Wall clock time and date at job start Tue Mar 31 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47282 * 2 1 4 4 H 1.09001 * 109.47059 * 305.00585 * 3 2 1 5 5 C 1.50695 * 109.47046 * 184.99619 * 3 2 1 6 6 H 1.07999 * 120.00446 * 240.00339 * 5 3 2 7 7 C 1.37877 * 119.99684 * 60.00657 * 5 3 2 8 8 N 1.31521 * 120.00346 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00191 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47295 * 89.99764 * 9 7 5 11 11 H 1.48498 * 109.47637 * 210.00211 * 9 7 5 12 12 H 1.48508 * 109.46889 * 330.00060 * 9 7 5 13 13 N 1.46908 * 109.46719 * 64.99961 * 3 2 1 14 14 C 1.47024 * 110.99261 * 66.32173 * 13 3 2 15 15 C 1.53103 * 109.24985 * 182.34870 * 14 13 3 16 16 O 1.43012 * 109.29295 * 303.21723 * 15 14 13 17 17 C 1.43011 * 113.74271 * 58.65008 * 16 15 14 18 18 H 1.09000 * 109.50955 * 61.30626 * 17 16 15 19 19 C 1.52993 * 109.50936 * 181.39595 * 17 16 15 20 20 C 1.50701 * 109.47401 * 294.99797 * 19 17 16 21 21 C 1.38238 * 120.00256 * 269.73235 * 20 19 17 22 22 C 1.38224 * 120.00174 * 179.76230 * 21 20 19 23 23 C 1.38239 * 120.00261 * 0.50271 * 22 21 20 24 24 C 1.38236 * 119.99716 * 359.74900 * 23 22 21 25 25 C 1.38235 * 120.00023 * 89.99456 * 20 19 17 26 26 C 1.47018 * 110.99661 * 189.99712 * 13 3 2 27 27 H 1.08997 * 109.47017 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47027 * 299.99566 * 1 2 3 29 29 H 1.08998 * 109.47066 * 59.99691 * 1 2 3 30 30 H 1.09004 * 109.46925 * 240.00151 * 2 1 3 31 31 H 1.08998 * 109.47111 * 120.00864 * 2 1 3 32 32 H 0.96995 * 120.00391 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47369 * 62.43595 * 14 13 3 34 34 H 1.08998 * 109.54483 * 302.29802 * 14 13 3 35 35 H 1.09002 * 109.50635 * 183.25881 * 15 14 13 36 36 H 1.09003 * 109.50698 * 63.17493 * 15 14 13 37 37 H 1.09002 * 109.47549 * 54.99592 * 19 17 16 38 38 H 1.09000 * 109.47345 * 175.00047 * 19 17 16 39 39 H 1.08005 * 119.99781 * 359.97438 * 21 20 19 40 40 H 1.08001 * 120.00185 * 180.22427 * 22 21 20 41 41 H 1.07995 * 120.00473 * 179.72340 * 23 22 21 42 42 H 1.07996 * 120.00238 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.99893 * 0.02562 * 25 20 19 44 44 H 1.08994 * 109.50209 * 57.67478 * 26 13 3 45 45 H 1.08997 * 109.50514 * 297.54292 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1473 1.8887 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5548 -0.3504 -0.7602 11 1 6.3830 0.9223 -2.8172 12 1 6.5570 2.0736 -0.6900 13 7 1.6514 2.0992 1.2553 14 6 2.3397 1.4907 2.4032 15 6 1.8627 2.1642 3.6927 16 8 2.0961 3.5724 3.6046 17 6 1.4394 4.1968 2.4983 18 1 0.3611 4.0720 2.5974 19 6 1.7812 5.6879 2.4765 20 6 1.2120 6.3518 3.7038 21 6 -0.0629 6.8855 3.6726 22 6 -0.5868 7.4901 4.7998 23 6 0.1680 7.5704 5.9552 24 6 1.4448 7.0414 5.9848 25 6 1.9667 6.4320 4.8591 26 6 1.9128 3.5448 1.1965 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 3.8292 -0.0611 -2.9499 33 1 3.4156 1.6290 2.2967 34 1 2.1111 0.4257 2.4428 35 1 2.4125 1.7565 4.5411 36 1 0.7969 1.9796 3.8271 37 1 2.8640 5.8124 2.4653 38 1 1.3536 6.1457 1.5845 39 1 -0.6508 6.8269 2.7685 40 1 -1.5842 7.9038 4.7766 41 1 -0.2397 8.0467 6.8345 42 1 2.0346 7.1044 6.8873 43 1 2.9645 6.0192 4.8821 44 1 1.3727 3.9782 0.3548 45 1 2.9818 3.7165 1.0712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:43 Heat of formation + Delta-G solvation = -39.939708 kcal Electronic energy + Delta-G solvation = -23613.299638 eV Core-core repulsion = 20401.556335 eV Total energy + Delta-G solvation = -3211.743303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.83828 -39.81307 -37.67826 -34.67337 -34.50972 -33.02316 -31.67555 -31.45555 -29.39962 -27.97371 -26.21203 -24.51857 -24.08918 -23.35207 -22.03575 -21.42349 -20.82050 -18.39272 -17.63948 -17.36591 -17.17475 -16.45022 -16.26656 -15.82620 -15.73836 -15.45638 -15.24474 -15.00375 -14.56526 -14.17874 -14.00821 -13.83361 -13.49335 -13.32384 -13.17969 -13.05188 -12.88589 -12.73318 -12.57089 -12.38716 -12.19694 -12.05750 -11.82730 -11.74042 -11.58464 -11.48638 -11.15618 -11.09491 -10.45624 -10.36017 -9.72082 -9.49922 -8.99676 -8.06319 -6.28142 0.53542 0.60221 1.34274 1.36843 1.45050 2.37713 2.84689 2.96599 3.12515 3.32350 3.80805 4.04755 4.18803 4.20670 4.25328 4.28538 4.34205 4.38587 4.45944 4.53962 4.57440 4.70561 4.72322 4.73835 4.74233 4.86028 4.89719 4.91714 5.05923 5.10400 5.19881 5.24653 5.26065 5.28150 5.41012 5.47477 5.60901 5.66303 5.70534 5.76534 5.83420 6.02098 6.14540 6.21608 6.30813 6.34624 6.57793 6.91128 7.42427 8.89155 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.003997 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.074770 B = 7004.009753 C = 7508.584216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.220 3.780 4 H 0.005 0.995 5 C -0.552 4.552 6 H 0.046 0.954 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.527 5.527 14 C 0.027 3.973 15 C 0.072 3.928 16 O -0.390 6.390 17 C 0.114 3.886 18 H 0.063 0.937 19 C -0.070 4.070 20 C -0.084 4.084 21 C -0.130 4.130 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.117 4.117 26 C 0.035 3.965 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.262 0.738 33 H 0.022 0.978 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.131 0.869 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.115 0.885 44 H 0.071 0.929 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.930 10.957 13.681 18.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.023 0.977 5 C -0.591 4.591 6 H 0.064 0.936 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.201 1.201 13 N -0.251 5.251 14 C -0.102 4.102 15 C -0.005 4.005 16 O -0.309 6.309 17 C 0.056 3.944 18 H 0.081 0.919 19 C -0.108 4.108 20 C -0.084 4.084 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.148 4.148 25 C -0.135 4.135 26 C -0.094 4.094 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.149 0.851 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.133 0.867 44 H 0.090 0.910 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.314 10.896 13.688 18.963 hybrid contribution 2.080 -0.449 -1.017 2.359 sum -5.234 10.447 12.671 17.236 Atomic orbital electron populations 1.21565 0.96189 0.99873 1.00652 1.21431 0.94566 0.97982 1.00381 1.19064 0.91805 0.91695 0.86108 0.97670 1.21933 0.94102 1.37823 1.05243 0.93566 1.25560 1.01607 0.94903 0.95498 1.69988 1.36184 1.38832 1.09766 0.85786 0.81681 0.78310 0.77227 1.20179 1.20710 1.20127 1.62658 1.56081 1.02179 1.04224 1.22613 0.96448 0.99545 0.91549 1.22707 1.00755 0.80434 0.96623 1.87902 1.73466 1.21371 1.48207 1.22037 0.95951 0.91794 0.84660 0.91949 1.20610 1.01706 0.91720 0.96757 1.19822 0.95051 0.98199 0.95356 1.21296 0.94975 0.98861 0.99662 1.21419 1.00720 0.99415 0.92943 1.21446 0.94484 1.00123 0.98912 1.21396 0.96537 0.98418 0.98429 1.21169 1.00194 0.98958 0.93225 1.22581 0.98671 0.90012 0.98167 0.93487 0.92481 0.94839 0.91892 0.94952 0.92864 0.96010 0.90566 0.87263 0.92310 0.91009 0.88161 0.85075 0.84048 0.84010 0.84657 0.86716 0.91025 0.96245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 9.80 71.98 0.71 -4.23 16 2 C -0.11 -4.95 5.17 30.59 0.16 -4.79 16 3 C 0.22 10.90 1.71 44.16 0.08 10.97 16 4 H 0.01 0.30 8.04 -2.39 -0.02 0.28 16 5 C -0.55 -29.85 7.16 25.60 0.18 -29.66 16 6 H 0.05 2.56 5.79 -2.91 -0.02 2.54 16 7 C 0.02 1.34 5.29 84.65 0.45 1.79 16 8 N -0.91 -51.46 11.29 21.45 0.24 -51.22 16 9 Si 0.94 43.69 29.54 68.60 2.03 45.71 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 N -0.53 -22.01 4.13 -874.33 -3.61 -25.62 16 14 C 0.03 1.05 5.01 86.31 0.43 1.48 16 15 C 0.07 2.24 7.01 72.02 0.50 2.75 16 16 O -0.39 -13.01 9.97 -148.98 -1.48 -14.49 16 17 C 0.11 3.59 2.79 30.63 0.09 3.67 16 18 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 19 C -0.07 -1.88 5.06 29.85 0.15 -1.73 16 20 C -0.08 -2.11 4.97 -19.86 -0.10 -2.21 16 21 C -0.13 -2.85 9.70 22.27 0.22 -2.63 16 22 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 23 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 24 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 25 C -0.12 -2.90 9.40 22.27 0.21 -2.69 16 26 C 0.03 1.34 4.71 86.31 0.41 1.74 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 2.12 7.75 -2.39 -0.02 2.10 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 3.36 5.95 -2.38 -0.01 3.35 16 31 H 0.03 1.48 6.30 -2.39 -0.02 1.47 16 32 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.02 0.96 6.21 -2.39 -0.01 0.95 16 34 H 0.08 2.94 6.29 -2.39 -0.02 2.92 16 35 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 38 H 0.10 2.34 8.08 -2.39 -0.02 2.32 16 39 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 42 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 43 H 0.11 2.90 8.06 -2.91 -0.02 2.88 16 44 H 0.07 2.71 8.09 -2.39 -0.02 2.69 16 45 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 Total: -1.00 -60.66 351.27 2.27 -58.39 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.95 Total: 19.58 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 4.15 Total: -32.36 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -3.37 Total: -76.84 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.48 Total: -14.49 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -60.66 2.27 -58.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.450 kcal (2) G-P(sol) polarization free energy of solvation -60.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds