Wall clock time and date at job start Tue Mar 31 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.46790 * 2 1 4 4 H 1.09000 * 109.46933 * 180.54394 * 3 2 1 5 5 C 1.50706 * 109.47036 * 300.53885 * 3 2 1 6 6 H 1.08001 * 119.99530 * 120.00298 * 5 3 2 7 7 C 1.37874 * 120.00196 * 300.00365 * 5 3 2 8 8 N 1.31512 * 119.99853 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00034 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46825 * 90.00391 * 9 7 5 11 11 H 1.48500 * 109.46985 * 210.00136 * 9 7 5 12 12 H 1.48497 * 109.47268 * 330.00453 * 9 7 5 13 13 N 1.46898 * 109.47310 * 60.54238 * 3 2 1 14 14 C 1.48062 * 111.16513 * 59.78583 * 13 3 2 15 15 C 1.53993 * 107.14379 * 145.63006 * 14 13 3 16 16 C 1.54600 * 105.14034 * 358.91875 * 15 14 13 17 17 H 1.08997 * 110.72219 * 96.39888 * 16 15 14 18 18 C 1.50701 * 110.72251 * 219.68389 * 16 15 14 19 19 C 1.38264 * 119.94355 * 53.22466 * 18 16 15 20 20 C 1.38147 * 120.05530 * 179.72233 * 19 18 16 21 21 C 1.38733 * 119.93971 * 0.57306 * 20 19 18 22 22 O 1.35895 * 120.05282 * 179.67655 * 21 20 19 23 23 C 1.42896 * 117.00284 * 0.02769 * 22 21 20 24 24 C 1.38733 * 119.89061 * 359.70900 * 21 20 19 25 25 C 1.38145 * 119.94453 * 359.97438 * 24 21 20 26 26 C 1.48537 * 110.99856 * 177.18201 * 13 3 2 27 27 H 1.08995 * 109.46552 * 65.41892 * 1 2 3 28 28 H 1.09004 * 109.46742 * 185.41815 * 1 2 3 29 29 H 1.09001 * 109.46972 * 305.41640 * 1 2 3 30 30 H 1.08995 * 109.47399 * 240.00033 * 2 1 3 31 31 H 1.08999 * 109.47062 * 119.99642 * 2 1 3 32 32 H 0.96999 * 120.00309 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.75389 * 26.31516 * 14 13 3 34 34 H 1.09003 * 110.15534 * 265.16934 * 14 13 3 35 35 H 1.09000 * 110.30687 * 240.00034 * 15 14 13 36 36 H 1.09002 * 110.38960 * 117.87620 * 15 14 13 37 37 H 1.08001 * 119.97197 * 359.97438 * 19 18 16 38 38 H 1.07995 * 120.02715 * 180.25234 * 20 19 18 39 39 H 1.09000 * 109.46780 * 299.99332 * 23 22 21 40 40 H 1.08999 * 109.47269 * 59.99431 * 23 22 21 41 41 H 1.09003 * 109.47251 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.02690 * 179.97438 * 24 21 20 43 43 H 1.07999 * 119.97415 * 180.02562 * 25 24 21 44 44 H 1.08996 * 110.67346 * 81.84106 * 26 13 3 45 45 H 1.09001 * 110.66731 * 318.87585 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 -0.0098 5 6 1.5267 2.1568 -1.2238 6 1 0.9067 3.0345 -1.1164 7 6 1.8486 1.6896 -2.4804 8 7 2.6032 0.6205 -2.6111 9 14 1.2118 2.5745 -3.9972 10 1 2.1859 3.6178 -4.4071 11 1 1.0372 1.5986 -5.1028 12 1 -0.0938 3.2107 -3.6876 13 7 1.5611 2.1312 1.2059 14 6 2.0406 1.4559 2.4332 15 6 2.2903 2.5516 3.4861 16 6 1.9514 3.8811 2.7736 17 1 0.9314 4.1912 3.0006 18 6 2.9351 4.9568 3.1559 19 6 4.2922 4.7321 3.0168 20 6 5.1958 5.7188 3.3611 21 6 4.7408 6.9315 3.8581 22 8 5.6279 7.9012 4.2038 23 6 7.0146 7.6043 4.0286 24 6 3.3787 7.1523 4.0023 25 6 2.4790 6.1649 3.6503 26 6 2.0928 3.5165 1.2743 27 1 -0.3632 0.4275 -0.9345 28 1 -0.3633 -1.0231 0.0970 29 1 -0.3633 0.5956 0.8375 30 1 1.8935 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.8300 0.2920 -3.4952 33 1 2.9687 0.9247 2.2227 34 1 1.2870 0.7570 2.7962 35 1 3.3346 2.5452 3.7983 36 1 1.6378 2.4067 4.3471 37 1 4.6461 3.7860 2.6347 38 1 6.2556 5.5442 3.2484 39 1 7.2794 6.7364 4.6327 40 1 7.2103 7.3892 2.9782 41 1 7.6120 8.4605 4.3421 42 1 3.0221 8.0954 4.3893 43 1 1.4186 6.3364 3.7619 44 1 1.4965 4.1885 0.6571 45 1 3.1389 3.5425 0.9692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:52 Heat of formation + Delta-G solvation = -29.628892 kcal Electronic energy + Delta-G solvation = -23279.390402 eV Core-core repulsion = 20068.094209 eV Total energy + Delta-G solvation = -3211.296193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24652 -40.07442 -38.31930 -36.11522 -33.66238 -32.14057 -31.95488 -30.68003 -29.01918 -27.98234 -27.55043 -25.22917 -23.94584 -22.90334 -22.67984 -21.10087 -20.29259 -19.11004 -18.25377 -17.32513 -17.18853 -16.62732 -16.37774 -16.22210 -15.63240 -15.26909 -15.12555 -14.61513 -14.57133 -14.29004 -14.03129 -13.85293 -13.75679 -13.62659 -13.05493 -12.84695 -12.82039 -12.63443 -12.57010 -12.43921 -12.28610 -12.03256 -11.79315 -11.73183 -11.58136 -11.52512 -11.41874 -11.15117 -10.78664 -10.47243 -9.93426 -9.03576 -8.92037 -8.08046 -6.17500 0.40877 0.45060 1.40249 1.42002 1.51941 2.39518 2.43209 2.77746 3.20311 3.40648 3.79079 3.91624 3.94858 4.02526 4.10269 4.31735 4.34485 4.37702 4.44839 4.51225 4.54568 4.61255 4.68800 4.73762 4.77108 4.82511 4.87705 4.91465 4.97300 5.09454 5.16249 5.19871 5.28280 5.29272 5.36472 5.41757 5.45363 5.51561 5.73527 5.75764 5.79466 5.83170 5.87693 6.29499 6.39805 6.45506 6.70535 6.95039 7.50305 8.97739 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.004004 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.208836 B = 6990.575067 C = 7769.228389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.106 4.106 3 C 0.218 3.782 4 H -0.045 1.045 5 C -0.503 4.503 6 H 0.053 0.947 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.514 5.514 14 C 0.034 3.966 15 C -0.111 4.111 16 C -0.040 4.040 17 H 0.098 0.902 18 C -0.110 4.110 19 C -0.085 4.085 20 C -0.210 4.210 21 C 0.108 3.892 22 O -0.333 6.333 23 C 0.019 3.981 24 C -0.157 4.157 25 C -0.076 4.076 26 C 0.064 3.936 27 H 0.031 0.969 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.259 0.741 33 H 0.019 0.981 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.140 0.860 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.121 0.879 42 H 0.145 0.855 43 H 0.150 0.850 44 H 0.061 0.939 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 10.407 15.256 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.144 4.144 3 C 0.111 3.889 4 H -0.027 1.027 5 C -0.541 4.541 6 H 0.071 0.929 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.238 5.238 14 C -0.094 4.094 15 C -0.149 4.149 16 C -0.059 4.059 17 H 0.116 0.884 18 C -0.111 4.111 19 C -0.104 4.104 20 C -0.228 4.228 21 C 0.063 3.937 22 O -0.247 6.247 23 C -0.075 4.075 24 C -0.175 4.175 25 C -0.094 4.094 26 C -0.064 4.064 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.158 0.842 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.139 0.861 42 H 0.163 0.837 43 H 0.168 0.832 44 H 0.079 0.921 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.667 10.458 15.151 18.772 hybrid contribution 1.223 -0.198 -1.474 1.926 sum 4.890 10.260 13.677 17.784 Atomic orbital electron populations 1.21314 0.95646 0.98668 1.00854 1.21410 0.96583 0.97332 0.99107 1.19187 0.90155 0.92005 0.87583 1.02736 1.21240 1.30552 1.11569 0.90759 0.92925 1.25590 0.95529 0.95739 1.01487 1.70010 1.38387 1.24159 1.23473 0.85681 0.78906 0.78337 0.79512 1.20575 1.20935 1.19285 1.64757 1.55372 1.01860 1.01857 1.22870 0.97911 0.97315 0.91277 1.22484 1.02016 0.92598 0.97797 1.20973 0.98393 0.93044 0.93510 0.88376 1.19754 0.93704 0.95918 1.01706 1.20872 0.93031 0.98694 0.97762 1.21352 1.01004 0.93995 1.06458 1.19204 0.90487 0.87986 0.96000 1.86023 1.17892 1.39491 1.81335 1.23303 0.78086 1.04172 1.01983 1.20648 0.89775 1.01465 1.05658 1.21110 1.00546 0.91419 0.96279 1.22976 0.96639 0.91277 0.95534 0.95002 0.94307 0.92649 0.92200 0.95471 0.93149 0.96242 0.90513 0.91316 0.89103 0.86792 0.84203 0.91898 0.92427 0.86058 0.83730 0.83219 0.92092 0.96449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.72 9.48 71.99 0.68 -4.04 16 2 C -0.11 -5.15 5.26 30.60 0.16 -4.99 16 3 C 0.22 11.12 1.44 44.17 0.06 11.18 16 4 H -0.04 -2.60 8.01 -2.39 -0.02 -2.62 16 5 C -0.50 -27.66 6.95 25.60 0.18 -27.48 16 6 H 0.05 2.92 7.13 -2.91 -0.02 2.90 16 7 C 0.01 0.83 5.30 84.65 0.45 1.28 16 8 N -0.92 -53.36 11.32 21.45 0.24 -53.12 16 9 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 13 N -0.51 -21.76 4.27 -861.78 -3.68 -25.44 16 14 C 0.03 1.21 5.42 86.41 0.47 1.68 16 15 C -0.11 -3.07 6.37 31.47 0.20 -2.87 16 16 C -0.04 -1.17 3.28 -10.33 -0.03 -1.21 16 17 H 0.10 2.62 7.95 -2.39 -0.02 2.60 16 18 C -0.11 -2.98 4.95 -19.85 -0.10 -3.07 16 19 C -0.09 -2.36 8.12 22.25 0.18 -2.18 16 20 C -0.21 -5.14 9.04 22.37 0.20 -4.94 16 21 C 0.11 2.63 6.69 22.51 0.15 2.78 16 22 O -0.33 -7.33 10.50 -92.37 -0.97 -8.30 16 23 C 0.02 0.27 9.81 113.37 1.11 1.38 16 24 C -0.16 -3.59 9.99 22.37 0.22 -3.37 16 25 C -0.08 -1.76 9.68 22.25 0.22 -1.54 16 26 C 0.06 2.49 5.22 86.65 0.45 2.94 16 27 H 0.03 1.51 7.40 -2.39 -0.02 1.49 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 2.31 7.46 -2.39 -0.02 2.29 16 30 H 0.06 3.29 6.08 -2.39 -0.01 3.27 16 31 H 0.03 1.20 7.03 -2.39 -0.02 1.18 16 32 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 33 H 0.02 0.73 7.51 -2.39 -0.02 0.72 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.07 1.82 6.68 -2.39 -0.02 1.80 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.11 3.30 7.25 -2.91 -0.02 3.28 16 38 H 0.14 2.84 6.30 -2.91 -0.02 2.83 16 39 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 40 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 41 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 43 H 0.15 2.76 7.98 -2.91 -0.02 2.73 16 44 H 0.06 2.52 7.55 -2.39 -0.02 2.50 16 45 H 0.02 0.74 7.00 -2.39 -0.02 0.72 16 Total: -1.00 -63.40 349.54 3.18 -60.21 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.96 Total: 14.81 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 4.61 Total: -34.44 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -3.43 Total: -78.56 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.97 Total: -8.30 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -63.40 3.18 -60.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.582 kcal (2) G-P(sol) polarization free energy of solvation -63.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds