Wall clock time and date at job start Tue Mar 31 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47119 * 2 1 4 4 H 1.08997 * 109.46966 * 301.31959 * 3 2 1 5 5 C 1.50700 * 109.47101 * 181.31480 * 3 2 1 6 6 H 1.07994 * 120.00282 * 245.39862 * 5 3 2 7 7 C 1.37878 * 119.99673 * 65.67852 * 5 3 2 8 8 N 1.31510 * 120.00313 * 8.37202 * 7 5 3 9 9 Si 1.86797 * 119.99649 * 188.36962 * 7 5 3 10 10 H 1.48494 * 109.47595 * 5.00460 * 9 7 5 11 11 H 1.48502 * 109.47237 * 125.00717 * 9 7 5 12 12 H 1.48511 * 109.47288 * 245.00393 * 9 7 5 13 13 N 1.46899 * 109.46503 * 61.31782 * 3 2 1 14 14 C 1.47007 * 111.00553 * 41.15877 * 13 3 2 15 15 C 1.53096 * 109.25979 * 177.60595 * 14 13 3 16 16 O 1.43012 * 109.26218 * 56.84961 * 15 14 13 17 17 C 1.43016 * 113.73436 * 301.33200 * 16 15 14 18 18 C 1.47024 * 110.99948 * 277.51945 * 13 3 2 19 19 H 1.08998 * 109.49999 * 62.46289 * 18 13 3 20 20 C 1.53002 * 109.50773 * 302.33331 * 18 13 3 21 21 C 1.50694 * 109.46744 * 176.77999 * 20 18 13 22 22 C 1.38230 * 119.99949 * 275.41761 * 21 20 18 23 23 C 1.38239 * 119.99923 * 179.79476 * 22 21 20 24 24 C 1.38232 * 119.99909 * 0.43697 * 23 22 21 25 25 C 1.38234 * 120.00199 * 359.81564 * 24 23 22 26 26 C 1.38231 * 119.99819 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47131 * 41.29118 * 1 2 3 28 28 H 1.09000 * 109.47154 * 161.28800 * 1 2 3 29 29 H 1.09000 * 109.46907 * 281.28379 * 1 2 3 30 30 H 1.09006 * 109.47298 * 240.00457 * 2 1 3 31 31 H 1.08996 * 109.47343 * 120.00061 * 2 1 3 32 32 H 0.96998 * 120.00334 * 184.98753 * 8 7 5 33 33 H 1.09002 * 109.50504 * 297.54296 * 14 13 3 34 34 H 1.08999 * 109.50449 * 57.66831 * 14 13 3 35 35 H 1.09000 * 109.50518 * 296.91247 * 15 14 13 36 36 H 1.09004 * 109.54075 * 176.80365 * 15 14 13 37 37 H 1.08994 * 109.50934 * 298.73117 * 17 16 15 38 38 H 1.09001 * 109.50761 * 178.60248 * 17 16 15 39 39 H 1.09005 * 109.46850 * 296.78299 * 20 18 13 40 40 H 1.08998 * 109.47315 * 56.77885 * 20 18 13 41 41 H 1.07997 * 120.00214 * 359.97438 * 22 21 20 42 42 H 1.08005 * 120.00029 * 180.27507 * 23 22 21 43 43 H 1.08001 * 119.99684 * 179.83810 * 24 23 22 44 44 H 1.07999 * 120.00061 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.00144 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6575 1.9632 -0.8779 5 6 3.5467 1.4427 -0.0326 6 1 4.1050 1.8256 0.8088 7 6 4.2122 0.9593 -1.1391 8 7 3.5415 0.6522 -2.2278 9 14 6.0668 0.7406 -1.0917 10 1 6.5657 1.0390 0.2747 11 1 6.4094 -0.6594 -1.4491 12 1 6.6996 1.6685 -2.0633 13 7 1.5765 2.1257 1.2151 14 6 1.6767 1.2432 2.3865 15 6 1.2413 2.0121 3.6367 16 8 -0.0857 2.5100 3.4461 17 6 -0.2194 3.3736 2.3140 18 6 0.2011 2.6185 1.0503 19 1 -0.4707 1.7754 0.8895 20 6 0.1369 3.5610 -0.1533 21 6 -1.2874 4.0033 -0.3693 22 6 -2.1536 3.2119 -1.1001 23 6 -3.4613 3.6157 -1.2947 24 6 -3.9002 4.8152 -0.7661 25 6 -3.0326 5.6091 -0.0397 26 6 -1.7261 5.2033 0.1586 27 1 -0.3633 0.7721 -0.6781 28 1 -0.3633 -0.9733 -0.3297 29 1 -0.3633 0.2011 1.0078 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.9984 0.2448 -2.9803 33 1 1.0284 0.3781 2.2470 34 1 2.7080 0.9107 2.5045 35 1 1.9221 2.8462 3.8065 36 1 1.2596 1.3459 4.4993 37 1 0.4189 4.2473 2.4453 38 1 -1.2577 3.6916 2.2193 39 1 0.7638 4.4328 0.0341 40 1 0.4945 3.0406 -1.0418 41 1 -1.8096 2.2768 -1.5166 42 1 -4.1394 2.9952 -1.8619 43 1 -4.9212 5.1319 -0.9203 44 1 -3.3754 6.5465 0.3730 45 1 -1.0483 5.8234 0.7265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:40 Heat of formation + Delta-G solvation = -8.511339 kcal Electronic energy + Delta-G solvation = -24475.468056 eV Core-core repulsion = 21265.087589 eV Total energy + Delta-G solvation = -3210.380467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91465 -38.70474 -36.29287 -33.76316 -32.40156 -30.90734 -30.72995 -30.05221 -27.97145 -26.32079 -25.28527 -23.16621 -22.50897 -22.34382 -20.77670 -20.11642 -18.86265 -16.69948 -16.49375 -15.98809 -15.52049 -15.20425 -14.88340 -14.60394 -14.41235 -14.20747 -14.01379 -13.45974 -13.25523 -12.84924 -12.60107 -12.51763 -12.41013 -11.75770 -11.57211 -11.41904 -11.34641 -11.17941 -10.91913 -10.83661 -10.68464 -10.55488 -10.46518 -10.28178 -10.11186 -9.84661 -9.60406 -9.14317 -8.85234 -8.78313 -8.46372 -8.25621 -7.11334 -6.05174 -4.04275 1.50832 1.53384 3.28965 3.37905 3.41952 3.91881 4.28144 4.40470 4.74169 5.00297 5.07037 5.17133 5.26409 5.28866 5.38121 5.56384 5.61565 5.64938 5.68412 5.73605 5.78651 5.91878 5.98781 6.02687 6.06052 6.10006 6.17330 6.26087 6.30396 6.37094 6.49669 6.54235 6.60279 6.62478 6.63917 6.81194 6.89687 6.92722 7.15405 7.16601 7.38312 7.51127 7.56975 7.84139 8.13244 8.28183 8.55027 9.01808 9.59338 11.04098 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.005380 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.395418 B = 5202.821766 C = 5963.094523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.145 4.145 3 C 0.209 3.791 4 H 0.055 0.945 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.521 5.521 14 C 0.023 3.977 15 C 0.061 3.939 16 O -0.393 6.393 17 C 0.070 3.930 18 C 0.037 3.963 19 H 0.067 0.933 20 C -0.080 4.080 21 C -0.066 4.066 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.133 4.133 25 C -0.121 4.121 26 C -0.120 4.120 27 H 0.048 0.952 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.259 0.741 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.334 5.306 4.984 13.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.185 4.185 3 C 0.103 3.897 4 H 0.072 0.928 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.246 5.246 14 C -0.105 4.105 15 C -0.016 4.016 16 O -0.312 6.312 17 C -0.007 4.007 18 C -0.072 4.072 19 H 0.084 0.916 20 C -0.117 4.117 21 C -0.066 4.066 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.151 4.151 25 C -0.139 4.139 26 C -0.138 4.138 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.126 5.662 4.985 13.442 hybrid contribution 0.736 -0.905 -0.494 1.267 sum -10.390 4.757 4.491 12.278 Atomic orbital electron populations 1.22216 0.99327 0.99853 0.99851 1.22179 0.91807 1.02464 1.02010 1.19535 0.95168 0.88082 0.86886 0.92763 1.21121 0.90517 1.40302 1.01438 0.92063 1.24891 0.98095 0.96217 0.94805 1.69961 1.36255 1.42907 1.04073 0.86597 0.86126 0.77526 0.78081 1.19787 1.21229 1.21152 1.62577 1.17888 1.38783 1.05335 1.22695 1.02082 0.94884 0.90878 1.22731 0.83726 0.97657 0.97522 1.87890 1.29669 1.66005 1.47647 1.22730 1.00689 0.92212 0.85043 1.22559 0.92901 0.97666 0.94048 0.91600 1.20763 0.91206 1.00253 0.99519 1.20066 0.96297 0.94201 0.96072 1.21153 0.93493 0.99844 0.98864 1.21118 0.95928 0.96641 1.00019 1.21059 0.99430 0.95331 0.99324 1.21089 0.93927 0.99610 0.99311 1.21110 0.95931 0.96477 1.00320 0.93272 0.94695 0.93581 0.90364 0.93846 0.93080 0.94095 0.89547 0.92944 0.89621 0.93137 0.89577 0.90462 0.89010 0.86015 0.86433 0.86628 0.86476 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.02 37.16 0.30 -2.65 16 2 C -0.15 -3.23 4.73 -26.73 -0.13 -3.36 16 3 C 0.21 4.88 1.62 -68.86 -0.11 4.77 16 4 H 0.05 1.38 5.24 -51.93 -0.27 1.11 16 5 C -0.50 -13.00 8.19 -34.44 -0.28 -13.28 16 6 H 0.06 1.64 7.79 -52.49 -0.41 1.23 16 7 C 0.06 1.63 5.21 -17.82 -0.09 1.54 16 8 N -0.89 -24.72 12.11 55.43 0.67 -24.05 16 9 Si 0.89 20.91 29.55 -169.99 -5.02 15.88 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.52 -10.56 4.39 -219.79 -0.96 -11.52 16 14 C 0.02 0.43 4.36 -3.72 -0.02 0.41 16 15 C 0.06 0.98 7.01 37.21 0.26 1.24 16 16 O -0.39 -6.81 10.83 -35.23 -0.38 -7.19 16 17 C 0.07 1.14 5.81 37.21 0.22 1.36 16 18 C 0.04 0.65 1.45 -67.59 -0.10 0.56 16 19 H 0.07 1.22 3.88 -51.93 -0.20 1.01 16 20 C -0.08 -1.36 4.69 -27.88 -0.13 -1.49 16 21 C -0.07 -0.97 4.50 -104.63 -0.47 -1.44 16 22 C -0.12 -1.65 9.72 -39.58 -0.38 -2.03 16 23 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 24 C -0.13 -1.53 10.05 -39.59 -0.40 -1.93 16 25 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 26 C -0.12 -1.57 8.48 -39.58 -0.34 -1.90 16 27 H 0.05 0.92 6.58 -51.93 -0.34 0.58 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.85 5.00 -51.93 -0.26 0.59 16 30 H 0.08 1.96 6.85 -51.93 -0.36 1.61 16 31 H 0.04 0.95 6.34 -51.93 -0.33 0.63 16 32 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 33 H 0.04 0.78 4.89 -51.93 -0.25 0.53 16 34 H 0.09 1.69 7.68 -51.93 -0.40 1.29 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.09 1.30 6.73 -51.93 -0.35 0.95 16 39 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 40 H 0.09 1.78 5.78 -51.93 -0.30 1.47 16 41 H 0.12 1.75 7.49 -52.49 -0.39 1.36 16 42 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -27.79 337.54 -9.88 -37.67 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.80 Total: 6.00 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -2.47 Total: -21.89 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.29 Total: -35.57 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.38 Total: -7.19 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.79 -9.88 -37.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.157 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds