Wall clock time and date at job start Tue Mar 31 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47603 * 2 1 4 4 H 1.08999 * 109.46829 * 304.60032 * 3 2 1 5 5 C 1.50698 * 109.47148 * 184.59820 * 3 2 1 6 6 H 1.07994 * 119.99880 * 301.38911 * 5 3 2 7 7 C 1.37877 * 119.99533 * 121.38724 * 5 3 2 8 8 N 1.31519 * 119.99871 * 171.16296 * 7 5 3 9 9 Si 1.86795 * 120.00384 * 351.16598 * 7 5 3 10 10 H 1.48505 * 109.47148 * 91.48770 * 9 7 5 11 11 H 1.48500 * 109.47485 * 211.48507 * 9 7 5 12 12 H 1.48500 * 109.47325 * 331.48787 * 9 7 5 13 13 N 1.46899 * 109.47004 * 64.59493 * 3 2 1 14 14 C 1.48726 * 111.01015 * 66.25334 * 13 3 2 15 15 C 1.54382 * 104.51508 * 158.96638 * 14 13 3 16 16 C 1.54266 * 105.14775 * 336.26448 * 15 14 13 17 17 C 1.48559 * 110.99770 * 181.75827 * 13 3 2 18 18 H 1.09006 * 110.51160 * 319.79075 * 17 13 3 19 19 C 1.50692 * 110.40991 * 82.18733 * 17 13 3 20 20 C 1.38286 * 119.97433 * 36.35029 * 19 17 13 21 21 C 1.38250 * 120.11402 * 179.72882 * 20 19 17 22 22 C 1.38168 * 120.05120 * 0.54643 * 21 20 19 23 23 C 1.38714 * 119.94398 * 359.72699 * 22 21 20 24 24 O 1.35900 * 120.05186 * 179.97438 * 23 22 21 25 25 C 1.42900 * 117.00130 * 0.02562 * 24 23 22 26 26 C 1.38128 * 119.97182 * 216.62342 * 19 17 13 27 27 H 1.08999 * 109.47849 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47122 * 300.00548 * 1 2 3 29 29 H 1.09007 * 109.47333 * 59.99884 * 1 2 3 30 30 H 1.08998 * 109.47122 * 239.99452 * 2 1 3 31 31 H 1.09007 * 109.46592 * 120.00169 * 2 1 3 32 32 H 0.96993 * 120.00123 * 180.02562 * 8 7 5 33 33 H 1.09002 * 110.39051 * 40.24556 * 14 13 3 34 34 H 1.09005 * 110.51042 * 277.74515 * 14 13 3 35 35 H 1.09006 * 110.32364 * 217.32166 * 15 14 13 36 36 H 1.08997 * 110.32400 * 95.21442 * 15 14 13 37 37 H 1.09006 * 110.31861 * 118.84881 * 16 15 14 38 38 H 1.08994 * 110.32185 * 240.95172 * 16 15 14 39 39 H 1.08000 * 119.94564 * 359.97438 * 20 19 17 40 40 H 1.07997 * 119.97013 * 180.25742 * 21 20 19 41 41 H 1.07999 * 120.02587 * 179.75561 * 22 21 20 42 42 H 1.08997 * 109.47399 * 300.00109 * 25 24 23 43 43 H 1.08997 * 109.47201 * 60.00596 * 25 24 23 44 44 H 1.09007 * 109.47074 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.02692 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6110 1.9795 -0.8459 5 6 3.5427 1.4439 -0.1139 6 1 4.1410 0.9361 0.6281 7 6 4.1537 2.0935 -1.1655 8 7 5.4600 2.2453 -1.1749 9 14 3.1261 2.7580 -2.5767 10 1 2.7471 4.1656 -2.2932 11 1 3.9153 2.7014 -3.8333 12 1 1.8987 1.9354 -2.7256 13 7 1.6431 2.1022 1.2511 14 6 2.3302 1.4886 2.4187 15 6 2.2622 2.5691 3.5193 16 6 2.1007 3.9044 2.7639 17 6 2.0857 3.5202 1.2688 18 1 3.0844 3.6140 0.8422 19 6 1.1095 4.3849 0.5137 20 6 -0.2449 4.1120 0.5733 21 6 -1.1435 4.9068 -0.1137 22 6 -0.6892 5.9694 -0.8710 23 6 0.6693 6.2418 -0.9370 24 8 1.1187 7.2861 -1.6816 25 6 0.1360 8.0621 -2.3703 26 6 1.5687 5.4461 -0.2419 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 5.8898 2.7026 -1.9144 33 1 3.3675 1.2614 2.1727 34 1 1.8080 0.5868 2.7386 35 1 3.1827 2.5733 4.1031 36 1 1.4039 2.3950 4.1682 37 1 1.1622 4.3849 3.0408 38 1 2.9409 4.5647 2.9784 39 1 -0.6016 3.2789 1.1608 40 1 -2.2011 4.6940 -0.0622 41 1 -1.3912 6.5876 -1.4107 42 1 -0.4118 7.4230 -3.0627 43 1 -0.5571 8.4940 -1.6485 44 1 0.6276 8.8617 -2.9246 45 1 2.6268 5.6564 -0.2914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:16 Heat of formation + Delta-G solvation = -29.503897 kcal Electronic energy + Delta-G solvation = -24586.944349 eV Core-core repulsion = 21375.653577 eV Total energy + Delta-G solvation = -3211.290773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23881 -40.11411 -38.05902 -35.81742 -34.14971 -32.63620 -31.36558 -31.13910 -28.64610 -28.36219 -27.94183 -24.78546 -23.49780 -23.44497 -22.43357 -20.99081 -20.42948 -19.05686 -18.51751 -17.34065 -16.97283 -16.68579 -16.63913 -16.38726 -15.96859 -15.24220 -14.94857 -14.70093 -14.51914 -14.23619 -14.11674 -13.94629 -13.69527 -13.55401 -13.25366 -12.82404 -12.77510 -12.74592 -12.56888 -12.24629 -12.17079 -11.95929 -11.84579 -11.79398 -11.67180 -11.54435 -11.38957 -11.13114 -10.97618 -10.71559 -9.66884 -9.06627 -8.97131 -8.35355 -6.36573 0.42055 0.57769 1.24356 1.33030 1.34081 2.27108 2.38016 2.86375 2.99563 3.51459 3.86728 3.93559 4.00643 4.11581 4.29227 4.31317 4.37167 4.38055 4.44358 4.54799 4.57598 4.58933 4.66145 4.68556 4.75100 4.85675 4.88039 4.96117 5.08406 5.09916 5.15627 5.23185 5.26700 5.29823 5.36428 5.39560 5.49928 5.52912 5.57313 5.65260 5.68300 5.82436 5.94441 6.16079 6.39641 6.49517 6.51442 6.73737 7.32442 8.80026 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.007638 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.773938 B = 3664.928608 C = 4382.127331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 C 0.165 3.835 4 H 0.034 0.966 5 C -0.525 4.525 6 H 0.043 0.957 7 C 0.035 3.965 8 N -0.939 5.939 9 Si 0.910 3.090 10 H -0.259 1.259 11 H -0.296 1.296 12 H -0.255 1.255 13 N -0.480 5.480 14 C 0.031 3.969 15 C -0.111 4.111 16 C -0.106 4.106 17 C 0.096 3.904 18 H 0.034 0.966 19 C -0.029 4.029 20 C -0.133 4.133 21 C -0.082 4.082 22 C -0.213 4.213 23 C 0.107 3.893 24 O -0.348 6.348 25 C 0.019 3.981 26 C -0.175 4.175 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.262 0.738 33 H 0.027 0.973 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.141 0.859 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.115 0.885 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.079 7.329 3.628 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.143 4.143 3 C 0.057 3.943 4 H 0.052 0.948 5 C -0.564 4.564 6 H 0.061 0.939 7 C -0.164 4.164 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.184 1.184 11 H -0.223 1.223 12 H -0.179 1.179 13 N -0.203 5.203 14 C -0.097 4.097 15 C -0.149 4.149 16 C -0.144 4.144 17 C -0.013 4.013 18 H 0.052 0.948 19 C -0.030 4.030 20 C -0.151 4.151 21 C -0.100 4.100 22 C -0.231 4.231 23 C 0.062 3.938 24 O -0.262 6.262 25 C -0.075 4.075 26 C -0.195 4.195 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.159 0.841 40 H 0.176 0.824 41 H 0.172 0.828 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.134 0.866 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.336 7.403 3.524 18.278 hybrid contribution 1.631 0.360 -1.373 2.162 sum -14.705 7.763 2.151 16.767 Atomic orbital electron populations 1.21632 0.94651 1.00914 1.01707 1.21501 0.96236 0.96417 1.00115 1.19796 0.91466 0.92952 0.90078 0.94779 1.21705 0.92817 1.32510 1.09396 0.93925 1.25666 0.95252 0.95541 0.99965 1.70054 1.10681 1.44336 1.32817 0.86300 0.79642 0.80652 0.79812 1.18410 1.22278 1.17919 1.65772 1.51139 1.00158 1.03209 1.23021 0.97546 0.98018 0.91100 1.22244 1.02334 0.93301 0.97040 1.22251 1.02050 0.97915 0.92157 1.21372 0.94716 0.89673 0.95578 0.94812 1.19605 0.95371 0.93071 0.94951 1.21129 0.91552 1.00663 1.01781 1.21332 1.00914 0.93169 0.94569 1.21462 0.93196 1.02697 1.05793 1.19071 0.93272 0.88667 0.92784 1.86038 1.38270 1.40826 1.61110 1.23340 0.92662 0.95011 0.96501 1.20312 0.98485 0.98483 1.02192 0.92411 0.91327 0.94433 0.94389 0.92905 0.92899 0.95418 0.89989 0.91618 0.89224 0.89961 0.92269 0.84103 0.82410 0.82767 0.91963 0.90937 0.86626 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 9.80 71.98 0.71 -3.52 16 2 C -0.10 -4.19 5.34 30.59 0.16 -4.03 16 3 C 0.16 7.55 1.71 44.17 0.08 7.63 16 4 H 0.03 1.68 4.43 -2.39 -0.01 1.67 16 5 C -0.53 -29.12 6.61 25.60 0.17 -28.95 16 6 H 0.04 2.62 6.54 -2.91 -0.02 2.60 16 7 C 0.03 2.05 5.22 84.65 0.44 2.49 16 8 N -0.94 -58.97 13.96 21.45 0.30 -58.67 16 9 Si 0.91 46.52 27.15 68.60 1.86 48.38 16 10 H -0.26 -13.21 6.17 99.48 0.61 -12.59 16 11 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 12 H -0.25 -12.45 6.55 99.48 0.65 -11.79 16 13 N -0.48 -18.91 3.67 -839.90 -3.08 -21.99 16 14 C 0.03 1.15 5.43 86.42 0.47 1.62 16 15 C -0.11 -3.34 6.99 31.49 0.22 -3.12 16 16 C -0.11 -3.47 6.54 31.49 0.21 -3.26 16 17 C 0.10 3.88 2.32 44.31 0.10 3.99 16 18 H 0.03 1.73 6.49 -2.38 -0.02 1.71 16 19 C -0.03 -1.12 4.59 -19.88 -0.09 -1.21 16 20 C -0.13 -4.21 9.29 22.28 0.21 -4.01 16 21 C -0.08 -2.15 10.04 22.26 0.22 -1.93 16 22 C -0.21 -5.80 9.04 22.37 0.20 -5.60 16 23 C 0.11 3.70 6.69 22.51 0.15 3.85 16 24 O -0.35 -11.32 10.50 -92.42 -0.97 -12.29 16 25 C 0.02 0.37 9.81 113.37 1.11 1.49 16 26 C -0.18 -7.08 8.71 22.37 0.19 -6.88 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 2.08 7.74 -2.39 -0.02 2.06 16 29 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 2.06 6.92 -2.38 -0.02 2.05 16 32 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 33 H 0.03 1.24 5.64 -2.39 -0.01 1.23 16 34 H 0.08 2.71 7.61 -2.38 -0.02 2.69 16 35 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.08 2.38 7.81 -2.38 -0.02 2.36 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.14 4.19 7.63 -2.91 -0.02 4.17 16 40 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 41 H 0.15 3.04 6.30 -2.91 -0.02 3.02 16 42 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 43 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 44 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.09 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -68.56 347.07 3.47 -65.09 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.81 Total: 20.94 kcal Atomic # 6 Polarization: -46.00 SS G_CDS: 4.55 Total: -41.45 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -2.78 Total: -80.66 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.97 Total: -12.29 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.86 Total: 48.38 kcal Total: -68.56 3.47 -65.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.583 kcal (2) G-P(sol) polarization free energy of solvation -68.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds