99423 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47283 * 60.00043 * 9 7 5 11 11 H 1.48502 * 109.46588 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47059 * 299.99753 * 9 7 5 13 13 N 1.46903 * 109.47306 * 298.55132 * 3 2 1 14 14 C 1.47901 * 110.99643 * 80.34302 * 13 3 2 15 15 C 1.53998 * 107.05897 * 214.15537 * 14 13 3 16 16 C 1.54595 * 105.13740 * 1.22846 * 15 14 13 17 17 C 1.48532 * 111.00095 * 322.94811 * 13 3 2 18 18 H 1.09002 * 110.66540 * 41.28302 * 17 13 3 19 19 C 1.50699 * 110.66816 * 278.15534 * 17 13 3 20 20 C 1.38267 * 119.94091 * 319.72766 * 19 17 13 21 21 C 1.38147 * 120.05352 * 179.72920 * 20 19 17 22 22 C 1.38732 * 119.94387 * 0.51848 * 21 20 19 23 23 O 1.35893 * 120.05727 * 179.73078 * 22 21 20 24 24 C 1.42902 * 117.00130 * 0.02562 * 23 22 21 25 25 C 1.38735 * 119.88582 * 359.75343 * 22 21 20 26 26 C 1.38141 * 119.94757 * 359.97438 * 25 22 21 27 27 H 1.08991 * 109.47226 * 188.41921 * 1 2 3 28 28 H 1.09002 * 109.46932 * 308.41868 * 1 2 3 29 29 H 1.08999 * 109.47130 * 68.41360 * 1 2 3 30 30 H 1.09000 * 109.46663 * 240.00132 * 2 1 3 31 31 H 1.08993 * 109.47141 * 120.00516 * 2 1 3 32 32 H 0.97005 * 120.00122 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.92005 * 333.50814 * 14 13 3 34 34 H 1.09000 * 109.91778 * 94.80337 * 14 13 3 35 35 H 1.09001 * 110.30849 * 120.13937 * 15 14 13 36 36 H 1.08992 * 110.30938 * 242.31118 * 15 14 13 37 37 H 1.08999 * 110.72773 * 140.31516 * 16 15 14 38 38 H 1.09001 * 110.72456 * 263.59846 * 16 15 14 39 39 H 1.08001 * 119.97186 * 359.97438 * 20 19 17 40 40 H 1.08000 * 120.02372 * 180.24943 * 21 20 19 41 41 H 1.08999 * 109.47158 * 59.99858 * 24 23 22 42 42 H 1.08995 * 109.47641 * 180.02562 * 24 23 22 43 43 H 1.09004 * 109.47125 * 300.00275 * 24 23 22 44 44 H 1.08003 * 120.02791 * 180.02562 * 25 22 21 45 45 H 1.08002 * 119.97168 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 0.0259 5 6 1.5086 2.1632 1.2122 6 1 0.8904 3.0404 1.0910 7 6 1.8118 1.7026 2.4759 8 7 2.5642 0.6343 2.6235 9 14 1.1536 2.5964 3.9785 10 1 -0.3309 2.5969 3.9433 11 1 1.6200 1.9069 5.2082 12 1 1.6492 3.9963 3.9782 13 7 1.5792 2.1249 -1.2166 14 6 0.1780 2.5760 -1.0727 15 6 -0.4800 2.4557 -2.4598 16 6 0.6214 1.8824 -3.3808 17 6 1.5901 1.2026 -2.3808 18 1 1.2195 0.2181 -2.0951 19 6 2.9749 1.1018 -2.9666 20 6 3.7623 2.2332 -3.0750 21 6 5.0343 2.1425 -3.6065 22 6 5.5172 0.9169 -4.0415 23 8 6.7660 0.8260 -4.5698 24 6 7.5273 2.0329 -4.6466 25 6 4.7229 -0.2158 -3.9368 26 6 3.4539 -0.1208 -3.3994 27 1 -0.3633 -1.0165 0.1505 28 1 -0.3633 0.6386 0.8052 29 1 -0.3633 0.3781 -0.9556 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.7778 0.3105 3.5126 33 1 -0.3449 1.9413 -0.3573 34 1 0.1543 3.6135 -0.7392 35 1 -1.3301 1.7747 -2.4174 36 1 -0.7972 3.4363 -2.8144 37 1 0.2038 1.1502 -4.0718 38 1 1.1257 2.6823 -3.9230 39 1 3.3842 3.1878 -2.7403 40 1 5.6504 3.0258 -3.6872 41 1 7.6619 2.4419 -3.6452 42 1 8.5016 1.8206 -5.0867 43 1 6.9989 2.7570 -5.2667 44 1 5.0968 -1.1711 -4.2744 45 1 2.8351 -1.0023 -3.3181 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:14 Heat of formation + Delta-G solvation = -6.010303 kcal Electronic energy + Delta-G solvation = -24207.868217 eV Core-core repulsion = 20997.596203 eV Total energy + Delta-G solvation = -3210.272014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35519 -40.42896 -38.11206 -35.78874 -33.35868 -32.22530 -31.90207 -31.00956 -28.94671 -27.92234 -27.57159 -25.41562 -23.85505 -22.95163 -22.02813 -21.44164 -20.26718 -19.01414 -17.85284 -17.58360 -17.01851 -16.71273 -16.57951 -15.97793 -15.70923 -15.15585 -15.08678 -14.64677 -14.42544 -14.34437 -14.09686 -13.86505 -13.57907 -13.16651 -12.89782 -12.78139 -12.72014 -12.69857 -12.53784 -12.45627 -12.07904 -11.95312 -11.72183 -11.63030 -11.59202 -11.41201 -11.40694 -11.05132 -10.71318 -10.42609 -9.84144 -8.91447 -8.70863 -8.05255 -6.15203 0.49180 0.57209 1.41974 1.43063 1.49815 2.43897 2.44082 2.87552 3.23437 3.53875 3.95004 4.00679 4.02245 4.06197 4.30097 4.35894 4.40785 4.40929 4.49388 4.58099 4.59201 4.64559 4.68071 4.75273 4.77771 4.85728 4.87226 5.02455 5.11537 5.14777 5.19460 5.24813 5.32352 5.40816 5.46860 5.50100 5.54852 5.62693 5.71513 5.79354 5.81235 5.90683 5.99925 6.18432 6.51901 6.56437 6.78942 7.00857 7.52941 8.99513 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.005147 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.748765 B = 5438.335620 C = 6204.253280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.140 4.140 3 C 0.220 3.780 4 H -0.010 1.010 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.512 5.512 14 C 0.027 3.973 15 C -0.125 4.125 16 C -0.105 4.105 17 C 0.087 3.913 18 H 0.068 0.932 19 C -0.104 4.104 20 C -0.062 4.062 21 C -0.214 4.214 22 C 0.107 3.893 23 O -0.335 6.335 24 C 0.020 3.980 25 C -0.162 4.162 26 C -0.086 4.086 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.258 0.742 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.122 0.878 40 H 0.141 0.859 41 H 0.054 0.946 42 H 0.122 0.878 43 H 0.064 0.936 44 H 0.141 0.859 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 1.264 -14.985 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.179 4.179 3 C 0.113 3.887 4 H 0.008 0.992 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.202 1.202 13 N -0.235 5.235 14 C -0.101 4.101 15 C -0.163 4.163 16 C -0.143 4.143 17 C -0.021 4.021 18 H 0.085 0.915 19 C -0.105 4.105 20 C -0.080 4.080 21 C -0.233 4.233 22 C 0.062 3.938 23 O -0.249 6.249 24 C -0.075 4.075 25 C -0.181 4.181 26 C -0.105 4.105 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.073 0.927 42 H 0.140 0.860 43 H 0.083 0.917 44 H 0.158 0.842 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.532 1.455 -14.981 15.129 hybrid contribution -0.349 -0.056 1.672 1.708 sum 1.183 1.399 -13.309 13.435 Atomic orbital electron populations 1.21860 0.96276 0.99448 1.01137 1.21947 0.96031 1.00352 0.99602 1.19008 0.93040 0.89676 0.87024 0.99237 1.21444 1.30974 1.11686 0.90952 0.92176 1.25590 0.95527 0.95668 1.01385 1.70024 1.38457 1.24356 1.22903 0.85777 0.78995 0.78678 0.79177 1.19410 1.21480 1.20188 1.64839 1.20331 1.34539 1.03790 1.23089 0.89454 1.00158 0.97412 1.22438 0.97817 1.01824 0.94235 1.22481 0.95291 0.99861 0.96626 1.21886 0.91961 0.96772 0.91467 0.91479 1.19759 0.96685 0.93485 1.00536 1.20870 0.92947 0.99077 0.95111 1.21405 0.98112 0.97392 1.06340 1.19134 0.85079 0.94335 0.95239 1.86003 1.24589 1.36504 1.77807 1.23294 0.96214 0.85707 1.02251 1.20524 0.94215 0.97713 1.05634 1.20998 0.95064 0.97382 0.97032 0.94522 0.93401 0.91921 0.94565 0.92398 0.93302 0.91704 0.93187 0.90789 0.90311 0.89810 0.91226 0.85969 0.84096 0.92692 0.86002 0.91703 0.84157 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 7.87 71.98 0.57 -4.76 16 2 C -0.14 -6.56 4.90 30.60 0.15 -6.41 16 3 C 0.22 11.01 2.65 44.17 0.12 11.13 16 4 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 5 C -0.51 -27.37 6.32 25.60 0.16 -27.21 16 6 H 0.06 3.18 6.20 -2.91 -0.02 3.16 16 7 C 0.02 0.93 5.30 84.66 0.45 1.38 16 8 N -0.92 -52.96 11.33 21.45 0.24 -52.71 16 9 Si 0.95 43.56 29.54 68.60 2.03 45.58 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.51 -21.10 4.48 -841.88 -3.77 -24.88 16 14 C 0.03 0.99 4.30 86.45 0.37 1.36 16 15 C -0.13 -3.49 6.42 31.47 0.20 -3.29 16 16 C -0.10 -2.91 6.47 31.80 0.21 -2.70 16 17 C 0.09 3.02 1.55 44.52 0.07 3.09 16 18 H 0.07 2.43 4.11 -2.39 -0.01 2.42 16 19 C -0.10 -3.57 4.91 -19.85 -0.10 -3.66 16 20 C -0.06 -2.10 9.11 22.25 0.20 -1.89 16 21 C -0.21 -6.46 9.04 22.37 0.20 -6.26 16 22 C 0.11 3.23 6.69 22.51 0.15 3.38 16 23 O -0.33 -8.97 10.50 -92.34 -0.97 -9.94 16 24 C 0.02 0.35 9.81 113.37 1.11 1.47 16 25 C -0.16 -4.85 9.99 22.37 0.22 -4.62 16 26 C -0.09 -2.70 9.68 22.25 0.22 -2.48 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 2.15 6.09 -2.39 -0.01 2.14 16 29 H 0.06 2.25 4.28 -2.39 -0.01 2.24 16 30 H 0.04 1.58 5.96 -2.39 -0.01 1.56 16 31 H 0.06 3.14 6.11 -2.39 -0.01 3.13 16 32 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 33 H 0.06 2.60 3.52 -2.39 -0.01 2.59 16 34 H 0.05 1.94 7.65 -2.39 -0.02 1.92 16 35 H 0.07 1.84 7.87 -2.39 -0.02 1.83 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 1.91 7.85 -2.39 -0.02 1.89 16 39 H 0.12 4.31 7.77 -2.91 -0.02 4.29 16 40 H 0.14 3.53 6.30 -2.91 -0.02 3.51 16 41 H 0.05 1.00 7.66 -2.39 -0.02 0.98 16 42 H 0.12 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.06 1.02 7.66 -2.38 -0.02 1.00 16 44 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 45 H 0.14 3.75 8.04 -2.91 -0.02 3.73 16 Total: -1.00 -62.24 336.31 2.81 -59.43 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.98 Total: 24.01 kcal Atomic # 6 Polarization: -45.79 SS G_CDS: 4.30 Total: -41.49 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -3.53 Total: -77.59 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.97 Total: -9.94 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -62.24 2.81 -59.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.417 kcal (2) G-P(sol) polarization free energy of solvation -62.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds