Wall clock time and date at job start Tue Mar 31 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47235 * 2 1 4 4 H 1.09004 * 109.47073 * 56.27962 * 3 2 1 5 5 C 1.50702 * 109.47338 * 176.28185 * 3 2 1 6 6 H 1.07999 * 120.00157 * 119.99765 * 5 3 2 7 7 C 1.37881 * 119.99743 * 300.00176 * 5 3 2 8 8 N 1.31513 * 119.99996 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99721 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47075 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.46933 * 119.99837 * 9 7 5 12 12 H 1.48493 * 109.46838 * 239.99748 * 9 7 5 13 13 N 1.46897 * 109.47094 * 296.28071 * 3 2 1 14 14 C 1.47015 * 111.00081 * 175.69191 * 13 3 2 15 15 C 1.53094 * 109.25806 * 182.39285 * 14 13 3 16 16 O 1.43020 * 109.26176 * 303.15568 * 15 14 13 17 17 C 1.43017 * 113.73509 * 58.66817 * 16 15 14 18 18 H 1.08994 * 109.53923 * 61.29370 * 17 16 15 19 19 C 1.53007 * 109.50190 * 181.39753 * 17 16 15 20 20 C 1.50702 * 109.46987 * 294.78318 * 19 17 16 21 21 C 1.38240 * 119.99922 * 269.72729 * 20 19 17 22 22 C 1.38234 * 119.99622 * 179.76796 * 21 20 19 23 23 C 1.38234 * 120.00262 * 0.50730 * 22 21 20 24 24 C 1.38235 * 119.99975 * 359.74853 * 23 22 21 25 25 C 1.38234 * 120.00100 * 90.00253 * 20 19 17 26 26 C 1.47010 * 111.00293 * 299.33040 * 13 3 2 27 27 H 1.09004 * 109.47424 * 305.06779 * 1 2 3 28 28 H 1.09005 * 109.47208 * 65.06031 * 1 2 3 29 29 H 1.09003 * 109.47299 * 185.06215 * 1 2 3 30 30 H 1.09001 * 109.47338 * 239.99817 * 2 1 3 31 31 H 1.09004 * 109.46992 * 119.99770 * 2 1 3 32 32 H 0.97002 * 119.99610 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.50783 * 302.32908 * 14 13 3 34 34 H 1.08997 * 109.50241 * 62.45913 * 14 13 3 35 35 H 1.09008 * 109.50633 * 63.08939 * 15 14 13 36 36 H 1.09007 * 109.50957 * 183.17398 * 15 14 13 37 37 H 1.08996 * 109.46628 * 174.78586 * 19 17 16 38 38 H 1.08996 * 109.46991 * 54.78430 * 19 17 16 39 39 H 1.07998 * 119.99870 * 359.97438 * 21 20 19 40 40 H 1.07998 * 119.99398 * 180.22576 * 22 21 20 41 41 H 1.08001 * 119.99884 * 179.72321 * 23 22 21 42 42 H 1.08000 * 120.00601 * 179.97438 * 24 23 22 43 43 H 1.08005 * 119.99635 * 359.97438 * 25 20 19 44 44 H 1.09006 * 109.50692 * 57.66961 * 26 13 3 45 45 H 1.08994 * 109.50537 * 297.54201 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6232 1.9753 0.8548 5 6 3.5442 1.4435 0.0921 6 1 4.1330 1.8939 -0.6932 7 6 4.1686 0.8694 1.1791 8 7 3.4516 0.3214 2.1357 9 14 6.0332 0.8701 1.2930 10 1 6.6019 1.5431 0.0976 11 1 6.4540 1.5965 2.5178 12 1 6.5258 -0.5295 1.3537 13 7 1.6251 2.1086 -1.2418 14 6 2.0097 3.5275 -1.2325 15 6 1.5069 4.1953 -2.5151 16 8 2.0341 3.4988 -3.6475 17 6 1.6783 2.1142 -3.6886 18 1 0.5943 2.0181 -3.7490 19 6 2.3184 1.4585 -4.9139 20 6 1.7299 2.0536 -6.1671 21 6 0.6092 1.4842 -6.7423 22 6 0.0665 2.0330 -7.8892 23 6 0.6507 3.1448 -8.4667 24 6 1.7745 3.7109 -7.8945 25 6 2.3141 3.1653 -6.7447 26 6 2.1828 1.4254 -2.4179 27 1 -0.3634 0.5904 0.8411 28 1 -0.3634 0.4333 -0.9319 29 1 -0.3634 -1.0237 0.0907 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 3.8909 -0.0828 2.9002 33 1 1.5649 4.0195 -0.3675 34 1 3.0953 3.6099 -1.1806 35 1 0.4177 4.1602 -2.5409 36 1 1.8383 5.2336 -2.5389 37 1 2.1242 0.3861 -4.8950 38 1 3.3942 1.6333 -4.8991 39 1 0.1557 0.6127 -6.2938 40 1 -0.8112 1.5903 -8.3364 41 1 0.2293 3.5708 -9.3653 42 1 2.2312 4.5793 -8.3459 43 1 3.1920 3.6077 -6.2975 44 1 1.8645 0.3828 -2.4182 45 1 3.2712 1.4742 -2.3850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:46 Heat of formation + Delta-G solvation = -40.117803 kcal Electronic energy + Delta-G solvation = -23717.780363 eV Core-core repulsion = 20506.029337 eV Total energy + Delta-G solvation = -3211.751026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85200 -39.80846 -37.67297 -34.71193 -34.48676 -33.04316 -31.67157 -31.43763 -29.35358 -27.90250 -26.36312 -24.78291 -23.69656 -23.35413 -22.02187 -21.49462 -20.81162 -18.42880 -17.55095 -17.44410 -17.24967 -16.48027 -16.12142 -15.82223 -15.72133 -15.45041 -15.27724 -15.02638 -14.57857 -14.17586 -14.04897 -13.75353 -13.48868 -13.29920 -13.24222 -13.04901 -12.82793 -12.78810 -12.52202 -12.37458 -12.17858 -12.12548 -11.87611 -11.74269 -11.60836 -11.42660 -11.13995 -11.08785 -10.45847 -10.36021 -9.71770 -9.49639 -9.00416 -8.06440 -6.28260 0.53934 0.60497 1.32948 1.36698 1.45894 2.37501 2.84935 2.97243 3.12261 3.32727 3.81921 4.05242 4.19191 4.19981 4.25539 4.29918 4.32603 4.38419 4.47895 4.55062 4.60305 4.63178 4.72692 4.73492 4.76769 4.86070 4.89864 4.93734 5.06504 5.10097 5.21140 5.22789 5.26687 5.28756 5.40909 5.46123 5.60063 5.66626 5.70796 5.76698 5.83838 6.01344 6.15218 6.21905 6.31537 6.34220 6.57340 6.91021 7.42304 8.89012 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.004115 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.909733 B = 6802.448831 C = 7180.874270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C 0.220 3.780 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.045 0.955 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.278 1.278 13 N -0.528 5.528 14 C 0.025 3.975 15 C 0.074 3.926 16 O -0.391 6.391 17 C 0.111 3.889 18 H 0.062 0.938 19 C -0.070 4.070 20 C -0.084 4.084 21 C -0.130 4.130 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.118 4.118 26 C 0.036 3.964 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.262 0.738 33 H 0.071 0.929 34 H 0.019 0.981 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.294 3.919 -17.575 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.113 3.887 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.063 0.937 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.252 5.252 14 C -0.104 4.104 15 C -0.003 4.003 16 O -0.310 6.310 17 C 0.053 3.947 18 H 0.080 0.920 19 C -0.108 4.108 20 C -0.084 4.084 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.148 4.148 25 C -0.136 4.136 26 C -0.092 4.092 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.133 0.867 44 H 0.097 0.903 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -6.683 3.891 -17.559 19.186 hybrid contribution 2.071 -0.122 1.170 2.382 sum -4.612 3.769 -16.389 17.437 Atomic orbital electron populations 1.21556 0.96104 0.99754 1.00756 1.21462 0.94586 0.97926 1.00556 1.19081 0.91640 0.91602 0.86416 0.97680 1.21938 0.94029 1.37335 1.05609 0.93729 1.25556 1.01667 0.94912 0.95433 1.69995 1.36190 1.38569 1.10014 0.85734 0.81715 0.77806 0.77742 1.20073 1.20628 1.20404 1.62671 1.57563 1.01690 1.03233 1.22590 0.98185 0.90628 0.98976 1.22668 0.98128 0.95911 0.83550 1.87903 1.75990 1.21943 1.45149 1.22084 0.98237 0.81312 0.93060 0.91997 1.20608 1.00201 1.00009 0.89984 1.19825 0.96371 0.96313 0.95894 1.21299 0.95899 1.00823 0.96754 1.21420 1.00496 0.96658 0.95909 1.21444 0.96165 0.96575 1.00792 1.21393 0.96972 1.00479 0.95928 1.21167 1.00447 0.95881 0.96086 1.22599 0.97088 0.98915 0.90629 0.94818 0.92560 0.93467 0.94721 0.91878 0.92870 0.91069 0.96218 0.92259 0.87163 0.88175 0.91075 0.85058 0.84042 0.84012 0.84666 0.86741 0.90344 0.96174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 9.73 71.98 0.70 -4.14 16 2 C -0.11 -5.00 5.01 30.59 0.15 -4.84 16 3 C 0.22 10.87 1.77 44.17 0.08 10.95 16 4 H 0.01 0.29 8.13 -2.38 -0.02 0.28 16 5 C -0.55 -29.75 7.11 25.60 0.18 -29.57 16 6 H 0.04 2.48 5.79 -2.91 -0.02 2.47 16 7 C 0.02 1.34 5.30 84.66 0.45 1.78 16 8 N -0.91 -51.41 11.30 21.45 0.24 -51.17 16 9 Si 0.94 43.73 29.54 68.60 2.03 45.76 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 N -0.53 -22.03 4.21 -874.39 -3.68 -25.72 16 14 C 0.03 0.98 5.37 86.31 0.46 1.44 16 15 C 0.07 2.32 7.01 72.01 0.50 2.83 16 16 O -0.39 -13.04 9.98 -148.98 -1.49 -14.53 16 17 C 0.11 3.52 2.79 30.63 0.09 3.60 16 18 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 19 C -0.07 -1.90 5.06 29.85 0.15 -1.74 16 20 C -0.08 -2.11 4.97 -19.86 -0.10 -2.21 16 21 C -0.13 -2.85 9.70 22.27 0.22 -2.63 16 22 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 23 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 24 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 25 C -0.12 -2.92 9.41 22.27 0.21 -2.71 16 26 C 0.04 1.40 4.27 86.31 0.37 1.76 16 27 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.06 2.05 7.86 -2.38 -0.02 2.03 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.03 1.57 6.18 -2.39 -0.01 1.56 16 31 H 0.06 3.35 5.98 -2.38 -0.01 3.34 16 32 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 33 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.02 0.87 6.82 -2.39 -0.02 0.85 16 35 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 37 H 0.10 2.36 8.08 -2.39 -0.02 2.34 16 38 H 0.07 2.01 8.09 -2.39 -0.02 2.00 16 39 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 41 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 43 H 0.11 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.08 2.97 6.13 -2.38 -0.01 2.96 16 45 H 0.02 0.88 6.51 -2.39 -0.02 0.87 16 Total: -1.00 -60.78 350.99 2.18 -58.60 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.95 Total: 19.39 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: 4.13 Total: -32.33 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -3.44 Total: -76.89 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -1.49 Total: -14.53 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -60.78 2.18 -58.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.483 kcal (2) G-P(sol) polarization free energy of solvation -60.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds