Wall clock time and date at job start Tue Mar 31 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47441 * 2 1 4 4 H 1.08998 * 109.47125 * 55.00375 * 3 2 1 5 5 C 1.50700 * 109.47207 * 175.00273 * 3 2 1 6 6 H 1.07994 * 119.99998 * 120.00053 * 5 3 2 7 7 C 1.37872 * 119.99956 * 299.99878 * 5 3 2 8 8 N 1.31513 * 120.00414 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00024 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47375 * 90.00143 * 9 7 5 11 11 H 1.48504 * 109.47107 * 210.00112 * 9 7 5 12 12 H 1.48496 * 109.47299 * 329.99808 * 9 7 5 13 13 N 1.46903 * 109.47141 * 295.00087 * 3 2 1 14 14 C 1.48673 * 111.10952 * 290.41632 * 13 3 2 15 15 C 1.54371 * 104.67199 * 201.09720 * 14 13 3 16 16 C 1.54260 * 105.06220 * 23.77109 * 15 14 13 17 17 C 1.48560 * 111.00105 * 174.99930 * 13 3 2 18 18 H 1.08998 * 110.41016 * 40.14346 * 17 13 3 19 19 C 1.50701 * 110.41025 * 277.82020 * 17 13 3 20 20 C 1.38290 * 119.97285 * 321.64951 * 19 17 13 21 21 C 1.38245 * 120.10982 * 179.97438 * 20 19 17 22 22 C 1.38165 * 120.05645 * 359.97438 * 21 20 19 23 23 C 1.38714 * 119.94333 * 0.02562 * 22 21 20 24 24 O 1.35901 * 120.05102 * 180.02562 * 23 22 21 25 25 C 1.42894 * 117.00403 * 359.97438 * 24 23 22 26 26 C 1.38126 * 119.96946 * 141.62681 * 19 17 13 27 27 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46708 * 300.00103 * 1 2 3 29 29 H 1.08994 * 109.47054 * 59.99941 * 1 2 3 30 30 H 1.09002 * 109.46708 * 239.99897 * 2 1 3 31 31 H 1.09005 * 109.47288 * 120.00526 * 2 1 3 32 32 H 0.96996 * 120.00518 * 180.02562 * 8 7 5 33 33 H 1.09004 * 110.43829 * 82.25549 * 14 13 3 34 34 H 1.08996 * 110.40298 * 319.91779 * 14 13 3 35 35 H 1.09004 * 110.32584 * 264.87431 * 15 14 13 36 36 H 1.09003 * 110.41100 * 142.71672 * 15 14 13 37 37 H 1.09000 * 110.32812 * 241.10147 * 16 15 14 38 38 H 1.09001 * 110.40846 * 118.94399 * 16 15 14 39 39 H 1.07995 * 119.94278 * 0.25186 * 20 19 17 40 40 H 1.07997 * 119.96957 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.02569 * 180.02562 * 22 21 20 42 42 H 1.09007 * 109.46669 * 60.00451 * 25 24 23 43 43 H 1.08998 * 109.47488 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.47642 * 300.00576 * 25 24 23 45 45 H 1.07998 * 120.03163 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1472 1.8887 -0.6523 7 6 4.1433 0.8782 1.2278 8 7 5.4540 0.8802 1.3362 9 14 3.0964 0.1087 2.5700 10 1 2.8756 -1.3274 2.2633 11 1 3.7938 0.2346 3.8750 12 1 1.7878 0.8072 2.6387 13 7 1.6514 2.0992 -1.2552 14 6 2.4041 1.5385 -2.4083 15 6 2.3201 2.6292 -3.4976 16 6 2.0708 3.9439 -2.7301 17 6 2.0251 3.5370 -1.2417 18 1 3.0036 3.6711 -0.7807 19 6 0.9847 4.3435 -0.5080 20 6 -0.3555 4.0323 -0.6473 21 6 -1.3123 4.7699 0.0248 22 6 -0.9314 5.8199 0.8380 23 6 0.4123 6.1341 0.9794 24 8 0.7894 7.1661 1.7791 25 6 -0.2509 7.8854 2.4440 26 6 1.3706 5.3926 0.3033 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.8771 0.4817 2.1127 33 1 1.9369 0.6171 -2.7560 34 1 3.4426 1.3565 -2.1318 35 1 1.4920 2.4238 -4.1759 36 1 3.2571 2.6860 -4.0516 37 1 1.1202 4.3839 -3.0317 38 1 2.8851 4.6468 -2.9057 39 1 -0.6549 3.2088 -1.2787 40 1 -2.3583 4.5251 -0.0860 41 1 -1.6792 6.3955 1.3632 42 1 -0.8090 7.2051 3.0875 43 1 0.1859 8.6803 3.0485 44 1 -0.9234 8.3190 1.7038 45 1 2.4174 5.6348 0.4124 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:21 Heat of formation + Delta-G solvation = -21.982155 kcal Electronic energy + Delta-G solvation = -24234.655188 eV Core-core repulsion = 21023.690583 eV Total energy + Delta-G solvation = -3210.964605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.22515 -40.16054 -38.06536 -36.05823 -34.03324 -32.62846 -31.39972 -31.19778 -28.63105 -28.42999 -27.91632 -24.71114 -23.47394 -23.41875 -22.49617 -21.08608 -20.80792 -18.92883 -18.38100 -17.34848 -16.98749 -16.80327 -16.59612 -16.40029 -15.94368 -15.44537 -14.91391 -14.62275 -14.55379 -14.27430 -14.11019 -13.97908 -13.65220 -13.54278 -13.30765 -12.85849 -12.78368 -12.68482 -12.51403 -12.33161 -12.16364 -11.96764 -11.85650 -11.77945 -11.60106 -11.51615 -11.37733 -11.19185 -11.12324 -10.68756 -9.67470 -9.05406 -9.01854 -8.32602 -6.34542 0.44949 0.61266 1.24316 1.31211 1.40517 2.28019 2.41123 2.88562 3.03241 3.38367 3.84010 3.95368 3.98060 4.12269 4.26886 4.34037 4.38689 4.39605 4.41324 4.46678 4.55132 4.60297 4.65803 4.67124 4.73302 4.82399 4.85988 4.96938 5.07006 5.09816 5.12699 5.14905 5.17601 5.25931 5.31684 5.41219 5.44222 5.50501 5.54251 5.60483 5.62444 5.83968 5.95128 6.16051 6.31381 6.38397 6.54703 6.74239 7.32481 8.83200 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.006390 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.983921 B = 4381.125020 C = 5101.254492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.118 4.118 3 C 0.181 3.819 4 H 0.018 0.982 5 C -0.532 4.532 6 H 0.046 0.954 7 C 0.019 3.981 8 N -0.946 5.946 9 Si 0.940 3.060 10 H -0.264 1.264 11 H -0.303 1.303 12 H -0.254 1.254 13 N -0.475 5.475 14 C 0.027 3.973 15 C -0.112 4.112 16 C -0.105 4.105 17 C 0.096 3.904 18 H 0.031 0.969 19 C -0.028 4.028 20 C -0.133 4.133 21 C -0.083 4.083 22 C -0.213 4.213 23 C 0.112 3.888 24 O -0.345 6.345 25 C 0.020 3.980 26 C -0.176 4.176 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.137 0.863 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.062 0.938 43 H 0.115 0.885 44 H 0.070 0.930 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.464 9.036 -4.251 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.072 3.928 4 H 0.036 0.964 5 C -0.571 4.571 6 H 0.064 0.936 7 C -0.179 4.179 8 N -0.586 5.586 9 Si 0.768 3.232 10 H -0.191 1.191 11 H -0.232 1.232 12 H -0.178 1.178 13 N -0.198 5.198 14 C -0.101 4.101 15 C -0.150 4.150 16 C -0.143 4.143 17 C -0.013 4.013 18 H 0.050 0.950 19 C -0.028 4.028 20 C -0.151 4.151 21 C -0.100 4.100 22 C -0.231 4.231 23 C 0.067 3.933 24 O -0.259 6.259 25 C -0.075 4.075 26 C -0.196 4.196 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.155 0.845 40 H 0.172 0.828 41 H 0.170 0.830 42 H 0.080 0.920 43 H 0.134 0.866 44 H 0.088 0.912 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.721 8.975 -4.156 19.427 hybrid contribution 1.535 -0.360 1.338 2.068 sum -15.185 8.614 -2.818 17.685 Atomic orbital electron populations 1.21637 0.94237 1.01060 1.02079 1.21774 0.96801 0.97268 0.99765 1.19577 0.91527 0.92034 0.89697 0.96384 1.21887 0.92774 1.36864 1.05556 0.93617 1.25720 0.95591 0.96412 1.00209 1.70046 1.10609 1.47222 1.30732 0.85976 0.79532 0.79718 0.77931 1.19058 1.23170 1.17813 1.65567 1.50556 1.00616 1.03031 1.23114 0.97332 0.98423 0.91237 1.22261 1.02356 0.93363 0.97060 1.22271 1.02415 0.97790 0.91841 1.21442 0.94319 0.89495 0.96022 0.95040 1.19535 0.95231 0.93228 0.94845 1.21071 0.91409 1.00691 1.01941 1.21292 1.00584 0.93607 0.94557 1.21448 0.93933 1.02562 1.05184 1.19030 0.93448 0.88835 0.92021 1.86037 1.37746 1.43171 1.58959 1.23325 0.91001 0.96179 0.96954 1.20348 0.98636 0.98887 1.01695 0.92426 0.94264 0.90727 0.92355 0.95259 0.92796 0.90171 0.94980 0.89242 0.91362 0.89785 0.91664 0.84523 0.82789 0.82981 0.91971 0.86627 0.91163 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 9.80 71.98 0.71 -3.74 16 2 C -0.12 -4.97 4.90 30.59 0.15 -4.82 16 3 C 0.18 8.40 1.29 44.17 0.06 8.46 16 4 H 0.02 0.93 6.93 -2.39 -0.02 0.91 16 5 C -0.53 -29.90 7.14 25.60 0.18 -29.71 16 6 H 0.05 2.84 5.90 -2.91 -0.02 2.82 16 7 C 0.02 1.09 5.45 84.65 0.46 1.55 16 8 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 9 Si 0.94 46.66 24.41 68.60 1.67 48.33 16 10 H -0.26 -12.42 6.83 99.48 0.68 -11.74 16 11 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 12 H -0.25 -12.06 6.53 99.48 0.65 -11.41 16 13 N -0.48 -18.53 3.74 -840.09 -3.14 -21.67 16 14 C 0.03 1.00 5.48 86.43 0.47 1.47 16 15 C -0.11 -3.26 7.00 31.49 0.22 -3.04 16 16 C -0.11 -3.22 6.53 31.49 0.21 -3.01 16 17 C 0.10 3.70 2.28 44.31 0.10 3.80 16 18 H 0.03 1.50 6.53 -2.39 -0.02 1.48 16 19 C -0.03 -0.99 4.56 -19.88 -0.09 -1.08 16 20 C -0.13 -4.01 9.22 22.28 0.21 -3.80 16 21 C -0.08 -2.06 10.04 22.25 0.22 -1.83 16 22 C -0.21 -5.40 9.04 22.37 0.20 -5.20 16 23 C 0.11 3.53 6.69 22.51 0.15 3.68 16 24 O -0.34 -10.16 10.50 -92.44 -0.97 -11.13 16 25 C 0.02 0.35 9.81 113.37 1.11 1.46 16 26 C -0.18 -6.50 9.62 22.37 0.22 -6.28 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 2.31 7.75 -2.39 -0.02 2.29 16 30 H 0.06 2.41 7.05 -2.39 -0.02 2.39 16 31 H 0.03 1.32 3.21 -2.38 -0.01 1.32 16 32 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 33 H 0.08 2.71 7.65 -2.38 -0.02 2.70 16 34 H 0.03 1.45 5.54 -2.39 -0.01 1.44 16 35 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 2.26 7.76 -2.39 -0.02 2.25 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 39 H 0.14 3.93 7.69 -2.91 -0.02 3.91 16 40 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 41 H 0.15 2.78 6.30 -2.91 -0.02 2.77 16 42 H 0.06 0.98 7.66 -2.38 -0.02 0.96 16 43 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.07 0.98 7.66 -2.39 -0.02 0.97 16 45 H 0.10 4.15 8.05 -2.91 -0.02 4.13 16 Total: -1.00 -68.65 342.83 3.32 -65.33 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.88 Total: 20.71 kcal Atomic # 6 Polarization: -46.67 SS G_CDS: 4.58 Total: -42.10 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -2.84 Total: -81.15 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.97 Total: -11.13 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.67 Total: 48.33 kcal Total: -68.65 3.32 -65.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.348 kcal (2) G-P(sol) polarization free energy of solvation -68.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds