Wall clock time and date at job start Tue Mar 31 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47035 * 2 1 4 4 H 1.09000 * 109.46794 * 302.90835 * 3 2 1 5 5 C 1.50704 * 109.47144 * 182.91069 * 3 2 1 6 6 H 1.07992 * 120.00154 * 245.31596 * 5 3 2 7 7 C 1.37875 * 119.99869 * 65.03815 * 5 3 2 8 8 N 1.31516 * 120.00496 * 7.17273 * 7 5 3 9 9 Si 1.86800 * 119.99773 * 187.17760 * 7 5 3 10 10 H 1.48503 * 109.47471 * 94.52918 * 9 7 5 11 11 H 1.48508 * 109.47010 * 214.52724 * 9 7 5 12 12 H 1.48495 * 109.47212 * 334.52423 * 9 7 5 13 13 N 1.46890 * 109.47279 * 62.90970 * 3 2 1 14 14 C 1.47017 * 110.99972 * 56.36393 * 13 3 2 15 15 C 1.53101 * 109.25619 * 182.39348 * 14 13 3 16 16 H 1.09000 * 109.50438 * 183.21853 * 15 14 13 17 17 C 1.52995 * 109.54303 * 63.10773 * 15 14 13 18 18 O 1.43021 * 109.25816 * 303.14851 * 15 14 13 19 19 C 1.43016 * 113.73572 * 58.67376 * 18 15 14 20 20 C 1.47019 * 111.00362 * 180.02562 * 13 3 2 21 21 H 1.09001 * 109.50363 * 297.54525 * 20 13 3 22 22 C 1.50696 * 109.50257 * 57.66831 * 20 13 3 23 23 C 1.38237 * 120.00139 * 39.73786 * 22 20 13 24 24 C 1.38233 * 119.99950 * 179.74198 * 23 22 20 25 25 C 1.38239 * 120.00003 * 0.54140 * 24 23 22 26 26 C 1.38237 * 119.99969 * 359.70834 * 25 24 23 27 27 C 1.38232 * 119.99838 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47291 * 300.00377 * 1 2 3 29 29 H 1.08999 * 109.47110 * 59.99997 * 1 2 3 30 30 H 1.09001 * 109.46945 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47400 * 240.00160 * 2 1 3 32 32 H 1.08999 * 109.47110 * 120.00003 * 2 1 3 33 33 H 0.96998 * 120.00595 * 180.02562 * 8 7 5 34 34 H 1.08990 * 109.50936 * 302.32712 * 14 13 3 35 35 H 1.08997 * 109.50583 * 62.46125 * 14 13 3 36 36 H 1.08998 * 109.47251 * 300.19587 * 17 15 14 37 37 H 1.08998 * 109.47300 * 60.19693 * 17 15 14 38 38 H 1.09001 * 109.46878 * 180.19364 * 17 15 14 39 39 H 1.08994 * 109.50741 * 181.39022 * 19 18 15 40 40 H 1.09008 * 109.54264 * 61.28538 * 19 18 15 41 41 H 1.08000 * 120.00022 * 359.97438 * 23 22 20 42 42 H 1.08003 * 120.00154 * 180.27380 * 24 23 22 43 43 H 1.08005 * 119.99895 * 179.72305 * 25 24 23 44 44 H 1.07993 * 119.99679 * 179.97438 * 26 25 24 45 45 H 1.07998 * 119.99700 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6346 1.9711 -0.8628 5 6 3.5453 1.4432 -0.0722 6 1 4.1255 1.8195 0.7573 7 6 4.1818 0.9580 -1.1948 8 7 3.4805 0.6263 -2.2568 9 14 6.0404 0.7715 -1.2074 10 1 6.4013 -0.6171 -0.8242 11 1 6.5576 1.0594 -2.5694 12 1 6.6400 1.7240 -0.2387 13 7 1.6086 2.1144 1.2329 14 6 2.0653 1.3790 2.4212 15 6 1.5446 2.0790 3.6793 16 1 1.9280 1.5704 4.5639 17 6 0.0152 2.0406 3.6905 18 8 1.9883 3.4387 3.6804 19 6 1.5608 4.1846 2.5375 20 6 2.0811 3.5062 1.2676 21 1 3.1710 3.5206 1.2681 22 6 1.5678 4.2421 0.0569 23 6 0.2805 4.0174 -0.3942 24 6 -0.1921 4.6964 -1.5017 25 6 0.6262 5.5918 -2.1647 26 6 1.9152 5.8126 -1.7167 27 6 2.3860 5.1377 -0.6060 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9283 0.2846 -3.0465 34 1 1.6825 0.3591 2.3874 35 1 3.1549 1.3590 2.4403 36 1 -0.3675 2.5480 2.8050 37 1 -0.3223 1.0042 3.6897 38 1 -0.3543 2.5423 4.5849 39 1 1.9558 5.1988 2.5963 40 1 0.4716 4.2192 2.5112 41 1 -0.3571 3.3142 0.1208 42 1 -1.1993 4.5242 -1.8515 43 1 0.2584 6.1190 -3.0326 44 1 2.5546 6.5118 -2.2349 45 1 3.3931 5.3099 -0.2562 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:38 Heat of formation + Delta-G solvation = -16.819449 kcal Electronic energy + Delta-G solvation = -25133.863055 eV Core-core repulsion = 21923.122322 eV Total energy + Delta-G solvation = -3210.740734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.88820 -38.16877 -36.04242 -33.04225 -32.36325 -31.27680 -30.32131 -29.82428 -27.70482 -26.57152 -24.71743 -23.55306 -22.55799 -21.97804 -20.67883 -19.64304 -18.58524 -16.75542 -16.14246 -16.00882 -15.50357 -14.88917 -14.64345 -14.53864 -14.11372 -13.80595 -13.47089 -13.20532 -12.85238 -12.81364 -12.56208 -12.20238 -12.03516 -11.82787 -11.73682 -11.39109 -11.31640 -11.03373 -10.91465 -10.75710 -10.63430 -10.49353 -10.42329 -10.20785 -9.81030 -9.59013 -9.52498 -9.28566 -9.00735 -8.41227 -8.28402 -7.98237 -7.19524 -6.00917 -4.09497 1.94266 2.00413 3.25635 3.33895 3.36488 4.25036 4.35795 4.40339 4.85480 5.25611 5.32761 5.43030 5.44593 5.48232 5.51894 5.61341 5.68120 5.72634 5.83903 5.94015 6.06885 6.13037 6.15446 6.22554 6.30319 6.33427 6.36183 6.52600 6.54245 6.54856 6.66104 6.67811 6.76037 6.96616 7.01588 7.04372 7.13218 7.19689 7.30183 7.56128 7.57679 7.64208 7.68205 7.89681 8.08503 8.26734 8.38886 8.98636 9.56477 11.01564 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.010850 B = 0.008842 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.036572 B = 3166.000253 C = 4205.508538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C 0.212 3.788 4 H 0.057 0.943 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.074 3.926 8 N -0.881 5.881 9 Si 0.879 3.121 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.520 5.520 14 C 0.028 3.972 15 C 0.085 3.915 16 H 0.092 0.908 17 C -0.171 4.171 18 O -0.385 6.385 19 C 0.071 3.929 20 C 0.094 3.906 21 H 0.064 0.936 22 C -0.047 4.047 23 C -0.089 4.089 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.105 4.105 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.125 0.875 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 5.896 5.743 10.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C 0.106 3.894 4 H 0.074 0.926 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.130 4.130 8 N -0.519 5.519 9 Si 0.708 3.292 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.245 5.245 14 C -0.101 4.101 15 C 0.027 3.973 16 H 0.110 0.890 17 C -0.228 4.228 18 O -0.304 6.304 19 C -0.006 4.006 20 C -0.015 4.015 21 H 0.081 0.919 22 C -0.047 4.047 23 C -0.107 4.107 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.124 4.124 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.143 0.857 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.137 5.899 5.706 10.876 hybrid contribution 2.019 -0.485 -0.587 2.158 sum -5.118 5.414 5.118 9.039 Atomic orbital electron populations 1.21726 0.98581 0.98527 1.00835 1.21587 0.92516 0.99501 1.01062 1.19362 0.92913 0.90402 0.86738 0.92565 1.21627 0.92614 1.42042 1.01800 0.92824 1.24845 0.97468 0.95321 0.95318 1.69938 1.35180 1.43581 1.03201 0.86785 0.86760 0.78396 0.77296 1.20793 1.21317 1.20056 1.62753 1.57903 1.00095 1.03703 1.22631 0.99150 0.98253 0.90063 1.22338 0.94083 0.82671 0.98185 0.88994 1.22243 0.96350 1.02190 1.02022 1.87964 1.76316 1.23090 1.43024 1.22670 0.98967 0.94340 0.84620 1.20987 0.98744 0.90247 0.91503 0.91863 1.19550 0.93696 0.95231 0.96252 1.20994 0.95677 0.97894 0.96147 1.21045 0.99478 0.97601 0.96639 1.20970 0.94586 0.99472 0.99766 1.20951 0.95845 1.00527 0.97077 1.20960 0.99008 0.96709 0.95714 0.93148 0.94013 0.95593 0.90654 0.94637 0.93011 0.90003 0.93574 0.90886 0.92111 0.93386 0.89672 0.92657 0.85667 0.86941 0.87124 0.86961 0.86735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.78 37.16 0.36 -2.28 16 2 C -0.11 -2.41 4.91 -26.73 -0.13 -2.54 16 3 C 0.21 4.88 1.27 -68.87 -0.09 4.79 16 4 H 0.06 1.48 6.22 -51.93 -0.32 1.16 16 5 C -0.54 -13.99 7.02 -34.44 -0.24 -14.24 16 6 H 0.05 1.43 5.83 -52.49 -0.31 1.12 16 7 C 0.07 1.97 5.21 -17.82 -0.09 1.88 16 8 N -0.88 -24.59 12.02 55.43 0.67 -23.92 16 9 Si 0.88 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.52 -10.03 2.61 -221.18 -0.58 -10.61 16 14 C 0.03 0.51 4.36 -3.71 -0.02 0.49 16 15 C 0.09 1.33 3.92 -26.68 -0.10 1.23 16 16 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 17 C -0.17 -2.35 8.89 37.15 0.33 -2.02 16 18 O -0.39 -6.61 10.64 -35.23 -0.37 -6.99 16 19 C 0.07 1.16 5.87 37.20 0.22 1.38 16 20 C 0.09 1.77 1.84 -68.76 -0.13 1.65 16 21 H 0.06 1.37 6.52 -51.93 -0.34 1.03 16 22 C -0.05 -0.86 3.80 -104.62 -0.40 -1.26 16 23 C -0.09 -1.56 8.19 -39.58 -0.32 -1.88 16 24 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 25 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 26 C -0.13 -2.05 10.05 -39.58 -0.40 -2.44 16 27 C -0.11 -1.89 9.67 -39.58 -0.38 -2.27 16 28 H 0.05 0.89 7.69 -51.93 -0.40 0.49 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.92 6.71 -51.93 -0.35 1.57 16 32 H 0.03 0.77 6.13 -51.93 -0.32 0.45 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.08 1.48 6.05 -51.93 -0.31 1.16 16 35 H 0.05 0.96 6.68 -51.93 -0.35 0.61 16 36 H 0.07 1.09 6.13 -51.93 -0.32 0.77 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.06 0.86 6.50 -51.92 -0.34 0.52 16 41 H 0.13 2.17 7.71 -52.49 -0.40 1.77 16 42 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 43 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 44 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.11 1.97 8.04 -52.49 -0.42 1.55 16 LS Contribution 342.55 15.07 5.16 5.16 Total: -1.00 -27.53 342.55 -9.45 -36.98 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.12 Total: 5.71 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -2.19 Total: -22.42 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.09 Total: -34.53 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.37 Total: -6.99 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.53 -9.45 -36.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.164 kcal (2) G-P(sol) polarization free energy of solvation -27.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds