Wall clock time and date at job start Tue Mar 31 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47405 * 2 1 4 4 H 1.09002 * 109.46820 * 56.92439 * 3 2 1 5 5 C 1.50695 * 109.47124 * 176.92536 * 3 2 1 6 6 H 1.08001 * 120.00191 * 95.23058 * 5 3 2 7 7 C 1.37873 * 120.00246 * 275.22636 * 5 3 2 8 8 N 1.31522 * 119.99769 * 355.48245 * 7 5 3 9 9 Si 1.86793 * 120.00560 * 175.21072 * 7 5 3 10 10 H 1.48497 * 109.47493 * 89.99729 * 9 7 5 11 11 H 1.48502 * 109.47623 * 210.00298 * 9 7 5 12 12 H 1.48504 * 109.46792 * 329.99760 * 9 7 5 13 13 N 1.46898 * 109.46653 * 296.92750 * 3 2 1 14 14 C 1.46852 * 111.00007 * 299.20450 * 13 3 2 15 15 C 1.53041 * 109.52416 * 174.16355 * 14 13 3 16 16 C 1.53121 * 109.27632 * 59.17785 * 15 14 13 17 17 C 1.50696 * 109.52163 * 182.44069 * 16 15 14 18 18 C 1.38265 * 119.94416 * 59.41508 * 17 16 15 19 19 C 1.38145 * 120.05264 * 179.72594 * 18 17 16 20 20 C 1.38737 * 119.94583 * 0.57015 * 19 18 17 21 21 O 1.35902 * 120.05540 * 179.68373 * 20 19 18 22 22 C 1.38725 * 119.88729 * 359.69844 * 20 19 18 23 23 C 1.38150 * 119.94580 * 0.02562 * 22 20 19 24 24 C 1.53114 * 109.16384 * 302.34921 * 16 15 14 25 25 C 1.46845 * 110.99871 * 174.99859 * 13 3 2 26 26 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47223 * 300.00234 * 1 2 3 28 28 H 1.09001 * 109.47426 * 59.99955 * 1 2 3 29 29 H 1.09005 * 109.47223 * 239.99766 * 2 1 3 30 30 H 1.09001 * 109.47426 * 120.00045 * 2 1 3 31 31 H 0.97001 * 119.99641 * 4.95179 * 8 7 5 32 32 H 1.08998 * 109.46323 * 294.18248 * 14 13 3 33 33 H 1.09000 * 109.45993 * 54.14931 * 14 13 3 34 34 H 1.08997 * 109.50056 * 299.24255 * 15 14 13 35 35 H 1.08993 * 109.50383 * 179.12228 * 15 14 13 36 36 H 1.09009 * 109.57143 * 62.28413 * 16 15 14 37 37 H 1.08001 * 119.97259 * 359.97258 * 18 17 16 38 38 H 1.07998 * 120.02628 * 180.24851 * 19 18 17 39 39 H 0.96696 * 113.99818 * 270.02024 * 21 20 19 40 40 H 1.08006 * 120.02959 * 179.97438 * 22 20 19 41 41 H 1.07997 * 119.97144 * 179.97438 * 23 22 20 42 42 H 1.08998 * 109.50138 * 297.70999 * 24 16 15 43 43 H 1.09003 * 109.50053 * 177.59453 * 24 16 15 44 44 H 1.08998 * 109.46328 * 305.85822 * 25 13 3 45 45 H 1.09003 * 109.46502 * 65.83355 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6324 1.9720 0.8612 5 6 3.5450 1.4431 0.0762 6 1 4.1315 1.5119 -0.8281 7 6 4.1734 1.3559 1.3003 8 7 3.4620 1.3618 2.4065 9 14 6.0345 1.2218 1.3876 10 1 6.6260 2.5819 1.4596 11 1 6.4191 0.4500 2.5966 12 1 6.5379 0.5265 0.1757 13 7 1.6119 2.1131 -1.2348 14 6 2.1590 1.4367 -2.4179 15 6 1.5778 2.0705 -3.6839 16 6 1.9344 3.5593 -3.7135 17 6 1.3141 4.2017 -4.9273 18 6 -0.0576 4.1732 -5.0982 19 6 -0.6291 4.7664 -6.2073 20 6 0.1756 5.3806 -7.1560 21 8 -0.3838 5.9592 -8.2511 22 6 1.5520 5.4030 -6.9850 23 6 2.1183 4.8134 -5.8713 24 6 1.3952 4.2305 -2.4474 25 6 1.9817 3.5342 -1.2173 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4931 1.3549 2.3601 32 1 3.2441 1.5394 -2.4257 33 1 1.8946 0.3798 -2.3866 34 1 0.4938 1.9559 -3.6834 35 1 1.9959 1.5786 -4.5620 36 1 3.0177 3.6745 -3.7537 37 1 -0.6831 3.6903 -4.3621 38 1 -1.7009 4.7473 -6.3383 39 1 -0.4789 5.3624 -9.0059 40 1 2.1806 5.8802 -7.7223 41 1 3.1898 4.8302 -5.7379 42 1 0.3084 4.1500 -2.4275 43 1 1.6830 5.2819 -2.4422 44 1 1.5886 4.0006 -0.3139 45 1 3.0676 3.6271 -1.2309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:47 Heat of formation + Delta-G solvation = -36.391162 kcal Electronic energy + Delta-G solvation = -23437.404093 eV Core-core repulsion = 20225.814666 eV Total energy + Delta-G solvation = -3211.589427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07388 -38.61228 -36.97412 -34.83277 -32.19035 -31.37942 -31.07666 -30.17903 -28.73025 -25.95533 -23.92807 -23.05744 -22.79861 -22.45983 -21.22384 -19.65912 -18.99487 -18.52998 -16.77836 -16.18657 -15.64385 -15.38729 -14.99131 -14.22051 -14.09987 -13.80368 -13.73569 -13.55009 -13.40305 -13.23526 -12.67332 -12.62129 -12.18099 -12.08131 -11.91718 -11.71998 -11.48488 -10.99713 -10.85698 -10.67853 -10.63017 -10.57607 -10.32475 -10.21309 -10.14432 -9.95829 -9.53754 -9.49689 -9.05858 -8.95154 -8.45239 -8.37185 -7.02954 -6.35265 -4.11883 1.16168 1.28137 3.38875 3.42330 3.54440 3.57504 4.09086 4.48906 4.71493 4.82675 4.88539 4.97761 5.22416 5.30964 5.34254 5.36592 5.49238 5.57459 5.80648 5.81928 5.95038 6.02504 6.04918 6.10822 6.14133 6.18663 6.28821 6.32853 6.33471 6.36488 6.39227 6.49457 6.59532 6.69204 6.74298 6.77729 6.84678 6.88004 6.93931 7.11878 7.34936 7.37142 7.48617 7.95643 8.16406 8.32632 8.53774 8.81888 9.62170 10.99058 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.003736 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.393070 B = 7493.812835 C = 8165.032064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C 0.195 3.805 4 H 0.041 0.959 5 C -0.621 4.621 6 H 0.051 0.949 7 C 0.026 3.974 8 N -0.910 5.910 9 Si 1.063 2.937 10 H -0.289 1.289 11 H -0.285 1.285 12 H -0.290 1.290 13 N -0.529 5.529 14 C 0.058 3.942 15 C -0.105 4.105 16 C -0.049 4.049 17 C -0.070 4.070 18 C -0.096 4.096 19 C -0.143 4.143 20 C 0.088 3.912 21 O -0.502 6.502 22 C -0.144 4.144 23 C -0.104 4.104 24 C -0.105 4.105 25 C 0.068 3.932 26 H 0.028 0.972 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.271 0.729 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.386 0.614 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.889 4.500 -16.963 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C 0.088 3.912 4 H 0.059 0.941 5 C -0.660 4.660 6 H 0.069 0.931 7 C -0.179 4.179 8 N -0.546 5.546 9 Si 0.892 3.108 10 H -0.216 1.216 11 H -0.210 1.210 12 H -0.216 1.216 13 N -0.253 5.253 14 C -0.070 4.070 15 C -0.142 4.142 16 C -0.068 4.068 17 C -0.070 4.070 18 C -0.114 4.114 19 C -0.162 4.162 20 C 0.044 3.956 21 O -0.312 6.312 22 C -0.163 4.163 23 C -0.122 4.122 24 C -0.143 4.143 25 C -0.061 4.061 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.241 0.759 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.150 4.905 -15.557 17.106 hybrid contribution -0.288 -0.284 -1.369 1.427 sum -5.438 4.622 -16.926 18.369 Atomic orbital electron populations 1.21735 0.98027 0.98836 1.01276 1.21697 0.93128 0.99522 1.00304 1.19431 0.93798 0.90267 0.87661 0.94138 1.22490 0.92381 1.55880 0.95272 0.93110 1.25692 1.06601 0.93368 0.92252 1.70769 1.08524 1.46138 1.29134 0.83627 0.74859 0.76782 0.75509 1.21582 1.21020 1.21595 1.62387 1.58311 1.01346 1.03240 1.21938 0.97430 0.98050 0.89589 1.21680 1.01266 0.93527 0.97777 1.20261 0.99568 0.95378 0.91551 1.20098 0.93576 0.97280 0.96071 1.20972 0.94679 0.98669 0.97104 1.21399 1.00111 0.99010 0.95671 1.18453 0.90762 0.96977 0.89375 1.84828 1.83101 1.40173 1.23093 1.21366 0.94137 1.01342 0.99436 1.21010 0.99933 0.97712 0.93588 1.21681 1.00767 0.98127 0.93684 1.21767 0.98570 0.89749 0.96008 0.95259 0.94057 0.92561 0.93626 0.92985 0.91723 0.94514 0.91344 0.91690 0.92626 0.90808 0.85332 0.85709 0.75872 0.85775 0.85720 0.91697 0.92486 0.92009 0.94228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.78 37.15 0.36 -2.29 16 2 C -0.11 -2.37 5.17 -26.73 -0.14 -2.51 16 3 C 0.20 4.61 1.49 -68.87 -0.10 4.51 16 4 H 0.04 1.07 6.62 -51.93 -0.34 0.73 16 5 C -0.62 -16.33 6.91 -34.44 -0.24 -16.57 16 6 H 0.05 1.36 6.07 -52.49 -0.32 1.04 16 7 C 0.03 0.73 5.45 -17.82 -0.10 0.63 16 8 N -0.91 -26.53 13.63 55.43 0.76 -25.77 16 9 Si 1.06 24.73 29.91 -169.99 -5.08 19.65 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.53 -10.65 4.01 -228.08 -0.92 -11.56 16 14 C 0.06 1.08 4.81 -3.83 -0.02 1.06 16 15 C -0.10 -1.55 5.22 -26.65 -0.14 -1.69 16 16 C -0.05 -0.69 2.43 -91.65 -0.22 -0.92 16 17 C -0.07 -0.89 4.79 -104.60 -0.50 -1.39 16 18 C -0.10 -1.16 8.66 -39.61 -0.34 -1.50 16 19 C -0.14 -1.61 9.99 -39.43 -0.39 -2.00 16 20 C 0.09 0.99 6.70 -39.22 -0.26 0.73 16 21 O -0.50 -4.92 13.50 -19.43 -0.26 -5.18 16 22 C -0.14 -1.59 9.99 -39.43 -0.39 -1.98 16 23 C -0.10 -1.22 9.66 -39.60 -0.38 -1.60 16 24 C -0.10 -1.60 5.23 -26.65 -0.14 -1.74 16 25 C 0.07 1.30 5.13 -3.84 -0.02 1.28 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.03 7.69 -51.93 -0.40 0.63 16 29 H 0.05 0.98 6.14 -51.93 -0.32 0.66 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.27 7.88 6.66 -40.82 -0.27 7.61 16 32 H 0.04 0.76 6.36 -51.93 -0.33 0.42 16 33 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 34 H 0.06 0.94 7.28 -51.93 -0.38 0.57 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.08 7.88 -51.92 -0.41 0.67 16 37 H 0.13 1.49 7.05 -52.49 -0.37 1.12 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.39 1.87 9.06 45.56 0.41 2.28 16 40 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.12 1.30 7.94 -52.49 -0.42 0.88 16 42 H 0.06 0.98 7.33 -51.93 -0.38 0.59 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.24 8.08 -51.93 -0.42 0.83 16 45 H 0.04 0.84 7.44 -51.93 -0.39 0.46 16 LS Contribution 348.18 15.07 5.25 5.25 Total: -1.00 -29.46 348.18 -9.68 -39.14 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.40 Total: 4.47 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -3.03 Total: -25.99 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.16 Total: -37.34 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.26 Total: -5.18 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.65 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.46 -9.68 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.753 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds