Wall clock time and date at job start Tue Mar 31 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47035 * 2 1 4 4 H 1.09000 * 109.46794 * 302.90835 * 3 2 1 5 5 C 1.50704 * 109.47144 * 182.91069 * 3 2 1 6 6 H 1.07992 * 120.00154 * 245.31596 * 5 3 2 7 7 C 1.37875 * 119.99869 * 65.03815 * 5 3 2 8 8 N 1.31516 * 120.00496 * 7.17273 * 7 5 3 9 9 Si 1.86800 * 119.99773 * 187.17760 * 7 5 3 10 10 H 1.48503 * 109.47471 * 94.52918 * 9 7 5 11 11 H 1.48508 * 109.47010 * 214.52724 * 9 7 5 12 12 H 1.48495 * 109.47212 * 334.52423 * 9 7 5 13 13 N 1.46890 * 109.47279 * 62.90970 * 3 2 1 14 14 C 1.47017 * 110.99972 * 56.36393 * 13 3 2 15 15 C 1.53101 * 109.25619 * 182.39348 * 14 13 3 16 16 H 1.09000 * 109.50438 * 183.21853 * 15 14 13 17 17 C 1.52995 * 109.54303 * 63.10773 * 15 14 13 18 18 O 1.43021 * 109.25816 * 303.14851 * 15 14 13 19 19 C 1.43016 * 113.73572 * 58.67376 * 18 15 14 20 20 C 1.47019 * 111.00362 * 180.02562 * 13 3 2 21 21 H 1.09001 * 109.50363 * 297.54525 * 20 13 3 22 22 C 1.50696 * 109.50257 * 57.66831 * 20 13 3 23 23 C 1.38237 * 120.00139 * 39.73786 * 22 20 13 24 24 C 1.38233 * 119.99950 * 179.74198 * 23 22 20 25 25 C 1.38239 * 120.00003 * 0.54140 * 24 23 22 26 26 C 1.38237 * 119.99969 * 359.70834 * 25 24 23 27 27 C 1.38232 * 119.99838 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47291 * 300.00377 * 1 2 3 29 29 H 1.08999 * 109.47110 * 59.99997 * 1 2 3 30 30 H 1.09001 * 109.46945 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47400 * 240.00160 * 2 1 3 32 32 H 1.08999 * 109.47110 * 120.00003 * 2 1 3 33 33 H 0.96998 * 120.00595 * 180.02562 * 8 7 5 34 34 H 1.08990 * 109.50936 * 302.32712 * 14 13 3 35 35 H 1.08997 * 109.50583 * 62.46125 * 14 13 3 36 36 H 1.08998 * 109.47251 * 300.19587 * 17 15 14 37 37 H 1.08998 * 109.47300 * 60.19693 * 17 15 14 38 38 H 1.09001 * 109.46878 * 180.19364 * 17 15 14 39 39 H 1.08994 * 109.50741 * 181.39022 * 19 18 15 40 40 H 1.09008 * 109.54264 * 61.28538 * 19 18 15 41 41 H 1.08000 * 120.00022 * 359.97438 * 23 22 20 42 42 H 1.08003 * 120.00154 * 180.27380 * 24 23 22 43 43 H 1.08005 * 119.99895 * 179.72305 * 25 24 23 44 44 H 1.07993 * 119.99679 * 179.97438 * 26 25 24 45 45 H 1.07998 * 119.99700 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6346 1.9711 -0.8628 5 6 3.5453 1.4432 -0.0722 6 1 4.1255 1.8195 0.7573 7 6 4.1818 0.9580 -1.1948 8 7 3.4805 0.6263 -2.2568 9 14 6.0404 0.7715 -1.2074 10 1 6.4013 -0.6171 -0.8242 11 1 6.5576 1.0594 -2.5694 12 1 6.6400 1.7240 -0.2387 13 7 1.6086 2.1144 1.2329 14 6 2.0653 1.3790 2.4212 15 6 1.5446 2.0790 3.6793 16 1 1.9280 1.5704 4.5639 17 6 0.0152 2.0406 3.6905 18 8 1.9883 3.4387 3.6804 19 6 1.5608 4.1846 2.5375 20 6 2.0811 3.5062 1.2676 21 1 3.1710 3.5206 1.2681 22 6 1.5678 4.2421 0.0569 23 6 0.2805 4.0174 -0.3942 24 6 -0.1921 4.6964 -1.5017 25 6 0.6262 5.5918 -2.1647 26 6 1.9152 5.8126 -1.7167 27 6 2.3860 5.1377 -0.6060 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9283 0.2846 -3.0465 34 1 1.6825 0.3591 2.3874 35 1 3.1549 1.3590 2.4403 36 1 -0.3675 2.5480 2.8050 37 1 -0.3223 1.0042 3.6897 38 1 -0.3543 2.5423 4.5849 39 1 1.9558 5.1988 2.5963 40 1 0.4716 4.2192 2.5112 41 1 -0.3571 3.3142 0.1208 42 1 -1.1993 4.5242 -1.8515 43 1 0.2584 6.1190 -3.0326 44 1 2.5546 6.5118 -2.2349 45 1 3.3931 5.3099 -0.2562 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:37 Heat of formation + Delta-G solvation = -30.692813 kcal Electronic energy + Delta-G solvation = -25134.464649 eV Core-core repulsion = 21923.122322 eV Total energy + Delta-G solvation = -3211.342328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.33058 -39.47835 -37.66732 -34.67810 -34.01348 -32.91552 -31.62691 -31.19245 -29.18508 -28.20840 -26.36181 -25.01545 -24.19178 -23.29299 -22.01864 -21.33271 -20.14839 -18.44501 -17.72962 -17.39390 -16.93643 -16.50701 -16.25854 -15.92546 -15.63160 -15.30869 -14.92246 -14.77838 -14.54448 -14.11246 -13.92681 -13.66273 -13.47974 -13.30212 -13.22652 -13.03109 -12.92251 -12.69382 -12.51189 -12.32888 -12.22232 -11.97634 -11.84951 -11.76013 -11.59608 -11.25484 -11.10216 -11.01160 -10.46297 -10.41235 -9.62659 -9.35401 -8.93821 -8.05286 -6.20825 0.62417 0.68558 1.30354 1.34184 1.41121 2.38288 2.94810 3.02997 3.17078 3.31553 3.95525 4.11249 4.16809 4.20312 4.27941 4.35383 4.37351 4.42118 4.50870 4.57517 4.71333 4.73149 4.74576 4.82082 4.85309 4.90510 4.97505 5.09091 5.13407 5.23037 5.24098 5.28454 5.34645 5.42904 5.45578 5.55394 5.62939 5.70718 5.75289 5.80876 5.90170 6.00153 6.23245 6.27482 6.31459 6.37178 6.63724 6.98994 7.47387 8.92717 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.010850 B = 0.008842 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.036572 B = 3166.000253 C = 4205.508538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.224 3.776 4 H 0.026 0.974 5 C -0.542 4.542 6 H 0.038 0.962 7 C 0.030 3.970 8 N -0.907 5.907 9 Si 0.929 3.071 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.504 5.504 14 C 0.028 3.972 15 C 0.086 3.914 16 H 0.113 0.887 17 C -0.162 4.162 18 O -0.397 6.397 19 C 0.079 3.921 20 C 0.098 3.902 21 H 0.024 0.976 22 C -0.065 4.065 23 C -0.100 4.100 24 C -0.132 4.132 25 C -0.130 4.130 26 C -0.131 4.131 27 C -0.130 4.130 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.259 0.741 34 H 0.086 0.914 35 H 0.014 0.986 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.125 0.875 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.135 0.865 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.280 6.403 6.384 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.044 0.956 5 C -0.581 4.581 6 H 0.056 0.944 7 C -0.170 4.170 8 N -0.546 5.546 9 Si 0.757 3.243 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.228 5.228 14 C -0.101 4.101 15 C 0.029 3.971 16 H 0.130 0.870 17 C -0.220 4.220 18 O -0.316 6.316 19 C 0.002 3.998 20 C -0.011 4.011 21 H 0.042 0.958 22 C -0.065 4.065 23 C -0.119 4.119 24 C -0.150 4.150 25 C -0.148 4.148 26 C -0.149 4.149 27 C -0.149 4.149 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.032 0.968 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.088 0.912 41 H 0.143 0.857 42 H 0.157 0.843 43 H 0.160 0.840 44 H 0.153 0.847 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.670 6.409 6.365 12.520 hybrid contribution 2.513 -0.607 -0.786 2.703 sum -6.156 5.801 5.579 10.133 Atomic orbital electron populations 1.21576 0.95650 0.99933 1.01133 1.21443 0.95067 0.98338 0.99386 1.19038 0.90966 0.90841 0.87426 0.95642 1.21854 0.94373 1.40904 1.00966 0.94367 1.25417 1.00674 0.95597 0.95299 1.70036 1.36274 1.44714 1.03550 0.85996 0.83025 0.78262 0.77054 1.20348 1.21134 1.20280 1.62701 1.57096 1.00303 1.02718 1.22690 0.97290 0.98953 0.91120 1.22457 0.95697 0.81790 0.97157 0.86965 1.22165 0.94248 1.03192 1.02353 1.87955 1.76817 1.23744 1.43059 1.22656 0.99665 0.94481 0.82988 1.20961 0.96482 0.90150 0.93526 0.95759 1.19601 0.94492 0.95887 0.96561 1.21063 0.95320 0.98433 0.97048 1.21403 1.00797 0.96947 0.95829 1.21373 0.94057 0.99057 1.00351 1.21274 0.96735 1.00450 0.96419 1.21114 0.99028 0.97771 0.96952 0.91608 0.94836 0.93622 0.94099 0.94454 0.93204 0.89575 0.96816 0.91966 0.90789 0.91606 0.88436 0.91227 0.85730 0.84317 0.83968 0.84745 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.78 71.98 0.70 -3.90 16 2 C -0.10 -4.67 4.91 30.59 0.15 -4.52 16 3 C 0.22 10.59 1.27 44.17 0.06 10.64 16 4 H 0.03 1.38 6.22 -2.39 -0.01 1.37 16 5 C -0.54 -28.97 7.02 25.60 0.18 -28.79 16 6 H 0.04 2.13 5.83 -2.91 -0.02 2.11 16 7 C 0.03 1.67 5.21 84.65 0.44 2.11 16 8 N -0.91 -51.88 12.02 21.45 0.26 -51.62 16 9 Si 0.93 44.32 29.54 68.60 2.03 46.35 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 N -0.50 -19.63 2.61 -853.68 -2.23 -21.86 16 14 C 0.03 1.03 4.36 86.31 0.38 1.40 16 15 C 0.09 2.57 3.92 30.63 0.12 2.69 16 16 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 17 C -0.16 -4.01 8.89 71.98 0.64 -3.37 16 18 O -0.40 -13.18 10.64 -148.98 -1.59 -14.76 16 19 C 0.08 2.52 5.87 72.01 0.42 2.94 16 20 C 0.10 3.77 1.84 44.17 0.08 3.85 16 21 H 0.02 1.12 6.52 -2.39 -0.02 1.10 16 22 C -0.06 -2.43 3.80 -19.87 -0.08 -2.50 16 23 C -0.10 -3.47 8.19 22.27 0.18 -3.29 16 24 C -0.13 -4.00 10.05 22.27 0.22 -3.77 16 25 C -0.13 -3.78 10.05 22.27 0.22 -3.56 16 26 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16 27 C -0.13 -4.75 9.67 22.27 0.22 -4.53 16 28 H 0.06 2.19 7.69 -2.39 -0.02 2.18 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 2.12 6.71 -2.39 -0.02 2.10 16 32 H 0.04 1.62 6.13 -2.39 -0.01 1.61 16 33 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.09 3.05 6.05 -2.39 -0.01 3.03 16 35 H 0.01 0.58 6.68 -2.39 -0.02 0.57 16 36 H 0.06 1.68 6.13 -2.39 -0.01 1.67 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.07 2.05 6.50 -2.38 -0.02 2.03 16 41 H 0.12 4.23 7.71 -2.91 -0.02 4.20 16 42 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 44 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 45 H 0.11 3.93 8.04 -2.91 -0.02 3.90 16 Total: -1.00 -60.66 342.55 3.59 -57.06 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.96 Total: 23.32 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 4.17 Total: -38.49 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.97 Total: -73.48 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.59 Total: -14.76 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -60.66 3.59 -57.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.370 kcal (2) G-P(sol) polarization free energy of solvation -60.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds