Wall clock time and date at job start Tue Mar 31 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46809 * 2 1 4 4 H 1.09000 * 109.46968 * 304.99882 * 3 2 1 5 5 C 1.50705 * 109.46767 * 184.99973 * 3 2 1 6 6 H 1.07997 * 119.99858 * 245.22962 * 5 3 2 7 7 C 1.37878 * 119.99973 * 65.23765 * 5 3 2 8 8 N 1.31510 * 120.00055 * 355.53342 * 7 5 3 9 9 Si 1.86801 * 119.99772 * 175.53301 * 7 5 3 10 10 H 1.48501 * 109.47113 * 4.98283 * 9 7 5 11 11 H 1.48498 * 109.46998 * 124.97795 * 9 7 5 12 12 H 1.48495 * 109.47304 * 244.97959 * 9 7 5 13 13 N 1.46894 * 109.47352 * 65.00149 * 3 2 1 14 14 C 1.47845 * 111.00361 * 69.07273 * 13 3 2 15 15 C 1.54901 * 104.80041 * 146.36636 * 14 13 3 16 16 C 1.55403 * 101.73857 * 323.02016 * 15 14 13 17 17 C 1.47443 * 111.00267 * 189.91556 * 13 3 2 18 18 H 1.08999 * 109.88909 * 117.16828 * 17 13 3 19 19 C 1.50701 * 109.88694 * 356.14947 * 17 13 3 20 20 C 1.38288 * 119.96673 * 251.46053 * 19 17 13 21 21 C 1.38247 * 120.10655 * 180.02562 * 20 19 17 22 22 C 1.38163 * 120.05876 * 359.68603 * 21 20 19 23 23 C 1.38716 * 119.94337 * 0.60962 * 22 21 20 24 24 O 1.35894 * 120.05540 * 179.68375 * 23 22 21 25 25 C 1.42894 * 117.00423 * 359.72557 * 24 23 22 26 26 C 1.38123 * 119.97643 * 71.48126 * 19 17 13 27 27 H 1.09007 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47644 * 299.99847 * 1 2 3 29 29 H 1.09005 * 109.47144 * 60.00046 * 1 2 3 30 30 H 1.09000 * 109.47644 * 240.00153 * 2 1 3 31 31 H 1.08996 * 109.47388 * 119.99868 * 2 1 3 32 32 H 0.97003 * 119.99719 * 179.97438 * 8 7 5 33 33 H 1.09008 * 110.37313 * 265.19655 * 14 13 3 34 34 H 1.08998 * 110.37168 * 27.41965 * 14 13 3 35 35 H 1.08998 * 110.98987 * 81.01708 * 15 14 13 36 36 H 1.08998 * 110.99266 * 204.84006 * 15 14 13 37 37 H 1.09000 * 110.67798 * 277.17350 * 16 15 14 38 38 H 1.09003 * 110.84468 * 153.86149 * 16 15 14 39 39 H 1.08001 * 119.94884 * 0.02562 * 20 19 17 40 40 H 1.08001 * 119.96865 * 179.97438 * 21 20 19 41 41 H 1.08002 * 120.03098 * 180.29597 * 22 21 20 42 42 H 1.09001 * 109.46772 * 60.00368 * 25 24 23 43 43 H 1.09004 * 109.47212 * 300.00062 * 25 24 23 44 44 H 1.08999 * 109.47473 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.02267 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1503 1.8120 0.6892 7 6 4.1392 0.9768 -1.2751 8 7 3.4044 0.4483 -2.2292 9 14 5.9923 1.0939 -1.4797 10 1 6.5969 1.6120 -0.2262 11 1 6.5438 -0.2528 -1.7754 12 1 6.3093 2.0156 -2.6001 13 7 1.6513 2.0993 1.2552 14 6 2.3924 1.5318 2.4017 15 6 2.5969 2.7237 3.3697 16 6 2.8430 3.8962 2.3800 17 6 1.9151 3.5488 1.1969 18 1 0.9790 4.1000 1.2855 19 6 2.5921 3.8947 -0.1043 20 6 3.9273 4.2547 -0.1140 21 6 4.5510 4.5731 -1.3060 22 6 3.8432 4.5261 -2.4916 23 6 2.5022 4.1713 -2.4838 24 8 1.8022 4.1305 -3.6479 25 6 2.5088 4.4711 -4.8422 26 6 1.8784 3.8524 -1.2862 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8247 0.1196 -3.0394 33 1 1.8059 0.7488 2.8825 34 1 3.3542 1.1373 2.0741 35 1 1.7019 2.9003 3.9662 36 1 3.4650 2.5629 4.0091 37 1 3.8846 3.9173 2.0596 38 1 2.5569 4.8481 2.8275 39 1 4.4837 4.2872 0.8111 40 1 5.5937 4.8543 -1.3109 41 1 4.3322 4.7703 -3.4231 42 1 3.3440 3.7841 -4.9786 43 1 2.8862 5.4907 -4.7629 44 1 1.8355 4.3979 -5.6962 45 1 0.8357 3.5711 -1.2780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:24 Heat of formation + Delta-G solvation = 15.214884 kcal Electronic energy + Delta-G solvation = -25472.590438 eV Core-core repulsion = 22263.238817 eV Total energy + Delta-G solvation = -3209.351621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99860 -38.51542 -36.08663 -34.08593 -31.59859 -31.12263 -29.77627 -29.29627 -27.03537 -26.55693 -25.97824 -23.02060 -22.14958 -21.70839 -20.60758 -19.63628 -18.60674 -16.86680 -16.30144 -15.66636 -15.31100 -15.18301 -15.06319 -14.74302 -14.19278 -13.61473 -13.15996 -12.89545 -12.80879 -12.62659 -12.46703 -12.25033 -11.70194 -11.61392 -11.41593 -11.10304 -11.03940 -10.90283 -10.68520 -10.63685 -10.46962 -10.37716 -10.15387 -10.08411 -9.86944 -9.77597 -9.49821 -9.40567 -8.88034 -8.27783 -7.63339 -7.26240 -7.06114 -5.90233 -3.92216 2.25575 2.43329 3.29581 3.37373 3.39199 3.93934 4.47917 4.63955 5.13196 5.28238 5.37691 5.42530 5.47101 5.55099 5.63727 5.67003 5.72701 5.80132 5.87556 6.05445 6.13497 6.20507 6.31322 6.37471 6.41123 6.46382 6.53053 6.53384 6.70736 6.74822 6.81815 6.91530 6.99290 7.15598 7.16898 7.24678 7.29346 7.39713 7.52873 7.63409 7.71840 7.82639 8.04953 8.21842 8.24181 8.34708 8.54507 9.09466 9.67372 11.10721 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.008739 C = 0.008158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.072738 B = 3203.213545 C = 3431.278812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.189 3.811 4 H 0.067 0.933 5 C -0.516 4.516 6 H 0.057 0.943 7 C 0.082 3.918 8 N -0.874 5.874 9 Si 0.867 3.133 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.282 1.282 13 N -0.518 5.518 14 C 0.041 3.959 15 C -0.130 4.130 16 C -0.144 4.144 17 C 0.117 3.883 18 H 0.075 0.925 19 C -0.006 4.006 20 C -0.127 4.127 21 C -0.096 4.096 22 C -0.212 4.212 23 C 0.131 3.869 24 O -0.320 6.320 25 C 0.035 3.965 26 C -0.120 4.120 27 H 0.023 0.977 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.027 0.973 32 H 0.256 0.744 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 7.455 2.330 7.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.083 3.917 4 H 0.085 0.915 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.121 4.121 8 N -0.512 5.512 9 Si 0.695 3.305 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.209 1.209 13 N -0.242 5.242 14 C -0.087 4.087 15 C -0.168 4.168 16 C -0.182 4.182 17 C 0.009 3.991 18 H 0.093 0.907 19 C -0.007 4.007 20 C -0.146 4.146 21 C -0.114 4.114 22 C -0.231 4.231 23 C 0.087 3.913 24 O -0.234 6.234 25 C -0.061 4.061 26 C -0.140 4.140 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.775 7.205 2.179 7.733 hybrid contribution 2.464 -0.071 -0.675 2.556 sum 0.689 7.133 1.503 7.322 Atomic orbital electron populations 1.21716 0.99056 0.98290 1.00515 1.21544 0.92107 0.99523 1.01282 1.19972 0.93506 0.91127 0.87089 0.91548 1.21611 0.92307 1.40634 1.00921 0.92489 1.24681 0.96435 0.94997 0.96020 1.69900 1.34408 1.39768 1.07153 0.86923 0.87878 0.77297 0.78353 1.19935 1.21746 1.20853 1.64148 1.53884 1.00326 1.05818 1.23039 0.98837 0.95827 0.90967 1.22721 1.00393 0.96186 0.97476 1.23133 1.01139 0.97904 0.95984 1.21205 0.95824 0.91645 0.90428 0.90708 1.19471 0.93473 0.93623 0.94159 1.20746 0.94436 1.02198 0.97200 1.20510 0.98100 1.00305 0.92484 1.20798 0.93913 1.10038 0.98396 1.18691 0.90381 0.96880 0.85377 1.86008 1.38841 1.84844 1.13734 1.22852 0.97944 0.99312 0.85963 1.19807 1.00229 1.04344 0.89599 0.95802 0.93373 0.94303 0.89622 0.95369 0.93385 0.92332 0.91183 0.91982 0.92164 0.90154 0.92047 0.86714 0.87877 0.87460 0.93106 0.93611 0.89230 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.80 37.16 0.36 -2.49 16 2 C -0.11 -2.49 5.27 -26.73 -0.14 -2.63 16 3 C 0.19 4.39 1.22 -68.86 -0.08 4.31 16 4 H 0.07 1.70 4.27 -51.93 -0.22 1.48 16 5 C -0.52 -12.77 4.09 -34.44 -0.14 -12.91 16 6 H 0.06 1.44 5.64 -52.49 -0.30 1.15 16 7 C 0.08 2.13 5.35 -17.82 -0.10 2.04 16 8 N -0.87 -23.96 11.52 55.43 0.64 -23.32 16 9 Si 0.87 21.06 29.36 -169.99 -4.99 16.07 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.52 -10.53 4.58 -218.19 -1.00 -11.53 16 14 C 0.04 0.78 5.33 -2.30 -0.01 0.77 16 15 C -0.13 -2.02 7.08 -24.45 -0.17 -2.19 16 16 C -0.14 -2.30 6.21 -24.77 -0.15 -2.45 16 17 C 0.12 2.17 3.54 -67.88 -0.24 1.93 16 18 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 19 C -0.01 -0.12 3.05 -104.64 -0.32 -0.44 16 20 C -0.13 -2.49 7.13 -39.56 -0.28 -2.77 16 21 C -0.10 -1.86 9.86 -39.61 -0.39 -2.25 16 22 C -0.21 -4.21 9.04 -39.43 -0.36 -4.57 16 23 C 0.13 2.74 6.69 -39.22 -0.26 2.48 16 24 O -0.32 -6.35 10.50 -19.41 -0.20 -6.56 16 25 C 0.03 0.53 9.81 101.05 0.99 1.52 16 26 C -0.12 -2.55 6.95 -39.43 -0.27 -2.83 16 27 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.05 0.95 7.75 -51.93 -0.40 0.55 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 2.26 6.23 -51.93 -0.32 1.93 16 31 H 0.03 0.65 7.34 -51.93 -0.38 0.27 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.06 1.08 8.12 -51.92 -0.42 0.66 16 34 H 0.07 1.49 5.49 -51.93 -0.28 1.21 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.34 4.90 -51.93 -0.25 1.09 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.12 2.09 5.26 -52.49 -0.28 1.81 16 40 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.11 1.91 6.30 -52.49 -0.33 1.58 16 42 H 0.05 0.80 7.65 -51.93 -0.40 0.40 16 43 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.12 2.52 7.51 -52.49 -0.39 2.12 16 LS Contribution 335.18 15.07 5.05 5.05 Total: -1.00 -27.57 335.18 -8.97 -36.55 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.90 Total: 6.23 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.57 Total: -22.49 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: -0.36 Total: -34.85 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.20 Total: -6.56 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.99 Total: 16.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.57 -8.97 -36.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.762 kcal (2) G-P(sol) polarization free energy of solvation -27.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds