Wall clock time and date at job start Tue Mar 31 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47282 * 2 1 4 4 H 1.09001 * 109.47059 * 305.00585 * 3 2 1 5 5 C 1.50695 * 109.47046 * 184.99619 * 3 2 1 6 6 H 1.07999 * 120.00446 * 240.00339 * 5 3 2 7 7 C 1.37877 * 119.99684 * 60.00657 * 5 3 2 8 8 N 1.31521 * 120.00346 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00191 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47295 * 89.99764 * 9 7 5 11 11 H 1.48498 * 109.47637 * 210.00211 * 9 7 5 12 12 H 1.48508 * 109.46889 * 330.00060 * 9 7 5 13 13 N 1.46908 * 109.46719 * 64.99961 * 3 2 1 14 14 C 1.47024 * 110.99261 * 66.32173 * 13 3 2 15 15 C 1.53103 * 109.24985 * 182.34870 * 14 13 3 16 16 O 1.43012 * 109.29295 * 303.21723 * 15 14 13 17 17 C 1.43011 * 113.74271 * 58.65008 * 16 15 14 18 18 H 1.09000 * 109.50955 * 61.30626 * 17 16 15 19 19 C 1.52993 * 109.50936 * 181.39595 * 17 16 15 20 20 C 1.50701 * 109.47401 * 294.99797 * 19 17 16 21 21 C 1.38238 * 120.00256 * 269.73235 * 20 19 17 22 22 C 1.38224 * 120.00174 * 179.76230 * 21 20 19 23 23 C 1.38239 * 120.00261 * 0.50271 * 22 21 20 24 24 C 1.38236 * 119.99716 * 359.74900 * 23 22 21 25 25 C 1.38235 * 120.00023 * 89.99456 * 20 19 17 26 26 C 1.47018 * 110.99661 * 189.99712 * 13 3 2 27 27 H 1.08997 * 109.47017 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47027 * 299.99566 * 1 2 3 29 29 H 1.08998 * 109.47066 * 59.99691 * 1 2 3 30 30 H 1.09004 * 109.46925 * 240.00151 * 2 1 3 31 31 H 1.08998 * 109.47111 * 120.00864 * 2 1 3 32 32 H 0.96995 * 120.00391 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47369 * 62.43595 * 14 13 3 34 34 H 1.08998 * 109.54483 * 302.29802 * 14 13 3 35 35 H 1.09002 * 109.50635 * 183.25881 * 15 14 13 36 36 H 1.09003 * 109.50698 * 63.17493 * 15 14 13 37 37 H 1.09002 * 109.47549 * 54.99592 * 19 17 16 38 38 H 1.09000 * 109.47345 * 175.00047 * 19 17 16 39 39 H 1.08005 * 119.99781 * 359.97438 * 21 20 19 40 40 H 1.08001 * 120.00185 * 180.22427 * 22 21 20 41 41 H 1.07995 * 120.00473 * 179.72340 * 23 22 21 42 42 H 1.07996 * 120.00238 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.99893 * 0.02562 * 25 20 19 44 44 H 1.08994 * 109.50209 * 57.67478 * 26 13 3 45 45 H 1.08997 * 109.50514 * 297.54292 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1473 1.8887 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5548 -0.3504 -0.7602 11 1 6.3830 0.9223 -2.8172 12 1 6.5570 2.0736 -0.6900 13 7 1.6514 2.0992 1.2553 14 6 2.3397 1.4907 2.4032 15 6 1.8627 2.1642 3.6927 16 8 2.0961 3.5724 3.6046 17 6 1.4394 4.1968 2.4983 18 1 0.3611 4.0720 2.5974 19 6 1.7812 5.6879 2.4765 20 6 1.2120 6.3518 3.7038 21 6 -0.0629 6.8855 3.6726 22 6 -0.5868 7.4901 4.7998 23 6 0.1680 7.5704 5.9552 24 6 1.4448 7.0414 5.9848 25 6 1.9667 6.4320 4.8591 26 6 1.9128 3.5448 1.1965 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 3.8292 -0.0611 -2.9499 33 1 3.4156 1.6290 2.2967 34 1 2.1111 0.4257 2.4428 35 1 2.4125 1.7565 4.5411 36 1 0.7969 1.9796 3.8271 37 1 2.8640 5.8124 2.4653 38 1 1.3536 6.1457 1.5845 39 1 -0.6508 6.8269 2.7685 40 1 -1.5842 7.9038 4.7766 41 1 -0.2397 8.0467 6.8345 42 1 2.0346 7.1044 6.8873 43 1 2.9645 6.0192 4.8821 44 1 1.3727 3.9782 0.3548 45 1 2.9818 3.7165 1.0712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:44 Heat of formation + Delta-G solvation = -25.536854 kcal Electronic energy + Delta-G solvation = -23612.675083 eV Core-core repulsion = 20401.556335 eV Total energy + Delta-G solvation = -3211.118749 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.57214 -38.68670 -36.01893 -33.55048 -32.60419 -31.22955 -30.82234 -30.22880 -27.79727 -26.42676 -24.60434 -22.91401 -22.60196 -22.47412 -20.92487 -19.99075 -19.00706 -16.74341 -16.42302 -15.99063 -15.61014 -15.22298 -14.77906 -14.60407 -14.38280 -14.15714 -13.56594 -13.35894 -13.33963 -12.94755 -12.74071 -12.61219 -12.07199 -11.93914 -11.73059 -11.44734 -11.22146 -11.01205 -10.96886 -10.90134 -10.82845 -10.66232 -10.55818 -10.31358 -9.77580 -9.68880 -9.56607 -9.21353 -8.90284 -8.83056 -8.55834 -8.39452 -7.18906 -6.02183 -4.15481 1.41771 1.47224 3.24566 3.32149 3.35167 3.83318 4.17958 4.37113 4.76976 4.92177 4.98022 5.05267 5.17082 5.22280 5.44258 5.48150 5.55297 5.60734 5.66711 5.78039 5.83146 5.86747 5.99192 6.04862 6.14278 6.16504 6.24621 6.36038 6.43917 6.50821 6.54111 6.55842 6.65255 6.68712 6.75087 6.81277 7.06691 7.07566 7.14063 7.30577 7.55714 7.65989 7.72967 7.90471 8.10825 8.24481 8.41814 8.93869 9.52223 10.97244 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.003997 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.074770 B = 7004.009753 C = 7508.584216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.532 5.532 14 C 0.024 3.976 15 C 0.065 3.935 16 O -0.384 6.384 17 C 0.102 3.898 18 H 0.058 0.942 19 C -0.076 4.076 20 C -0.068 4.068 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.131 4.131 24 C -0.123 4.123 25 C -0.099 4.099 26 C 0.033 3.967 27 H 0.025 0.975 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.093 0.907 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.071 0.929 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 10.093 11.862 16.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.056 0.944 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.256 5.256 14 C -0.105 4.105 15 C -0.012 4.012 16 O -0.303 6.303 17 C 0.044 3.956 18 H 0.076 0.924 19 C -0.114 4.114 20 C -0.068 4.068 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.149 4.149 24 C -0.141 4.141 25 C -0.117 4.117 26 C -0.096 4.096 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.089 0.911 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.318 10.026 11.856 16.763 hybrid contribution 1.792 -0.217 -0.482 1.868 sum -4.526 9.809 11.375 15.687 Atomic orbital electron populations 1.21707 0.98851 0.98449 1.00524 1.21591 0.92237 0.99103 1.01938 1.19289 0.93185 0.91224 0.85502 0.94396 1.21729 0.92801 1.38224 1.05538 0.92477 1.24902 0.97838 0.94991 0.95625 1.69872 1.34809 1.38240 1.09425 0.86681 0.86178 0.78430 0.77243 1.20675 1.21174 1.20042 1.62699 1.56360 1.01375 1.05200 1.22596 0.98168 0.99182 0.90525 1.22670 0.99778 0.80956 0.97763 1.87884 1.73189 1.21096 1.48141 1.22088 0.96075 0.90655 0.86758 0.92392 1.20672 1.02021 0.93337 0.95382 1.19850 0.94211 0.97016 0.95686 1.21078 0.95319 0.98860 0.98579 1.21071 0.99623 1.00115 0.93365 1.21075 0.94915 1.00916 0.98008 1.21127 0.95847 0.98889 0.98282 1.21081 1.00221 0.97980 0.92458 1.22531 1.00248 0.90754 0.96060 0.95567 0.93455 0.94238 0.88911 0.94957 0.92870 0.93264 0.90469 0.89746 0.93510 0.90148 0.89543 0.86197 0.86463 0.86623 0.86463 0.85942 0.91053 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.80 37.16 0.36 -2.40 16 2 C -0.11 -2.56 5.17 -26.73 -0.14 -2.70 16 3 C 0.21 5.15 1.71 -68.86 -0.12 5.04 16 4 H 0.04 1.02 8.04 -51.93 -0.42 0.60 16 5 C -0.54 -14.29 7.16 -34.44 -0.25 -14.53 16 6 H 0.06 1.53 5.79 -52.49 -0.30 1.23 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -24.52 11.29 55.43 0.63 -23.89 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.53 -10.98 4.13 -227.71 -0.94 -11.93 16 14 C 0.02 0.46 5.01 -3.70 -0.02 0.45 16 15 C 0.07 1.07 7.01 37.21 0.26 1.33 16 16 O -0.38 -6.58 9.97 -35.23 -0.35 -6.93 16 17 C 0.10 1.65 2.79 -26.68 -0.07 1.57 16 18 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 19 C -0.08 -1.04 5.06 -27.89 -0.14 -1.18 16 20 C -0.07 -0.89 4.97 -104.62 -0.52 -1.41 16 21 C -0.12 -1.44 9.70 -39.59 -0.38 -1.82 16 22 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 23 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 24 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 25 C -0.10 -1.28 9.40 -39.58 -0.37 -1.65 16 26 C 0.03 0.63 4.71 -3.71 -0.02 0.61 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 2.42 5.95 -51.93 -0.31 2.11 16 31 H 0.03 0.74 6.30 -51.93 -0.33 0.41 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.05 1.07 6.21 -51.93 -0.32 0.74 16 34 H 0.08 1.50 6.29 -51.93 -0.33 1.18 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 38 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 39 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 43 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 45 H 0.05 0.97 7.20 -51.93 -0.37 0.60 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -27.96 351.27 -10.49 -38.46 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.41 Total: 3.34 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -2.69 Total: -20.28 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.31 Total: -35.82 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.35 Total: -6.93 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.96 -10.49 -38.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.919 kcal (2) G-P(sol) polarization free energy of solvation -27.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds