Wall clock time and date at job start Tue Mar 31 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47603 * 2 1 4 4 H 1.08999 * 109.46829 * 304.60032 * 3 2 1 5 5 C 1.50698 * 109.47148 * 184.59820 * 3 2 1 6 6 H 1.07994 * 119.99880 * 301.38911 * 5 3 2 7 7 C 1.37877 * 119.99533 * 121.38724 * 5 3 2 8 8 N 1.31519 * 119.99871 * 171.16296 * 7 5 3 9 9 Si 1.86795 * 120.00384 * 351.16598 * 7 5 3 10 10 H 1.48505 * 109.47148 * 91.48770 * 9 7 5 11 11 H 1.48500 * 109.47485 * 211.48507 * 9 7 5 12 12 H 1.48500 * 109.47325 * 331.48787 * 9 7 5 13 13 N 1.46899 * 109.47004 * 64.59493 * 3 2 1 14 14 C 1.48726 * 111.01015 * 66.25334 * 13 3 2 15 15 C 1.54382 * 104.51508 * 158.96638 * 14 13 3 16 16 C 1.54266 * 105.14775 * 336.26448 * 15 14 13 17 17 C 1.48559 * 110.99770 * 181.75827 * 13 3 2 18 18 H 1.09006 * 110.51160 * 319.79075 * 17 13 3 19 19 C 1.50692 * 110.40991 * 82.18733 * 17 13 3 20 20 C 1.38286 * 119.97433 * 36.35029 * 19 17 13 21 21 C 1.38250 * 120.11402 * 179.72882 * 20 19 17 22 22 C 1.38168 * 120.05120 * 0.54643 * 21 20 19 23 23 C 1.38714 * 119.94398 * 359.72699 * 22 21 20 24 24 O 1.35900 * 120.05186 * 179.97438 * 23 22 21 25 25 C 1.42900 * 117.00130 * 0.02562 * 24 23 22 26 26 C 1.38128 * 119.97182 * 216.62342 * 19 17 13 27 27 H 1.08999 * 109.47849 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47122 * 300.00548 * 1 2 3 29 29 H 1.09007 * 109.47333 * 59.99884 * 1 2 3 30 30 H 1.08998 * 109.47122 * 239.99452 * 2 1 3 31 31 H 1.09007 * 109.46592 * 120.00169 * 2 1 3 32 32 H 0.96993 * 120.00123 * 180.02562 * 8 7 5 33 33 H 1.09002 * 110.39051 * 40.24556 * 14 13 3 34 34 H 1.09005 * 110.51042 * 277.74515 * 14 13 3 35 35 H 1.09006 * 110.32364 * 217.32166 * 15 14 13 36 36 H 1.08997 * 110.32400 * 95.21442 * 15 14 13 37 37 H 1.09006 * 110.31861 * 118.84881 * 16 15 14 38 38 H 1.08994 * 110.32185 * 240.95172 * 16 15 14 39 39 H 1.08000 * 119.94564 * 359.97438 * 20 19 17 40 40 H 1.07997 * 119.97013 * 180.25742 * 21 20 19 41 41 H 1.07999 * 120.02587 * 179.75561 * 22 21 20 42 42 H 1.08997 * 109.47399 * 300.00109 * 25 24 23 43 43 H 1.08997 * 109.47201 * 60.00596 * 25 24 23 44 44 H 1.09007 * 109.47074 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.02692 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6110 1.9795 -0.8459 5 6 3.5427 1.4439 -0.1139 6 1 4.1410 0.9361 0.6281 7 6 4.1537 2.0935 -1.1655 8 7 5.4600 2.2453 -1.1749 9 14 3.1261 2.7580 -2.5767 10 1 2.7471 4.1656 -2.2932 11 1 3.9153 2.7014 -3.8333 12 1 1.8987 1.9354 -2.7256 13 7 1.6431 2.1022 1.2511 14 6 2.3302 1.4886 2.4187 15 6 2.2622 2.5691 3.5193 16 6 2.1007 3.9044 2.7639 17 6 2.0857 3.5202 1.2688 18 1 3.0844 3.6140 0.8422 19 6 1.1095 4.3849 0.5137 20 6 -0.2449 4.1120 0.5733 21 6 -1.1435 4.9068 -0.1137 22 6 -0.6892 5.9694 -0.8710 23 6 0.6693 6.2418 -0.9370 24 8 1.1187 7.2861 -1.6816 25 6 0.1360 8.0621 -2.3703 26 6 1.5687 5.4461 -0.2419 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 5.8898 2.7026 -1.9144 33 1 3.3675 1.2614 2.1727 34 1 1.8080 0.5868 2.7386 35 1 3.1827 2.5733 4.1031 36 1 1.4039 2.3950 4.1682 37 1 1.1622 4.3849 3.0408 38 1 2.9409 4.5647 2.9784 39 1 -0.6016 3.2789 1.1608 40 1 -2.2011 4.6940 -0.0622 41 1 -1.3912 6.5876 -1.4107 42 1 -0.4118 7.4230 -3.0627 43 1 -0.5571 8.4940 -1.6485 44 1 0.6276 8.8617 -2.9246 45 1 2.6268 5.6564 -0.2914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:17 Heat of formation + Delta-G solvation = -12.437794 kcal Electronic energy + Delta-G solvation = -24586.204307 eV Core-core repulsion = 21375.653577 eV Total energy + Delta-G solvation = -3210.550731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.92913 -38.64999 -36.73517 -34.14266 -32.10564 -31.29673 -30.05674 -29.64790 -27.34041 -26.81268 -26.51631 -23.00970 -22.15789 -22.06563 -20.96990 -19.58679 -18.70976 -17.38169 -16.83537 -15.98810 -15.59257 -15.56485 -15.13712 -14.96002 -14.13295 -13.82729 -13.35508 -13.28299 -12.92687 -12.65127 -12.58479 -12.54599 -12.30065 -11.96567 -11.82010 -11.51346 -11.40080 -11.00783 -10.95541 -10.82976 -10.71028 -10.61529 -10.33647 -10.28252 -9.99778 -9.95934 -9.70499 -9.52762 -9.08471 -8.59350 -8.29735 -7.78569 -7.20146 -6.14917 -4.16547 1.72744 1.88594 3.31698 3.39684 3.44097 3.47682 4.17597 4.39666 4.93197 5.02587 5.16100 5.16561 5.24581 5.30398 5.38198 5.46440 5.47367 5.67685 5.74044 5.85554 5.90479 5.99739 6.04478 6.10196 6.25303 6.25910 6.29933 6.40748 6.44223 6.51388 6.59951 6.65237 6.74359 6.76168 6.85520 6.89604 6.96914 6.99233 7.12814 7.21501 7.25534 7.32187 7.63881 7.70778 7.93680 8.25628 8.46146 8.90394 9.50474 10.96701 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.007638 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.773938 B = 3664.928608 C = 4382.127331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C 0.159 3.841 4 H 0.049 0.951 5 C -0.541 4.541 6 H 0.077 0.923 7 C 0.084 3.916 8 N -0.892 5.892 9 Si 0.857 3.143 10 H -0.259 1.259 11 H -0.292 1.292 12 H -0.266 1.266 13 N -0.498 5.498 14 C 0.034 3.966 15 C -0.121 4.121 16 C -0.110 4.110 17 C 0.097 3.903 18 H 0.087 0.913 19 C -0.015 4.015 20 C -0.126 4.126 21 C -0.095 4.095 22 C -0.220 4.220 23 C 0.115 3.885 24 O -0.320 6.320 25 C 0.030 3.970 26 C -0.141 4.141 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.264 0.736 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.705 6.827 3.182 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 C 0.053 3.947 4 H 0.067 0.933 5 C -0.580 4.580 6 H 0.095 0.905 7 C -0.120 4.120 8 N -0.529 5.529 9 Si 0.684 3.316 10 H -0.184 1.184 11 H -0.219 1.219 12 H -0.191 1.191 13 N -0.222 5.222 14 C -0.094 4.094 15 C -0.159 4.159 16 C -0.148 4.148 17 C -0.012 4.012 18 H 0.105 0.895 19 C -0.016 4.016 20 C -0.144 4.144 21 C -0.113 4.113 22 C -0.239 4.239 23 C 0.071 3.929 24 O -0.234 6.234 25 C -0.065 4.065 26 C -0.160 4.160 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.151 0.849 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.113 0.887 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.939 6.901 3.071 14.128 hybrid contribution 0.254 0.469 -1.275 1.382 sum -11.684 7.370 1.796 13.931 Atomic orbital electron populations 1.21752 0.97774 0.99100 1.01441 1.21562 0.93506 0.98537 1.00595 1.19906 0.94441 0.91280 0.89114 0.93327 1.21463 0.90625 1.34695 1.11190 0.90512 1.25052 0.94615 0.94702 0.97647 1.69934 1.09047 1.42033 1.31866 0.87143 0.80721 0.81149 0.82543 1.18355 1.21862 1.19065 1.65800 1.52008 1.00184 1.04187 1.22975 0.99773 0.96164 0.90505 1.22262 1.00509 0.95318 0.97809 1.22255 1.01014 0.97219 0.94333 1.21457 0.96890 0.89374 0.93487 0.89546 1.19690 0.94494 0.93084 0.94347 1.21012 0.92449 0.99891 1.01051 1.20889 0.99288 0.94538 0.96564 1.21069 0.93945 1.02536 1.06313 1.18931 0.92453 0.88571 0.92956 1.86069 1.35714 1.40721 1.60916 1.22963 0.92696 0.94861 0.95993 1.20373 0.99394 0.96502 0.99721 0.94965 0.92228 0.94150 0.92982 0.93188 0.92644 0.91515 0.91918 0.92354 0.92337 0.91999 0.92097 0.84925 0.86441 0.86332 0.93007 0.92983 0.88701 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.80 37.15 0.36 -2.16 16 2 C -0.10 -2.13 5.34 -26.73 -0.14 -2.27 16 3 C 0.16 3.61 1.71 -68.86 -0.12 3.49 16 4 H 0.05 1.19 4.43 -51.93 -0.23 0.96 16 5 C -0.54 -14.27 6.61 -34.44 -0.23 -14.50 16 6 H 0.08 2.21 6.54 -52.49 -0.34 1.87 16 7 C 0.08 2.33 5.22 -17.82 -0.09 2.24 16 8 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 9 Si 0.86 21.60 27.15 -169.99 -4.61 16.99 16 10 H -0.26 -6.43 6.17 56.52 0.35 -6.08 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 12 H -0.27 -6.63 6.55 56.52 0.37 -6.26 16 13 N -0.50 -9.90 3.67 -216.83 -0.80 -10.70 16 14 C 0.03 0.63 5.43 -2.09 -0.01 0.62 16 15 C -0.12 -1.92 6.99 -25.34 -0.18 -2.09 16 16 C -0.11 -1.84 6.54 -25.35 -0.17 -2.00 16 17 C 0.10 1.92 2.32 -67.23 -0.16 1.76 16 18 H 0.09 2.05 6.49 -51.93 -0.34 1.71 16 19 C -0.02 -0.30 4.59 -104.65 -0.48 -0.78 16 20 C -0.13 -2.16 9.29 -39.56 -0.37 -2.53 16 21 C -0.09 -1.44 10.04 -39.60 -0.40 -1.84 16 22 C -0.22 -3.39 9.04 -39.43 -0.36 -3.75 16 23 C 0.12 2.06 6.69 -39.22 -0.26 1.79 16 24 O -0.32 -5.35 10.50 -19.42 -0.20 -5.55 16 25 C 0.03 0.34 9.81 101.05 0.99 1.33 16 26 C -0.14 -2.76 8.71 -39.43 -0.34 -3.11 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 1.02 7.74 -51.93 -0.40 0.62 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 1.00 6.92 -51.92 -0.36 0.64 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 1.44 5.64 -51.93 -0.29 1.14 16 34 H 0.06 1.09 7.61 -51.93 -0.40 0.70 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.96 7.81 -51.93 -0.41 0.56 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.13 2.21 7.63 -52.49 -0.40 1.81 16 40 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.12 1.48 6.30 -52.49 -0.33 1.15 16 42 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 43 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 44 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 45 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 347.07 15.07 5.23 5.23 Total: -1.00 -29.39 347.07 -8.87 -38.26 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.32 Total: 5.18 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -1.94 Total: -23.78 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.02 Total: -36.32 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.20 Total: -5.55 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.61 Total: 16.99 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.39 -8.87 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.821 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds