Wall clock time and date at job start Tue Mar 31 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47441 * 2 1 4 4 H 1.08998 * 109.47125 * 55.00375 * 3 2 1 5 5 C 1.50700 * 109.47207 * 175.00273 * 3 2 1 6 6 H 1.07994 * 119.99998 * 120.00053 * 5 3 2 7 7 C 1.37872 * 119.99956 * 299.99878 * 5 3 2 8 8 N 1.31513 * 120.00414 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00024 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47375 * 90.00143 * 9 7 5 11 11 H 1.48504 * 109.47107 * 210.00112 * 9 7 5 12 12 H 1.48496 * 109.47299 * 329.99808 * 9 7 5 13 13 N 1.46903 * 109.47141 * 295.00087 * 3 2 1 14 14 C 1.48673 * 111.10952 * 290.41632 * 13 3 2 15 15 C 1.54371 * 104.67199 * 201.09720 * 14 13 3 16 16 C 1.54260 * 105.06220 * 23.77109 * 15 14 13 17 17 C 1.48560 * 111.00105 * 174.99930 * 13 3 2 18 18 H 1.08998 * 110.41016 * 40.14346 * 17 13 3 19 19 C 1.50701 * 110.41025 * 277.82020 * 17 13 3 20 20 C 1.38290 * 119.97285 * 321.64951 * 19 17 13 21 21 C 1.38245 * 120.10982 * 179.97438 * 20 19 17 22 22 C 1.38165 * 120.05645 * 359.97438 * 21 20 19 23 23 C 1.38714 * 119.94333 * 0.02562 * 22 21 20 24 24 O 1.35901 * 120.05102 * 180.02562 * 23 22 21 25 25 C 1.42894 * 117.00403 * 359.97438 * 24 23 22 26 26 C 1.38126 * 119.96946 * 141.62681 * 19 17 13 27 27 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46708 * 300.00103 * 1 2 3 29 29 H 1.08994 * 109.47054 * 59.99941 * 1 2 3 30 30 H 1.09002 * 109.46708 * 239.99897 * 2 1 3 31 31 H 1.09005 * 109.47288 * 120.00526 * 2 1 3 32 32 H 0.96996 * 120.00518 * 180.02562 * 8 7 5 33 33 H 1.09004 * 110.43829 * 82.25549 * 14 13 3 34 34 H 1.08996 * 110.40298 * 319.91779 * 14 13 3 35 35 H 1.09004 * 110.32584 * 264.87431 * 15 14 13 36 36 H 1.09003 * 110.41100 * 142.71672 * 15 14 13 37 37 H 1.09000 * 110.32812 * 241.10147 * 16 15 14 38 38 H 1.09001 * 110.40846 * 118.94399 * 16 15 14 39 39 H 1.07995 * 119.94278 * 0.25186 * 20 19 17 40 40 H 1.07997 * 119.96957 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.02569 * 180.02562 * 22 21 20 42 42 H 1.09007 * 109.46669 * 60.00451 * 25 24 23 43 43 H 1.08998 * 109.47488 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.47642 * 300.00576 * 25 24 23 45 45 H 1.07998 * 120.03163 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1472 1.8887 -0.6523 7 6 4.1433 0.8782 1.2278 8 7 5.4540 0.8802 1.3362 9 14 3.0964 0.1087 2.5700 10 1 2.8756 -1.3274 2.2633 11 1 3.7938 0.2346 3.8750 12 1 1.7878 0.8072 2.6387 13 7 1.6514 2.0992 -1.2552 14 6 2.4041 1.5385 -2.4083 15 6 2.3201 2.6292 -3.4976 16 6 2.0708 3.9439 -2.7301 17 6 2.0251 3.5370 -1.2417 18 1 3.0036 3.6711 -0.7807 19 6 0.9847 4.3435 -0.5080 20 6 -0.3555 4.0323 -0.6473 21 6 -1.3123 4.7699 0.0248 22 6 -0.9314 5.8199 0.8380 23 6 0.4123 6.1341 0.9794 24 8 0.7894 7.1661 1.7791 25 6 -0.2509 7.8854 2.4440 26 6 1.3706 5.3926 0.3033 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.8771 0.4817 2.1127 33 1 1.9369 0.6171 -2.7560 34 1 3.4426 1.3565 -2.1318 35 1 1.4920 2.4238 -4.1759 36 1 3.2571 2.6860 -4.0516 37 1 1.1202 4.3839 -3.0317 38 1 2.8851 4.6468 -2.9057 39 1 -0.6549 3.2088 -1.2787 40 1 -2.3583 4.5251 -0.0860 41 1 -1.6792 6.3955 1.3632 42 1 -0.8090 7.2051 3.0875 43 1 0.1859 8.6803 3.0485 44 1 -0.9234 8.3190 1.7038 45 1 2.4174 5.6348 0.4124 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:21 Heat of formation + Delta-G solvation = -4.029207 kcal Electronic energy + Delta-G solvation = -24233.876690 eV Core-core repulsion = 21023.690583 eV Total energy + Delta-G solvation = -3210.186107 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98720 -38.75570 -36.81208 -34.38207 -31.95839 -31.36894 -30.10600 -29.79858 -27.38959 -26.86009 -26.58753 -22.93957 -22.20950 -22.06132 -21.05247 -19.69749 -19.11088 -17.49769 -16.61383 -16.01719 -15.63068 -15.60088 -15.30053 -15.01161 -14.25472 -13.91037 -13.48109 -13.34421 -12.85726 -12.78116 -12.67203 -12.55178 -12.30677 -12.05682 -11.79441 -11.55964 -11.49336 -11.04736 -11.03580 -10.84443 -10.73015 -10.71194 -10.35972 -10.33901 -10.05927 -9.97619 -9.62330 -9.51011 -9.21921 -8.55547 -8.41554 -7.84526 -7.29686 -6.11692 -4.11966 1.67226 1.83231 3.26607 3.38547 3.41421 3.42544 4.11556 4.38745 4.88000 4.99173 5.12177 5.13294 5.20094 5.21625 5.32083 5.37015 5.43542 5.57726 5.67104 5.80064 5.82270 5.95700 6.02000 6.05498 6.16576 6.17674 6.26022 6.34287 6.35345 6.42525 6.59205 6.60657 6.69129 6.72321 6.76837 6.81314 6.92079 6.94307 7.06503 7.12969 7.15688 7.27982 7.56538 7.65323 7.95275 8.09336 8.43323 8.89311 9.52157 11.00515 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.006390 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.983921 B = 4381.125020 C = 5101.254492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.172 3.828 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.081 0.919 7 C 0.077 3.923 8 N -0.897 5.897 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.491 5.491 14 C 0.030 3.970 15 C -0.123 4.123 16 C -0.112 4.112 17 C 0.097 3.903 18 H 0.080 0.920 19 C -0.013 4.013 20 C -0.125 4.125 21 C -0.092 4.092 22 C -0.219 4.219 23 C 0.117 3.883 24 O -0.320 6.320 25 C 0.030 3.970 26 C -0.144 4.144 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.131 0.869 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.051 0.949 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 8.780 -3.788 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.063 3.937 4 H 0.057 0.943 5 C -0.583 4.583 6 H 0.099 0.901 7 C -0.126 4.126 8 N -0.534 5.534 9 Si 0.715 3.285 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.215 5.215 14 C -0.098 4.098 15 C -0.161 4.161 16 C -0.150 4.150 17 C -0.011 4.011 18 H 0.098 0.902 19 C -0.013 4.013 20 C -0.143 4.143 21 C -0.111 4.111 22 C -0.238 4.238 23 C 0.073 3.927 24 O -0.234 6.234 25 C -0.065 4.065 26 C -0.163 4.163 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.149 0.851 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.070 0.930 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.507 8.709 -3.678 15.678 hybrid contribution 0.202 -0.425 1.217 1.305 sum -12.305 8.285 -2.461 15.037 Atomic orbital electron populations 1.21731 0.97465 0.99240 1.01588 1.21842 0.93953 0.99205 1.00508 1.19796 0.94632 0.90659 0.88577 0.94333 1.21583 0.90544 1.39099 1.07068 0.90141 1.24945 0.94662 0.95287 0.97745 1.69904 1.08795 1.44999 1.29731 0.86893 0.80884 0.79779 0.80969 1.20585 1.22656 1.18856 1.65552 1.51313 1.00289 1.04298 1.23100 0.99811 0.96455 0.90462 1.22288 1.00645 0.95267 0.97894 1.22283 1.01197 0.97338 0.94159 1.21501 0.96042 0.89662 0.93928 0.90218 1.19615 0.94585 0.92991 0.94139 1.20984 0.92072 1.00052 1.01204 1.20888 0.99221 0.94759 0.96196 1.21078 0.94361 1.02629 1.05704 1.18923 0.92872 0.88733 0.92192 1.86063 1.35224 1.43218 1.58910 1.22965 0.91298 0.95851 0.96382 1.20350 0.98999 0.97254 0.99737 0.94902 0.94043 0.91959 0.92438 0.93674 0.92673 0.91586 0.90893 0.92168 0.92202 0.91762 0.91977 0.85065 0.86462 0.86333 0.92943 0.88676 0.93017 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.80 37.16 0.36 -2.25 16 2 C -0.12 -2.53 4.90 -26.74 -0.13 -2.66 16 3 C 0.17 3.93 1.29 -68.87 -0.09 3.84 16 4 H 0.04 0.97 6.93 -51.93 -0.36 0.61 16 5 C -0.54 -14.51 7.14 -34.44 -0.25 -14.76 16 6 H 0.08 2.30 5.90 -52.49 -0.31 1.99 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 8 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 9 Si 0.88 22.14 24.41 -169.99 -4.15 17.99 16 10 H -0.28 -6.81 6.83 56.52 0.39 -6.43 16 11 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 12 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 13 N -0.49 -9.56 3.74 -216.88 -0.81 -10.37 16 14 C 0.03 0.55 5.48 -2.12 -0.01 0.54 16 15 C -0.12 -1.87 7.00 -25.35 -0.18 -2.04 16 16 C -0.11 -1.74 6.53 -25.35 -0.17 -1.90 16 17 C 0.10 1.81 2.28 -67.23 -0.15 1.66 16 18 H 0.08 1.73 6.53 -51.93 -0.34 1.39 16 19 C -0.01 -0.22 4.56 -104.64 -0.48 -0.70 16 20 C -0.12 -2.02 9.22 -39.56 -0.36 -2.38 16 21 C -0.09 -1.32 10.04 -39.61 -0.40 -1.72 16 22 C -0.22 -3.12 9.04 -39.43 -0.36 -3.48 16 23 C 0.12 1.90 6.69 -39.22 -0.26 1.64 16 24 O -0.32 -4.83 10.50 -19.43 -0.20 -5.03 16 25 C 0.03 0.31 9.81 101.05 0.99 1.30 16 26 C -0.14 -2.56 9.62 -39.43 -0.38 -2.93 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.08 7.75 -51.93 -0.40 0.67 16 30 H 0.06 1.21 7.05 -51.93 -0.37 0.85 16 31 H 0.05 1.05 3.21 -51.93 -0.17 0.88 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.07 1.16 7.65 -51.93 -0.40 0.76 16 34 H 0.07 1.57 5.54 -51.93 -0.29 1.28 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.93 7.76 -51.93 -0.40 0.53 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.13 2.09 7.69 -52.49 -0.40 1.69 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.12 1.37 6.30 -52.49 -0.33 1.04 16 42 H 0.05 0.49 7.66 -51.92 -0.40 0.10 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 45 H 0.13 2.27 8.05 -52.49 -0.42 1.85 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -29.68 342.83 -8.30 -37.99 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.13 Total: 4.22 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -1.95 Total: -23.80 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.04 Total: -36.53 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.20 Total: -5.03 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.15 Total: 17.99 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.68 -8.30 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.957 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds