Wall clock time and date at job start Tue Mar 31 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47235 * 2 1 4 4 H 1.09004 * 109.47073 * 56.27962 * 3 2 1 5 5 C 1.50702 * 109.47338 * 176.28185 * 3 2 1 6 6 H 1.07999 * 120.00157 * 119.99765 * 5 3 2 7 7 C 1.37881 * 119.99743 * 300.00176 * 5 3 2 8 8 N 1.31513 * 119.99996 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99721 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47075 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.46933 * 119.99837 * 9 7 5 12 12 H 1.48493 * 109.46838 * 239.99748 * 9 7 5 13 13 N 1.46897 * 109.47094 * 296.28071 * 3 2 1 14 14 C 1.47015 * 111.00081 * 175.69191 * 13 3 2 15 15 C 1.53094 * 109.25806 * 182.39285 * 14 13 3 16 16 O 1.43020 * 109.26176 * 303.15568 * 15 14 13 17 17 C 1.43017 * 113.73509 * 58.66817 * 16 15 14 18 18 H 1.08994 * 109.53923 * 61.29370 * 17 16 15 19 19 C 1.53007 * 109.50190 * 181.39753 * 17 16 15 20 20 C 1.50702 * 109.46987 * 294.78318 * 19 17 16 21 21 C 1.38240 * 119.99922 * 269.72729 * 20 19 17 22 22 C 1.38234 * 119.99622 * 179.76796 * 21 20 19 23 23 C 1.38234 * 120.00262 * 0.50730 * 22 21 20 24 24 C 1.38235 * 119.99975 * 359.74853 * 23 22 21 25 25 C 1.38234 * 120.00100 * 90.00253 * 20 19 17 26 26 C 1.47010 * 111.00293 * 299.33040 * 13 3 2 27 27 H 1.09004 * 109.47424 * 305.06779 * 1 2 3 28 28 H 1.09005 * 109.47208 * 65.06031 * 1 2 3 29 29 H 1.09003 * 109.47299 * 185.06215 * 1 2 3 30 30 H 1.09001 * 109.47338 * 239.99817 * 2 1 3 31 31 H 1.09004 * 109.46992 * 119.99770 * 2 1 3 32 32 H 0.97002 * 119.99610 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.50783 * 302.32908 * 14 13 3 34 34 H 1.08997 * 109.50241 * 62.45913 * 14 13 3 35 35 H 1.09008 * 109.50633 * 63.08939 * 15 14 13 36 36 H 1.09007 * 109.50957 * 183.17398 * 15 14 13 37 37 H 1.08996 * 109.46628 * 174.78586 * 19 17 16 38 38 H 1.08996 * 109.46991 * 54.78430 * 19 17 16 39 39 H 1.07998 * 119.99870 * 359.97438 * 21 20 19 40 40 H 1.07998 * 119.99398 * 180.22576 * 22 21 20 41 41 H 1.08001 * 119.99884 * 179.72321 * 23 22 21 42 42 H 1.08000 * 120.00601 * 179.97438 * 24 23 22 43 43 H 1.08005 * 119.99635 * 359.97438 * 25 20 19 44 44 H 1.09006 * 109.50692 * 57.66961 * 26 13 3 45 45 H 1.08994 * 109.50537 * 297.54201 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6232 1.9753 0.8548 5 6 3.5442 1.4435 0.0921 6 1 4.1330 1.8939 -0.6932 7 6 4.1686 0.8694 1.1791 8 7 3.4516 0.3214 2.1357 9 14 6.0332 0.8701 1.2930 10 1 6.6019 1.5431 0.0976 11 1 6.4540 1.5965 2.5178 12 1 6.5258 -0.5295 1.3537 13 7 1.6251 2.1086 -1.2418 14 6 2.0097 3.5275 -1.2325 15 6 1.5069 4.1953 -2.5151 16 8 2.0341 3.4988 -3.6475 17 6 1.6783 2.1142 -3.6886 18 1 0.5943 2.0181 -3.7490 19 6 2.3184 1.4585 -4.9139 20 6 1.7299 2.0536 -6.1671 21 6 0.6092 1.4842 -6.7423 22 6 0.0665 2.0330 -7.8892 23 6 0.6507 3.1448 -8.4667 24 6 1.7745 3.7109 -7.8945 25 6 2.3141 3.1653 -6.7447 26 6 2.1828 1.4254 -2.4179 27 1 -0.3634 0.5904 0.8411 28 1 -0.3634 0.4333 -0.9319 29 1 -0.3634 -1.0237 0.0907 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 3.8909 -0.0828 2.9002 33 1 1.5649 4.0195 -0.3675 34 1 3.0953 3.6099 -1.1806 35 1 0.4177 4.1602 -2.5409 36 1 1.8383 5.2336 -2.5389 37 1 2.1242 0.3861 -4.8950 38 1 3.3942 1.6333 -4.8991 39 1 0.1557 0.6127 -6.2938 40 1 -0.8112 1.5903 -8.3364 41 1 0.2293 3.5708 -9.3653 42 1 2.2312 4.5793 -8.3459 43 1 3.1920 3.6077 -6.2975 44 1 1.8645 0.3828 -2.4182 45 1 3.2712 1.4742 -2.3850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:46 Heat of formation + Delta-G solvation = -25.620345 kcal Electronic energy + Delta-G solvation = -23717.151706 eV Core-core repulsion = 20506.029337 eV Total energy + Delta-G solvation = -3211.122369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.57473 -38.68722 -36.01327 -33.57286 -32.58968 -31.25556 -30.81473 -30.22918 -27.70801 -26.40052 -24.75750 -23.10633 -22.48410 -22.30337 -20.84369 -20.06786 -19.01226 -16.75706 -16.37754 -15.99474 -15.77495 -15.13731 -14.75956 -14.59609 -14.34739 -14.10457 -13.57623 -13.41446 -13.33887 -12.91529 -12.78757 -12.59508 -12.07227 -11.93378 -11.68791 -11.43124 -11.25707 -11.02490 -10.93498 -10.88332 -10.82245 -10.68562 -10.57568 -10.32381 -9.80351 -9.70637 -9.52105 -9.21707 -8.89229 -8.82388 -8.56389 -8.39604 -7.19376 -6.02377 -4.15598 1.42549 1.47870 3.23403 3.32436 3.36062 3.84072 4.18463 4.37048 4.78571 4.92989 4.98556 5.05577 5.17485 5.22428 5.45253 5.48724 5.56219 5.61363 5.68090 5.77694 5.83684 5.85803 5.99722 6.05571 6.14920 6.17408 6.25811 6.35639 6.41525 6.51528 6.53568 6.56184 6.64244 6.69913 6.75191 6.81917 7.03927 7.08102 7.14336 7.27259 7.56406 7.66215 7.71975 7.90501 8.10616 8.24992 8.40427 8.93876 9.52139 10.96966 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.004115 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.909733 B = 6802.448831 C = 7180.874270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.214 3.786 4 H 0.039 0.961 5 C -0.543 4.543 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.532 5.532 14 C 0.025 3.975 15 C 0.067 3.933 16 O -0.384 6.384 17 C 0.101 3.899 18 H 0.057 0.943 19 C -0.076 4.076 20 C -0.067 4.067 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.131 4.131 24 C -0.123 4.123 25 C -0.100 4.100 26 C 0.031 3.969 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.025 0.975 30 H 0.033 0.967 31 H 0.093 0.907 32 H 0.261 0.739 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.078 0.922 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 3.645 -15.450 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.108 3.892 4 H 0.057 0.943 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.256 5.256 14 C -0.103 4.103 15 C -0.010 4.010 16 O -0.303 6.303 17 C 0.043 3.957 18 H 0.075 0.925 19 C -0.114 4.114 20 C -0.067 4.067 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.149 4.149 24 C -0.141 4.141 25 C -0.118 4.118 26 C -0.098 4.098 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.096 0.904 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.698 3.611 -15.423 16.833 hybrid contribution 1.785 -0.071 0.543 1.867 sum -3.913 3.541 -14.880 15.788 Atomic orbital electron populations 1.21699 0.98792 0.98424 1.00509 1.21626 0.92240 0.99147 1.02066 1.19308 0.92992 0.91043 0.85906 0.94287 1.21756 0.92722 1.37727 1.05977 0.92505 1.24902 0.97906 0.94993 0.95571 1.69882 1.34824 1.37993 1.09642 0.86630 0.86215 0.77748 0.77985 1.19920 1.21001 1.20973 1.62716 1.57890 1.01025 1.03989 1.22529 0.99795 0.91135 0.96890 1.22631 0.97561 0.95167 0.85640 1.87886 1.75734 1.21568 1.45141 1.22128 0.98026 0.81852 0.93713 0.92467 1.20671 1.00904 0.99362 0.90473 1.19857 0.95394 0.95637 0.95846 1.21082 0.96202 1.00348 0.96201 1.21071 0.99923 0.96743 0.96432 1.21072 0.96743 0.96921 1.00196 1.21124 0.96658 0.99931 0.96434 1.21081 1.00180 0.95433 0.95074 1.22595 0.98850 0.98502 0.89841 0.94109 0.93688 0.95539 0.94827 0.88885 0.92930 0.91016 0.93488 0.93451 0.89701 0.89544 0.90166 0.86193 0.86467 0.86629 0.86471 0.85949 0.90393 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.73 37.15 0.36 -2.36 16 2 C -0.11 -2.59 5.01 -26.73 -0.13 -2.73 16 3 C 0.21 5.14 1.77 -68.86 -0.12 5.02 16 4 H 0.04 1.05 8.13 -51.93 -0.42 0.63 16 5 C -0.54 -14.25 7.11 -34.44 -0.24 -14.49 16 6 H 0.06 1.53 5.79 -52.49 -0.30 1.22 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.88 -24.49 11.30 55.43 0.63 -23.87 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.92 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.53 -10.98 4.21 -227.73 -0.96 -11.94 16 14 C 0.03 0.49 5.37 -3.71 -0.02 0.47 16 15 C 0.07 1.09 7.01 37.21 0.26 1.35 16 16 O -0.38 -6.59 9.98 -35.23 -0.35 -6.94 16 17 C 0.10 1.64 2.79 -26.68 -0.07 1.56 16 18 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 19 C -0.08 -1.06 5.06 -27.88 -0.14 -1.20 16 20 C -0.07 -0.89 4.97 -104.62 -0.52 -1.41 16 21 C -0.12 -1.45 9.70 -39.58 -0.38 -1.84 16 22 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 23 C -0.13 -1.41 10.05 -39.58 -0.40 -1.80 16 24 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 25 C -0.10 -1.29 9.41 -39.58 -0.37 -1.66 16 26 C 0.03 0.59 4.27 -3.72 -0.02 0.57 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.85 7.86 -51.93 -0.41 0.44 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.03 0.76 6.18 -51.93 -0.32 0.44 16 31 H 0.09 2.42 5.98 -51.93 -0.31 2.11 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.05 1.00 6.82 -51.93 -0.35 0.65 16 35 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 37 H 0.09 1.07 8.08 -51.93 -0.42 0.65 16 38 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 44 H 0.08 1.48 6.13 -51.93 -0.32 1.16 16 45 H 0.05 1.03 6.51 -51.93 -0.34 0.69 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -27.97 350.99 -10.51 -38.48 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.40 Total: 3.39 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -2.69 Total: -20.33 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.33 Total: -35.81 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.35 Total: -6.94 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.97 -10.51 -38.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.857 kcal (2) G-P(sol) polarization free energy of solvation -27.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds