Wall clock time and date at job start Tue Mar 31 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47314 * 2 1 4 4 H 1.09005 * 109.47195 * 305.00247 * 3 2 1 5 5 C 1.50694 * 109.47250 * 184.99653 * 3 2 1 6 6 H 1.08002 * 120.00387 * 240.00261 * 5 3 2 7 7 C 1.37881 * 119.99681 * 60.00224 * 5 3 2 8 8 N 1.31512 * 120.00118 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99884 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47097 * 89.99793 * 9 7 5 11 11 H 1.48502 * 109.46971 * 210.00234 * 9 7 5 12 12 H 1.48508 * 109.46744 * 329.99763 * 9 7 5 13 13 N 1.46907 * 109.46903 * 64.99803 * 3 2 1 14 14 C 1.47887 * 111.01481 * 69.12508 * 13 3 2 15 15 C 1.54908 * 104.77420 * 146.33028 * 14 13 3 16 16 C 1.55138 * 101.68619 * 322.97931 * 15 14 13 17 17 H 1.09003 * 110.70516 * 277.25131 * 16 15 14 18 18 C 1.50693 * 110.70818 * 154.19493 * 16 15 14 19 19 C 1.38273 * 119.94262 * 301.18080 * 18 16 15 20 20 C 1.38145 * 120.05253 * 179.72664 * 19 18 16 21 21 C 1.38731 * 119.94509 * 0.54187 * 20 19 18 22 22 O 1.35902 * 120.05516 * 179.75013 * 21 20 19 23 23 C 1.42901 * 116.99888 * 359.97438 * 22 21 20 24 24 C 1.38732 * 119.89108 * 359.73063 * 21 20 19 25 25 C 1.38144 * 119.94015 * 359.97438 * 24 21 20 26 26 C 1.47444 * 110.99660 * 190.00196 * 13 3 2 27 27 H 1.09001 * 109.46975 * 59.99892 * 1 2 3 28 28 H 1.08997 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47067 * 300.00138 * 1 2 3 30 30 H 1.09001 * 109.47067 * 239.99862 * 2 1 3 31 31 H 1.09001 * 109.46975 * 120.00108 * 2 1 3 32 32 H 0.96997 * 120.00028 * 180.02562 * 8 7 5 33 33 H 1.08993 * 110.35657 * 27.51601 * 14 13 3 34 34 H 1.09005 * 110.40536 * 265.16436 * 14 13 3 35 35 H 1.09002 * 110.99023 * 204.86730 * 15 14 13 36 36 H 1.08995 * 110.99233 * 81.08878 * 15 14 13 37 37 H 1.07997 * 119.96970 * 359.97438 * 19 18 16 38 38 H 1.08004 * 120.02911 * 180.27409 * 20 19 18 39 39 H 1.08998 * 109.46862 * 299.99749 * 23 22 21 40 40 H 1.08994 * 109.47691 * 59.99940 * 23 22 21 41 41 H 1.09003 * 109.47164 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.02931 * 179.97438 * 24 21 20 43 43 H 1.08003 * 119.97192 * 180.02562 * 25 24 21 44 44 H 1.08998 * 109.89066 * 117.34098 * 26 13 3 45 45 H 1.09001 * 109.89084 * 356.14657 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0051 0.8799 -1.3810 10 1 6.5539 -0.3521 -0.7597 11 1 6.3837 0.9214 -2.8164 12 1 6.5577 2.0719 -0.6887 13 7 1.6514 2.0993 1.2553 14 6 2.3933 1.5325 2.4022 15 6 2.5977 2.7255 3.3689 16 6 2.8433 3.8940 2.3785 17 1 3.8846 3.9141 2.0567 18 6 2.4545 5.2104 3.0004 19 6 1.1590 5.4097 3.4409 20 6 0.8015 6.6135 4.0165 21 6 1.7406 7.6270 4.1423 22 8 1.3900 8.8140 4.7036 23 6 0.0366 8.9497 5.1420 24 6 3.0382 7.4265 3.6944 25 6 3.3923 6.2187 3.1251 26 6 1.9135 3.5490 1.1962 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8294 -0.0619 -2.9494 33 1 3.3560 1.1403 2.0745 34 1 1.8077 0.7495 2.8841 35 1 3.4663 2.5660 4.0078 36 1 1.7032 2.9016 3.9664 37 1 0.4272 4.6221 3.3384 38 1 -0.2093 6.7672 4.3644 39 1 -0.6350 8.8170 4.2938 40 1 -0.1782 8.1938 5.8972 41 1 -0.1093 9.9420 5.5688 42 1 3.7709 8.2141 3.7908 43 1 4.4025 6.0620 2.7766 44 1 0.9770 4.0992 1.2882 45 1 2.4023 3.7994 0.2546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:00 Heat of formation + Delta-G solvation = -29.907644 kcal Electronic energy + Delta-G solvation = -23340.218159 eV Core-core repulsion = 20128.909879 eV Total energy + Delta-G solvation = -3211.308280 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23273 -40.11885 -38.30841 -35.88067 -33.70052 -32.23749 -31.94139 -30.49751 -29.08402 -28.24335 -27.35438 -24.89881 -23.91476 -22.84571 -22.62335 -20.93751 -20.73163 -19.08298 -18.32017 -17.41396 -17.04800 -16.58991 -16.49141 -15.99241 -15.68986 -15.25614 -14.88630 -14.61271 -14.38165 -14.16130 -14.04700 -13.93391 -13.71372 -13.40831 -13.09228 -12.95382 -12.76336 -12.71903 -12.48254 -12.43085 -12.18406 -11.99935 -11.82923 -11.70306 -11.58996 -11.57815 -11.30944 -11.21161 -10.88961 -10.41085 -9.91065 -9.00055 -8.84535 -8.00725 -6.22111 0.43099 0.47987 1.37523 1.39778 1.47671 2.41181 2.42272 2.80414 3.17451 3.55466 3.79867 3.88674 3.99687 4.03276 4.12055 4.35862 4.42668 4.45663 4.49084 4.57177 4.60900 4.66728 4.74082 4.76105 4.78103 4.87127 4.93666 4.98386 5.12523 5.13597 5.16290 5.22884 5.29175 5.35387 5.43127 5.45988 5.50575 5.53974 5.67096 5.80703 5.82024 5.84865 6.09189 6.22214 6.43860 6.49230 6.64780 6.99888 7.47773 8.94485 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.003957 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.943206 B = 7073.481396 C = 7898.366200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.216 3.784 4 H -0.002 1.002 5 C -0.544 4.544 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.526 5.526 14 C 0.041 3.959 15 C -0.106 4.106 16 C -0.056 4.056 17 H 0.066 0.934 18 C -0.107 4.107 19 C -0.076 4.076 20 C -0.204 4.204 21 C 0.108 3.892 22 O -0.336 6.336 23 C 0.018 3.982 24 C -0.159 4.159 25 C -0.086 4.086 26 C 0.063 3.937 27 H 0.030 0.970 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.148 0.852 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.119 0.881 42 H 0.139 0.861 43 H 0.133 0.867 44 H 0.070 0.930 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.269 12.548 14.490 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.016 0.984 5 C -0.583 4.583 6 H 0.074 0.926 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.249 5.249 14 C -0.087 4.087 15 C -0.144 4.144 16 C -0.076 4.076 17 H 0.084 0.916 18 C -0.107 4.107 19 C -0.094 4.094 20 C -0.223 4.223 21 C 0.063 3.937 22 O -0.250 6.250 23 C -0.076 4.076 24 C -0.178 4.178 25 C -0.104 4.104 26 C -0.065 4.065 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.137 0.863 42 H 0.157 0.843 43 H 0.151 0.849 44 H 0.088 0.912 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.697 12.538 14.399 19.925 hybrid contribution 1.780 -0.253 -0.915 2.018 sum -3.917 12.285 13.485 18.657 Atomic orbital electron populations 1.21568 0.96414 0.99730 1.00586 1.21387 0.94422 0.98247 1.00152 1.19199 0.91944 0.91531 0.86537 0.98428 1.22007 0.93884 1.37305 1.05131 0.92564 1.25618 1.01598 0.95137 0.95643 1.70008 1.36185 1.39152 1.09869 0.85784 0.81727 0.78451 0.77059 1.20252 1.21208 1.19585 1.63886 1.54367 1.02282 1.04363 1.23019 0.97372 0.97208 0.91076 1.22738 1.02164 0.92913 0.96558 1.21171 0.99006 0.92278 0.95097 0.91594 1.19684 0.94476 0.95254 1.01312 1.20941 0.95653 0.96941 0.95899 1.21408 1.00471 0.94081 1.06294 1.19168 0.94170 0.85476 0.94842 1.86029 1.32213 1.32187 1.74556 1.23321 0.79697 1.04678 0.99893 1.20551 0.94754 0.98757 1.03708 1.21038 0.99777 0.92034 0.97558 1.22686 0.97439 0.89891 0.96472 0.95081 0.93621 0.92355 0.92134 0.95164 0.93076 0.93791 0.91351 0.90484 0.89945 0.85014 0.83416 0.92009 0.91750 0.86289 0.84332 0.84865 0.91159 0.95450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.80 71.98 0.71 -4.37 16 2 C -0.10 -4.96 5.24 30.60 0.16 -4.80 16 3 C 0.22 10.74 1.51 44.17 0.07 10.80 16 4 H 0.00 -0.13 8.03 -2.38 -0.02 -0.15 16 5 C -0.54 -28.97 6.65 25.60 0.17 -28.80 16 6 H 0.06 2.97 6.42 -2.91 -0.02 2.95 16 7 C 0.02 1.07 5.29 84.66 0.45 1.52 16 8 N -0.91 -52.25 11.29 21.45 0.24 -52.00 16 9 Si 0.94 43.36 29.54 68.60 2.03 45.38 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 N -0.53 -21.85 4.58 -864.61 -3.96 -25.82 16 14 C 0.04 1.54 5.33 86.77 0.46 2.00 16 15 C -0.11 -3.19 6.46 31.98 0.21 -2.99 16 16 C -0.06 -1.82 3.15 -10.36 -0.03 -1.85 16 17 H 0.07 2.31 7.94 -2.39 -0.02 2.29 16 18 C -0.11 -2.99 4.95 -19.85 -0.10 -3.08 16 19 C -0.08 -1.93 8.10 22.26 0.18 -1.75 16 20 C -0.20 -4.54 9.04 22.37 0.20 -4.34 16 21 C 0.11 2.57 6.69 22.51 0.15 2.72 16 22 O -0.34 -7.15 10.50 -92.45 -0.97 -8.12 16 23 C 0.02 0.23 9.81 113.37 1.11 1.34 16 24 C -0.16 -3.87 9.99 22.37 0.22 -3.65 16 25 C -0.09 -2.24 9.68 22.25 0.22 -2.02 16 26 C 0.06 2.43 5.93 86.65 0.51 2.95 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 30 H 0.06 3.29 5.95 -2.39 -0.01 3.27 16 31 H 0.03 1.41 7.34 -2.39 -0.02 1.39 16 32 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.04 1.89 5.58 -2.39 -0.01 1.88 16 34 H 0.07 2.43 8.12 -2.38 -0.02 2.41 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.08 2.23 7.11 -2.39 -0.02 2.22 16 37 H 0.13 3.20 7.30 -2.91 -0.02 3.18 16 38 H 0.15 2.48 6.30 -2.91 -0.02 2.46 16 39 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 40 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 41 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.13 3.19 7.97 -2.91 -0.02 3.16 16 44 H 0.07 2.50 6.76 -2.39 -0.02 2.48 16 45 H 0.03 1.21 7.21 -2.39 -0.02 1.19 16 Total: -1.00 -60.88 348.90 2.98 -57.89 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.96 Total: 18.97 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 4.69 Total: -36.31 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -3.72 Total: -77.82 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.97 Total: -8.12 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -60.88 2.98 -57.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.986 kcal (2) G-P(sol) polarization free energy of solvation -60.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds