Wall clock time and date at job start Tue Mar 31 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47119 * 2 1 4 4 H 1.08997 * 109.46966 * 301.31959 * 3 2 1 5 5 C 1.50700 * 109.47101 * 181.31480 * 3 2 1 6 6 H 1.07994 * 120.00282 * 245.39862 * 5 3 2 7 7 C 1.37878 * 119.99673 * 65.67852 * 5 3 2 8 8 N 1.31510 * 120.00313 * 8.37202 * 7 5 3 9 9 Si 1.86797 * 119.99649 * 188.36962 * 7 5 3 10 10 H 1.48494 * 109.47595 * 5.00460 * 9 7 5 11 11 H 1.48502 * 109.47237 * 125.00717 * 9 7 5 12 12 H 1.48511 * 109.47288 * 245.00393 * 9 7 5 13 13 N 1.46899 * 109.46503 * 61.31782 * 3 2 1 14 14 C 1.47007 * 111.00553 * 41.15877 * 13 3 2 15 15 C 1.53096 * 109.25979 * 177.60595 * 14 13 3 16 16 O 1.43012 * 109.26218 * 56.84961 * 15 14 13 17 17 C 1.43016 * 113.73436 * 301.33200 * 16 15 14 18 18 C 1.47024 * 110.99948 * 277.51945 * 13 3 2 19 19 H 1.08998 * 109.49999 * 62.46289 * 18 13 3 20 20 C 1.53002 * 109.50773 * 302.33331 * 18 13 3 21 21 C 1.50694 * 109.46744 * 176.77999 * 20 18 13 22 22 C 1.38230 * 119.99949 * 275.41761 * 21 20 18 23 23 C 1.38239 * 119.99923 * 179.79476 * 22 21 20 24 24 C 1.38232 * 119.99909 * 0.43697 * 23 22 21 25 25 C 1.38234 * 120.00199 * 359.81564 * 24 23 22 26 26 C 1.38231 * 119.99819 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47131 * 41.29118 * 1 2 3 28 28 H 1.09000 * 109.47154 * 161.28800 * 1 2 3 29 29 H 1.09000 * 109.46907 * 281.28379 * 1 2 3 30 30 H 1.09006 * 109.47298 * 240.00457 * 2 1 3 31 31 H 1.08996 * 109.47343 * 120.00061 * 2 1 3 32 32 H 0.96998 * 120.00334 * 184.98753 * 8 7 5 33 33 H 1.09002 * 109.50504 * 297.54296 * 14 13 3 34 34 H 1.08999 * 109.50449 * 57.66831 * 14 13 3 35 35 H 1.09000 * 109.50518 * 296.91247 * 15 14 13 36 36 H 1.09004 * 109.54075 * 176.80365 * 15 14 13 37 37 H 1.08994 * 109.50934 * 298.73117 * 17 16 15 38 38 H 1.09001 * 109.50761 * 178.60248 * 17 16 15 39 39 H 1.09005 * 109.46850 * 296.78299 * 20 18 13 40 40 H 1.08998 * 109.47315 * 56.77885 * 20 18 13 41 41 H 1.07997 * 120.00214 * 359.97438 * 22 21 20 42 42 H 1.08005 * 120.00029 * 180.27507 * 23 22 21 43 43 H 1.08001 * 119.99684 * 179.83810 * 24 23 22 44 44 H 1.07999 * 120.00061 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.00144 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6575 1.9632 -0.8779 5 6 3.5467 1.4427 -0.0326 6 1 4.1050 1.8256 0.8088 7 6 4.2122 0.9593 -1.1391 8 7 3.5415 0.6522 -2.2278 9 14 6.0668 0.7406 -1.0917 10 1 6.5657 1.0390 0.2747 11 1 6.4094 -0.6594 -1.4491 12 1 6.6996 1.6685 -2.0633 13 7 1.5765 2.1257 1.2151 14 6 1.6767 1.2432 2.3865 15 6 1.2413 2.0121 3.6367 16 8 -0.0857 2.5100 3.4461 17 6 -0.2194 3.3736 2.3140 18 6 0.2011 2.6185 1.0503 19 1 -0.4707 1.7754 0.8895 20 6 0.1369 3.5610 -0.1533 21 6 -1.2874 4.0033 -0.3693 22 6 -2.1536 3.2119 -1.1001 23 6 -3.4613 3.6157 -1.2947 24 6 -3.9002 4.8152 -0.7661 25 6 -3.0326 5.6091 -0.0397 26 6 -1.7261 5.2033 0.1586 27 1 -0.3633 0.7721 -0.6781 28 1 -0.3633 -0.9733 -0.3297 29 1 -0.3633 0.2011 1.0078 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.9984 0.2448 -2.9803 33 1 1.0284 0.3781 2.2470 34 1 2.7080 0.9107 2.5045 35 1 1.9221 2.8462 3.8065 36 1 1.2596 1.3459 4.4993 37 1 0.4189 4.2473 2.4453 38 1 -1.2577 3.6916 2.2193 39 1 0.7638 4.4328 0.0341 40 1 0.4945 3.0406 -1.0418 41 1 -1.8096 2.2768 -1.5166 42 1 -4.1394 2.9952 -1.8619 43 1 -4.9212 5.1319 -0.9203 44 1 -3.3754 6.5465 0.3730 45 1 -1.0483 5.8234 0.7265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:39 Heat of formation + Delta-G solvation = -23.857833 kcal Electronic energy + Delta-G solvation = -24476.133530 eV Core-core repulsion = 21265.087589 eV Total energy + Delta-G solvation = -3211.045941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30401 -39.82063 -37.83462 -35.18447 -34.21737 -32.54568 -31.73076 -31.26066 -29.70714 -27.64707 -26.92877 -24.84431 -23.90151 -23.36109 -21.99181 -21.71257 -20.42478 -18.45772 -17.70690 -17.46156 -16.98072 -16.43299 -16.38989 -16.02333 -15.78223 -15.67566 -15.30568 -15.07960 -14.49775 -14.22721 -13.98440 -13.76109 -13.65632 -13.35930 -13.30593 -12.98853 -12.78158 -12.71506 -12.52956 -12.45891 -12.15659 -12.09632 -11.84177 -11.78235 -11.67766 -11.43744 -11.20755 -10.97907 -10.39922 -10.32018 -9.75936 -9.49507 -8.75415 -8.10975 -6.16140 0.50702 0.55628 1.39586 1.43074 1.53478 2.43998 2.89584 2.98198 3.18519 3.28244 3.85819 4.00599 4.10369 4.19275 4.20703 4.26928 4.30256 4.31478 4.36311 4.43914 4.46081 4.59956 4.60709 4.64323 4.71985 4.78234 4.83037 4.95874 4.99889 5.02217 5.08834 5.13289 5.18673 5.25314 5.31290 5.39338 5.57742 5.64670 5.67552 5.70403 5.76028 5.83390 6.18769 6.20476 6.26709 6.53566 6.73822 6.96319 7.50978 8.97161 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.005380 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.395418 B = 5202.821766 C = 5963.094523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C 0.217 3.783 4 H 0.028 0.972 5 C -0.507 4.507 6 H 0.051 0.949 7 C 0.017 3.983 8 N -0.920 5.920 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.531 5.531 14 C 0.023 3.977 15 C 0.067 3.933 16 O -0.399 6.399 17 C 0.077 3.923 18 C 0.041 3.959 19 H 0.060 0.940 20 C -0.068 4.068 21 C -0.083 4.083 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.129 4.129 25 C -0.119 4.119 26 C -0.126 4.126 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.259 0.741 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.115 0.885 37 H 0.054 0.946 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.108 0.892 42 H 0.137 0.863 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.987 6.380 6.349 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.176 4.176 3 C 0.110 3.890 4 H 0.046 0.954 5 C -0.546 4.546 6 H 0.069 0.931 7 C -0.182 4.182 8 N -0.560 5.560 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.256 5.256 14 C -0.106 4.106 15 C -0.010 4.010 16 O -0.318 6.318 17 C 0.000 4.000 18 C -0.067 4.067 19 H 0.077 0.923 20 C -0.106 4.106 21 C -0.083 4.083 22 C -0.153 4.153 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.137 4.137 26 C -0.144 4.144 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.126 0.874 42 H 0.155 0.845 43 H 0.164 0.836 44 H 0.165 0.835 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.783 6.742 6.366 15.792 hybrid contribution 1.198 -1.195 -0.931 1.931 sum -11.585 5.547 5.435 13.947 Atomic orbital electron populations 1.22047 0.96702 1.00620 1.00422 1.21996 0.94080 1.01317 1.00205 1.19243 0.93717 0.88567 0.87495 0.95385 1.21409 0.92273 1.39945 1.00979 0.93064 1.25566 1.01894 0.96176 0.94556 1.70071 1.37705 1.43712 1.04547 0.85681 0.81520 0.77390 0.78058 1.19282 1.20853 1.21111 1.62480 1.19838 1.38677 1.04604 1.22719 1.01302 0.95040 0.91492 1.22779 0.83345 0.97954 0.96924 1.87888 1.30103 1.66099 1.47704 1.22720 1.01658 0.91815 0.83767 1.22574 0.91059 0.97694 0.95395 0.92278 1.20532 0.93011 0.99282 0.97726 1.19882 0.94927 0.95575 0.97943 1.21175 0.94712 0.99736 0.99709 1.21376 0.95207 0.97478 1.00017 1.21465 1.00848 0.94447 0.97942 1.21454 0.93072 1.00578 0.98561 1.21259 0.97069 0.95747 1.00333 0.93578 0.93244 0.92601 0.93636 0.93957 0.93167 0.94491 0.90937 0.92623 0.86678 0.92725 0.87968 0.91162 0.92457 0.87436 0.84520 0.83557 0.83523 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 8.02 71.98 0.58 -4.84 16 2 C -0.14 -6.28 4.73 30.60 0.14 -6.13 16 3 C 0.22 10.52 1.62 44.17 0.07 10.59 16 4 H 0.03 1.53 5.24 -2.39 -0.01 1.52 16 5 C -0.51 -27.51 8.19 25.60 0.21 -27.30 16 6 H 0.05 2.82 7.79 -2.91 -0.02 2.79 16 7 C 0.02 0.91 5.21 84.66 0.44 1.35 16 8 N -0.92 -52.74 12.11 21.45 0.26 -52.48 16 9 Si 0.95 43.72 29.55 68.60 2.03 45.74 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 N -0.53 -21.94 4.39 -849.28 -3.73 -25.67 16 14 C 0.02 0.85 4.36 86.31 0.38 1.22 16 15 C 0.07 2.04 7.01 72.01 0.50 2.54 16 16 O -0.40 -12.96 10.83 -148.98 -1.61 -14.57 16 17 C 0.08 2.40 5.81 72.01 0.42 2.82 16 18 C 0.04 1.47 1.45 44.92 0.06 1.53 16 19 H 0.06 2.19 3.88 -2.39 -0.01 2.19 16 20 C -0.07 -2.39 4.69 29.85 0.14 -2.25 16 21 C -0.08 -2.43 4.50 -19.87 -0.09 -2.52 16 22 C -0.14 -3.86 9.72 22.27 0.22 -3.64 16 23 C -0.12 -2.81 10.05 22.27 0.22 -2.59 16 24 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 25 C -0.12 -2.38 10.05 22.27 0.22 -2.15 16 26 C -0.13 -3.07 8.48 22.27 0.19 -2.88 16 27 H 0.05 1.78 6.58 -2.39 -0.02 1.77 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 2.03 5.00 -2.39 -0.01 2.02 16 30 H 0.04 2.38 6.85 -2.38 -0.02 2.36 16 31 H 0.04 1.91 6.34 -2.39 -0.02 1.89 16 32 H 0.26 14.22 8.32 -92.71 -0.77 13.45 16 33 H 0.04 1.39 4.89 -2.39 -0.01 1.38 16 34 H 0.07 2.87 7.68 -2.39 -0.02 2.85 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 2.86 6.73 -2.39 -0.02 2.85 16 39 H 0.07 2.48 8.05 -2.38 -0.02 2.46 16 40 H 0.06 2.39 5.78 -2.39 -0.01 2.38 16 41 H 0.11 3.26 7.49 -2.91 -0.02 3.24 16 42 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 43 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 45 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -60.93 337.54 1.86 -59.07 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.97 Total: 24.45 kcal Atomic # 6 Polarization: -40.49 SS G_CDS: 3.94 Total: -36.55 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -3.47 Total: -78.15 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -1.61 Total: -14.57 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -60.93 1.86 -59.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.216 kcal (2) G-P(sol) polarization free energy of solvation -60.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds