Wall clock time and date at job start Tue Mar 31 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47314 * 2 1 4 4 H 1.09005 * 109.47195 * 305.00247 * 3 2 1 5 5 C 1.50694 * 109.47250 * 184.99653 * 3 2 1 6 6 H 1.08002 * 120.00387 * 240.00261 * 5 3 2 7 7 C 1.37881 * 119.99681 * 60.00224 * 5 3 2 8 8 N 1.31512 * 120.00118 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99884 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47097 * 89.99793 * 9 7 5 11 11 H 1.48502 * 109.46971 * 210.00234 * 9 7 5 12 12 H 1.48508 * 109.46744 * 329.99763 * 9 7 5 13 13 N 1.46907 * 109.46903 * 64.99803 * 3 2 1 14 14 C 1.47887 * 111.01481 * 69.12508 * 13 3 2 15 15 C 1.54908 * 104.77420 * 146.33028 * 14 13 3 16 16 C 1.55138 * 101.68619 * 322.97931 * 15 14 13 17 17 H 1.09003 * 110.70516 * 277.25131 * 16 15 14 18 18 C 1.50693 * 110.70818 * 154.19493 * 16 15 14 19 19 C 1.38273 * 119.94262 * 301.18080 * 18 16 15 20 20 C 1.38145 * 120.05253 * 179.72664 * 19 18 16 21 21 C 1.38731 * 119.94509 * 0.54187 * 20 19 18 22 22 O 1.35902 * 120.05516 * 179.75013 * 21 20 19 23 23 C 1.42901 * 116.99888 * 359.97438 * 22 21 20 24 24 C 1.38732 * 119.89108 * 359.73063 * 21 20 19 25 25 C 1.38144 * 119.94015 * 359.97438 * 24 21 20 26 26 C 1.47444 * 110.99660 * 190.00196 * 13 3 2 27 27 H 1.09001 * 109.46975 * 59.99892 * 1 2 3 28 28 H 1.08997 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47067 * 300.00138 * 1 2 3 30 30 H 1.09001 * 109.47067 * 239.99862 * 2 1 3 31 31 H 1.09001 * 109.46975 * 120.00108 * 2 1 3 32 32 H 0.96997 * 120.00028 * 180.02562 * 8 7 5 33 33 H 1.08993 * 110.35657 * 27.51601 * 14 13 3 34 34 H 1.09005 * 110.40536 * 265.16436 * 14 13 3 35 35 H 1.09002 * 110.99023 * 204.86730 * 15 14 13 36 36 H 1.08995 * 110.99233 * 81.08878 * 15 14 13 37 37 H 1.07997 * 119.96970 * 359.97438 * 19 18 16 38 38 H 1.08004 * 120.02911 * 180.27409 * 20 19 18 39 39 H 1.08998 * 109.46862 * 299.99749 * 23 22 21 40 40 H 1.08994 * 109.47691 * 59.99940 * 23 22 21 41 41 H 1.09003 * 109.47164 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.02931 * 179.97438 * 24 21 20 43 43 H 1.08003 * 119.97192 * 180.02562 * 25 24 21 44 44 H 1.08998 * 109.89066 * 117.34098 * 26 13 3 45 45 H 1.09001 * 109.89084 * 356.14657 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0051 0.8799 -1.3810 10 1 6.5539 -0.3521 -0.7597 11 1 6.3837 0.9214 -2.8164 12 1 6.5577 2.0719 -0.6887 13 7 1.6514 2.0993 1.2553 14 6 2.3933 1.5325 2.4022 15 6 2.5977 2.7255 3.3689 16 6 2.8433 3.8940 2.3785 17 1 3.8846 3.9141 2.0567 18 6 2.4545 5.2104 3.0004 19 6 1.1590 5.4097 3.4409 20 6 0.8015 6.6135 4.0165 21 6 1.7406 7.6270 4.1423 22 8 1.3900 8.8140 4.7036 23 6 0.0366 8.9497 5.1420 24 6 3.0382 7.4265 3.6944 25 6 3.3923 6.2187 3.1251 26 6 1.9135 3.5490 1.1962 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8294 -0.0619 -2.9494 33 1 3.3560 1.1403 2.0745 34 1 1.8077 0.7495 2.8841 35 1 3.4663 2.5660 4.0078 36 1 1.7032 2.9016 3.9664 37 1 0.4272 4.6221 3.3384 38 1 -0.2093 6.7672 4.3644 39 1 -0.6350 8.8170 4.2938 40 1 -0.1782 8.1938 5.8972 41 1 -0.1093 9.9420 5.5688 42 1 3.7709 8.2141 3.7908 43 1 4.4025 6.0620 2.7766 44 1 0.9770 4.0992 1.2882 45 1 2.4023 3.7994 0.2546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:00 Heat of formation + Delta-G solvation = -15.228910 kcal Electronic energy + Delta-G solvation = -23339.581642 eV Core-core repulsion = 20128.909879 eV Total energy + Delta-G solvation = -3210.671763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.21221 -38.77221 -37.13209 -34.19888 -31.83407 -31.02609 -30.73563 -29.04711 -27.97246 -26.81761 -25.91825 -23.17657 -22.75158 -21.76774 -20.97408 -19.63069 -18.92210 -18.18288 -16.47459 -16.28512 -15.81882 -15.32857 -15.24567 -14.59208 -14.27995 -13.86907 -13.64499 -13.26082 -13.03910 -12.80265 -12.66770 -12.38314 -12.31254 -12.15530 -11.85960 -11.50673 -11.30487 -11.12860 -10.94961 -10.84960 -10.67477 -10.58977 -10.44334 -10.25836 -10.12080 -9.93011 -9.56461 -9.43809 -9.01108 -8.90810 -8.35689 -7.93866 -7.10247 -5.98484 -4.11351 1.42582 1.51446 3.20729 3.26019 3.33789 3.35677 3.83446 4.39086 4.78153 4.89860 4.97001 4.98932 5.00875 5.17383 5.26659 5.27006 5.37239 5.48257 5.49933 5.65688 5.67943 5.83945 6.07339 6.12453 6.22308 6.33574 6.36379 6.38036 6.46411 6.50533 6.63707 6.71040 6.73089 6.76861 6.84231 6.88281 7.01827 7.11939 7.20722 7.37910 7.39308 7.63353 7.76933 8.00431 8.17323 8.31943 8.48344 8.99401 9.55508 11.00757 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.003957 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.943206 B = 7073.481396 C = 7898.366200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.208 3.792 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.527 5.527 14 C 0.042 3.958 15 C -0.119 4.119 16 C -0.067 4.067 17 H 0.080 0.920 18 C -0.091 4.091 19 C -0.072 4.072 20 C -0.206 4.206 21 C 0.111 3.889 22 O -0.322 6.322 23 C 0.029 3.971 24 C -0.151 4.151 25 C -0.081 4.081 26 C 0.062 3.938 27 H 0.038 0.962 28 H 0.024 0.976 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.030 0.970 32 H 0.261 0.739 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.057 0.943 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 11.402 12.384 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.101 3.899 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.251 5.251 14 C -0.086 4.086 15 C -0.157 4.157 16 C -0.086 4.086 17 H 0.099 0.901 18 C -0.092 4.092 19 C -0.090 4.090 20 C -0.225 4.225 21 C 0.066 3.934 22 O -0.236 6.236 23 C -0.066 4.066 24 C -0.170 4.170 25 C -0.099 4.099 26 C -0.066 4.066 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.114 0.886 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.076 0.924 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.182 11.381 12.274 17.522 hybrid contribution 1.690 0.004 -0.304 1.717 sum -3.492 11.385 11.970 16.885 Atomic orbital electron populations 1.21707 0.98963 0.98333 1.00505 1.21540 0.92170 0.99192 1.01777 1.19455 0.93051 0.91319 0.86089 0.94606 1.21757 0.92780 1.38073 1.05389 0.92308 1.24921 0.97702 0.95107 0.95718 1.69875 1.34746 1.38235 1.09438 0.86711 0.86352 0.78377 0.77261 1.20715 1.21235 1.20036 1.63925 1.54299 1.01475 1.05374 1.23019 0.98866 0.95692 0.91003 1.22800 1.00668 0.95034 0.97194 1.21375 1.00624 0.90630 0.96011 0.90115 1.19845 0.93508 0.95949 0.99849 1.20876 0.96122 0.96235 0.95803 1.21189 0.99368 0.94874 1.07023 1.18994 0.94099 0.84930 0.95358 1.86036 1.29938 1.32841 1.74806 1.23002 0.81501 1.02874 0.99271 1.20355 0.94045 0.98700 1.03875 1.20936 0.99514 0.91935 0.97501 1.22698 0.96446 0.90773 0.96719 0.94332 0.95689 0.93385 0.89105 0.95112 0.92922 0.91150 0.92268 0.92050 0.91687 0.85337 0.85825 0.92724 0.92791 0.88561 0.85621 0.85474 0.92450 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.80 37.16 0.36 -2.45 16 2 C -0.11 -2.55 5.24 -26.73 -0.14 -2.69 16 3 C 0.21 5.02 1.51 -68.86 -0.10 4.92 16 4 H 0.04 0.97 8.03 -51.93 -0.42 0.56 16 5 C -0.54 -14.02 6.65 -34.44 -0.23 -14.25 16 6 H 0.06 1.52 6.42 -52.49 -0.34 1.18 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.59 11.29 55.43 0.63 -23.96 16 9 Si 0.88 20.79 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.53 -10.90 4.58 -224.64 -1.03 -11.93 16 14 C 0.04 0.80 5.33 -2.27 -0.01 0.79 16 15 C -0.12 -1.89 6.46 -24.59 -0.16 -2.05 16 16 C -0.07 -1.10 3.15 -89.95 -0.28 -1.39 16 17 H 0.08 1.41 7.94 -51.93 -0.41 0.99 16 18 C -0.09 -1.33 4.95 -104.60 -0.52 -1.85 16 19 C -0.07 -0.99 8.10 -39.60 -0.32 -1.31 16 20 C -0.21 -2.56 9.04 -39.43 -0.36 -2.91 16 21 C 0.11 1.44 6.69 -39.22 -0.26 1.18 16 22 O -0.32 -3.84 10.50 -19.43 -0.20 -4.04 16 23 C 0.03 0.23 9.81 101.05 0.99 1.22 16 24 C -0.15 -1.96 9.99 -39.43 -0.39 -2.36 16 25 C -0.08 -1.10 9.68 -39.61 -0.38 -1.48 16 26 C 0.06 1.18 5.93 -2.83 -0.02 1.16 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.94 7.75 -51.93 -0.40 0.54 16 30 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 31 H 0.03 0.71 7.34 -51.93 -0.38 0.33 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.07 1.51 5.58 -51.93 -0.29 1.22 16 34 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.97 7.11 -51.93 -0.37 0.60 16 37 H 0.13 1.71 7.30 -52.49 -0.38 1.33 16 38 H 0.12 1.25 6.30 -52.48 -0.33 0.92 16 39 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 40 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.13 1.57 7.97 -52.48 -0.42 1.15 16 44 H 0.06 1.03 6.76 -51.93 -0.35 0.68 16 45 H 0.06 1.28 7.21 -51.93 -0.37 0.90 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -27.92 348.90 -9.53 -37.45 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.24 Total: 3.21 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -1.92 Total: -21.76 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.40 Total: -35.89 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.20 Total: -4.04 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.92 -9.53 -37.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.226 kcal (2) G-P(sol) polarization free energy of solvation -27.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds